Wall clock time and date at job start Tue Mar 31 2020 18:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46844 * 292.13604 * 3 2 1 5 5 C 1.53007 * 109.46743 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46824 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00266 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99761 * 179.97438 * 6 5 4 9 9 C 1.47026 * 125.65087 * 359.97438 * 8 6 5 10 10 C 1.54326 * 107.27304 * 178.98353 * 9 8 6 11 11 C 1.55150 * 102.94194 * 337.80900 * 10 9 8 12 12 H 1.09004 * 111.00719 * 277.38663 * 11 10 9 13 13 C 1.52998 * 111.00425 * 153.57638 * 11 10 9 14 14 N 1.46899 * 109.47140 * 64.47826 * 13 11 10 15 15 C 1.46900 * 110.99990 * 195.97997 * 14 13 11 16 16 C 1.46900 * 110.99832 * 72.03214 * 14 13 11 17 17 C 1.50704 * 109.46935 * 189.99930 * 16 14 13 18 18 O 1.21288 * 120.00251 * 359.97438 * 17 16 14 19 19 N 1.34778 * 119.99545 * 179.97438 * 17 16 14 20 20 C 1.37106 * 119.99721 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99612 * 0.02562 * 20 19 17 22 22 C 1.38943 * 119.99692 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00675 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99600 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47198 * 60.00430 * 24 22 20 26 26 H 1.48507 * 109.47328 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47398 * 300.00019 * 24 22 20 28 28 C 1.47429 * 125.64959 * 180.02562 * 8 6 5 29 29 H 4.44647 * 5.63392 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.46607 * 172.13975 * 3 2 1 31 31 H 1.08997 * 109.47077 * 52.13698 * 3 2 1 32 32 H 1.08999 * 109.47216 * 60.00743 * 4 3 2 33 33 H 1.08997 * 109.47360 * 299.99921 * 4 3 2 34 34 H 1.08999 * 109.46633 * 60.00417 * 5 4 3 35 35 H 1.08997 * 109.47153 * 300.00078 * 5 4 3 36 36 H 1.09005 * 109.87923 * 59.56972 * 9 8 6 37 37 H 1.08991 * 109.88093 * 298.40566 * 9 8 6 38 38 H 1.09002 * 110.71848 * 219.44369 * 10 9 8 39 39 H 1.08995 * 110.71576 * 96.17479 * 10 9 8 40 40 H 1.09004 * 109.46933 * 304.48198 * 13 11 10 41 41 H 1.09003 * 109.47637 * 184.47978 * 13 11 10 42 42 H 1.09003 * 109.47177 * 54.74713 * 15 14 13 43 43 H 1.09001 * 109.47302 * 294.74745 * 15 14 13 44 44 H 1.09000 * 109.47272 * 174.74812 * 15 14 13 45 45 H 1.09003 * 109.47011 * 309.99790 * 16 14 13 46 46 H 1.09002 * 109.47790 * 69.99686 * 16 14 13 47 47 H 0.96998 * 120.00763 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00677 * 179.97438 * 23 22 20 49 49 H 1.09002 * 110.36560 * 85.24973 * 28 8 6 50 50 H 1.08992 * 110.36906 * 322.92712 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.5427 1.3362 5 6 4.6862 -0.5426 1.3359 6 6 5.1888 -1.0783 2.6517 7 8 4.4008 -1.4264 3.5055 8 7 6.5139 -1.1716 2.8794 9 6 7.5745 -0.7887 1.9360 10 6 8.9255 -1.0458 2.6362 11 6 8.5463 -1.0264 4.1406 12 1 8.4992 -0.0050 4.5185 13 6 9.5240 -1.8677 4.9635 14 7 10.8623 -1.2656 4.8995 15 6 11.8895 -2.2173 5.3434 16 6 10.9196 -0.0252 5.6844 17 6 12.2162 0.6889 5.4014 18 8 13.0143 0.2112 4.6229 19 7 12.4889 1.8583 6.0135 20 6 13.6687 2.5077 5.7565 21 1 14.3793 2.0823 5.0633 22 6 13.9496 3.7135 6.3871 23 7 13.0848 4.2313 7.2302 24 14 15.5568 4.5986 6.0364 25 1 15.6377 4.9231 4.5895 26 1 15.6139 5.8535 6.8284 27 1 16.6962 3.7234 6.4119 28 6 7.1400 -1.6754 4.1154 29 1 -1.0500 0.0001 0.0002 30 1 3.0088 1.0188 -0.1405 31 1 3.0096 -0.6299 -0.8113 32 1 2.7934 -1.5608 1.4767 33 1 2.7926 0.0879 2.1475 34 1 5.0494 0.4755 1.1952 35 1 5.0495 -1.1734 0.5246 36 1 7.4828 0.2679 1.6840 37 1 7.5038 -1.3947 1.0329 38 1 9.6359 -0.2515 2.4072 39 1 9.3279 -2.0182 2.3525 40 1 9.5612 -2.8797 4.5600 41 1 9.1902 -1.9021 6.0006 42 1 11.8099 -3.1356 4.7615 43 1 11.7436 -2.4429 6.3998 44 1 12.8773 -1.7797 5.1984 45 1 10.0833 0.6176 5.4095 46 1 10.8605 -0.2640 6.7463 47 1 11.8509 2.2401 6.6364 48 1 13.2811 5.0729 7.6707 49 1 7.2241 -2.7617 4.0824 50 1 6.5632 -1.3651 4.9866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481484689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:04 Heat of formation + Delta-G solvation = -21.358378 kcal Electronic energy + Delta-G solvation = -28108.464725 eV Core-core repulsion = 24136.917916 eV Total energy + Delta-G solvation = -3971.546808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34553 -38.81777 -37.87672 -36.15349 -35.82932 -33.88156 -32.78897 -31.98020 -31.25231 -29.63382 -28.51850 -28.00941 -26.30409 -24.69942 -23.59661 -22.40123 -21.94580 -20.32924 -19.43369 -19.04040 -18.43912 -17.83841 -17.19673 -16.79594 -16.30428 -15.76442 -15.40883 -15.23461 -14.93124 -14.52005 -14.44831 -14.25374 -13.85361 -13.72970 -13.62244 -13.46459 -13.19987 -13.05361 -12.75566 -12.55226 -12.41388 -12.11623 -11.91333 -11.78490 -11.51624 -11.46217 -11.35998 -11.27237 -11.07323 -10.98928 -10.88615 -10.56168 -10.52390 -10.44749 -10.42445 -10.22304 -10.01855 -9.47728 -8.83947 -8.45437 -7.99029 -7.85738 -6.42411 -3.83428 2.43851 2.45311 2.52468 2.79497 3.18940 3.24983 3.28949 3.88990 3.91847 4.00497 4.18028 4.27867 4.48477 4.59734 4.65756 4.70271 4.76438 4.99988 5.04844 5.08772 5.12030 5.15613 5.22129 5.23439 5.25367 5.34259 5.42324 5.54361 5.57437 5.66060 5.69972 5.72497 5.75535 5.77876 5.84423 5.91781 5.92315 6.00170 6.04188 6.17709 6.24270 6.28474 6.54308 7.24492 7.30092 7.31731 7.37388 7.54018 7.96327 8.05410 8.61094 9.17296 9.53849 10.05711 10.75185 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014604 B = 0.001891 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.782014 B =14802.589188 C =15997.612977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.185 4.185 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.137 4.137 6 C 0.527 3.473 7 O -0.544 6.544 8 N -0.619 5.619 9 C 0.095 3.905 10 C -0.112 4.112 11 C -0.097 4.097 12 H 0.087 0.913 13 C 0.065 3.935 14 N -0.515 5.515 15 C 0.023 3.977 16 C 0.043 3.957 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.111 3.889 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.058 0.942 43 H 0.014 0.986 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.068 0.932 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.773 -10.151 -10.900 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.185 4.185 3 C -0.051 4.051 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.316 3.684 7 O -0.422 6.422 8 N -0.353 5.353 9 C -0.027 4.027 10 C -0.149 4.149 11 C -0.117 4.117 12 H 0.105 0.895 13 C -0.064 4.064 14 N -0.239 5.239 15 C -0.124 4.124 16 C -0.088 4.088 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.012 4.012 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.614 -10.351 -11.365 23.379 hybrid contribution 0.051 0.629 1.128 1.293 sum -17.562 -9.722 -10.237 22.534 Atomic orbital electron populations 1.24922 0.96026 1.01206 1.00762 1.23100 0.94582 1.00350 1.00494 1.18769 0.84893 1.02725 0.98668 1.21289 0.92917 1.03044 0.96507 1.21661 0.97213 1.03273 0.95496 1.20344 0.80432 0.78132 0.89483 1.90713 1.54415 1.49832 1.47216 1.48559 1.05137 1.64012 1.17628 1.22212 0.87503 1.00343 0.92677 1.22535 0.94819 1.03960 0.93631 1.22377 0.92565 1.00353 0.96404 0.89521 1.22029 0.88914 0.97519 0.97901 1.61553 1.02703 1.04497 1.55123 1.22534 0.98142 0.95214 0.96548 1.21933 0.98729 0.92468 0.95676 1.19734 0.88539 0.83413 0.85348 1.90475 1.50012 1.67132 1.38604 1.41872 1.19292 1.19086 1.39868 1.19642 0.95931 1.02701 1.24646 0.87971 1.25250 0.99295 0.97099 0.96249 1.69600 1.35842 1.20416 1.28462 0.85928 0.81493 0.78363 0.78483 1.19912 1.21011 1.19935 1.22224 0.92991 0.98438 0.87539 0.76701 0.89355 0.89438 0.90766 0.90676 0.88528 0.88664 0.91200 0.91369 0.88925 0.90397 0.90569 0.94628 0.92320 0.96763 0.88463 0.89493 0.93546 0.77535 0.91829 0.91395 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.68 19.25 29.55 0.57 -1.11 16 2 C -0.19 -1.60 13.34 -37.12 -0.50 -2.10 16 3 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.79 4.46 -26.73 -0.12 -0.91 16 5 C -0.14 -0.97 4.89 -27.88 -0.14 -1.10 16 6 C 0.53 5.85 7.85 -10.99 -0.09 5.76 16 7 O -0.54 -8.16 16.24 5.56 0.09 -8.07 16 8 N -0.62 -6.31 3.33 -170.52 -0.57 -6.87 16 9 C 0.10 0.78 6.49 -3.06 -0.02 0.76 16 10 C -0.11 -1.10 6.20 -24.90 -0.15 -1.25 16 11 C -0.10 -1.03 3.00 -88.48 -0.27 -1.30 16 12 H 0.09 1.01 6.68 -51.93 -0.35 0.67 16 13 C 0.07 0.74 4.43 -3.83 -0.02 0.73 16 14 N -0.52 -7.83 4.23 -244.36 -1.03 -8.86 16 15 C 0.02 0.36 9.18 60.06 0.55 0.91 16 16 C 0.04 0.74 5.30 -4.97 -0.03 0.71 16 17 C 0.44 10.09 7.52 -10.98 -0.08 10.01 16 18 O -0.58 -14.93 13.88 5.55 0.08 -14.85 16 19 N -0.56 -13.97 5.29 -10.96 -0.06 -14.02 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 21 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 24 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.11 1.15 6.38 -2.53 -0.02 1.14 16 29 H 0.22 0.99 7.80 -54.09 -0.42 0.57 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 40 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 41 H 0.04 0.39 8.05 -51.93 -0.42 -0.02 16 42 H 0.06 0.76 7.97 -51.93 -0.41 0.34 16 43 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 44 H 0.10 1.83 5.90 -51.93 -0.31 1.53 16 45 H 0.09 1.34 6.44 -51.93 -0.33 1.01 16 46 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 50 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 LS Contribution 413.69 15.07 6.23 6.23 Total: -1.00 -33.31 413.69 -8.64 -41.96 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.38 Total: 8.13 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.71 Total: 4.15 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.93 Total: -53.28 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.17 Total: -22.92 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.31 -8.64 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481484689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.597 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds