Wall clock time and date at job start Tue Mar 31 2020 18:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46844 * 292.13604 * 3 2 1 5 5 C 1.53007 * 109.46743 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46824 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00266 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99761 * 179.97438 * 6 5 4 9 9 C 1.47026 * 125.65087 * 359.97438 * 8 6 5 10 10 C 1.54326 * 107.27304 * 178.98353 * 9 8 6 11 11 C 1.55150 * 102.94194 * 337.80900 * 10 9 8 12 12 H 1.09004 * 111.00719 * 277.38663 * 11 10 9 13 13 C 1.52998 * 111.00425 * 153.57638 * 11 10 9 14 14 N 1.46899 * 109.47140 * 64.47826 * 13 11 10 15 15 C 1.46900 * 110.99990 * 195.97997 * 14 13 11 16 16 C 1.46900 * 110.99832 * 72.03214 * 14 13 11 17 17 C 1.50704 * 109.46935 * 189.99930 * 16 14 13 18 18 O 1.21288 * 120.00251 * 359.97438 * 17 16 14 19 19 N 1.34778 * 119.99545 * 179.97438 * 17 16 14 20 20 C 1.37106 * 119.99721 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99612 * 0.02562 * 20 19 17 22 22 C 1.38943 * 119.99692 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00675 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99600 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47198 * 60.00430 * 24 22 20 26 26 H 1.48507 * 109.47328 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47398 * 300.00019 * 24 22 20 28 28 C 1.47429 * 125.64959 * 180.02562 * 8 6 5 29 29 H 4.44647 * 5.63392 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.46607 * 172.13975 * 3 2 1 31 31 H 1.08997 * 109.47077 * 52.13698 * 3 2 1 32 32 H 1.08999 * 109.47216 * 60.00743 * 4 3 2 33 33 H 1.08997 * 109.47360 * 299.99921 * 4 3 2 34 34 H 1.08999 * 109.46633 * 60.00417 * 5 4 3 35 35 H 1.08997 * 109.47153 * 300.00078 * 5 4 3 36 36 H 1.09005 * 109.87923 * 59.56972 * 9 8 6 37 37 H 1.08991 * 109.88093 * 298.40566 * 9 8 6 38 38 H 1.09002 * 110.71848 * 219.44369 * 10 9 8 39 39 H 1.08995 * 110.71576 * 96.17479 * 10 9 8 40 40 H 1.09004 * 109.46933 * 304.48198 * 13 11 10 41 41 H 1.09003 * 109.47637 * 184.47978 * 13 11 10 42 42 H 1.09003 * 109.47177 * 54.74713 * 15 14 13 43 43 H 1.09001 * 109.47302 * 294.74745 * 15 14 13 44 44 H 1.09000 * 109.47272 * 174.74812 * 15 14 13 45 45 H 1.09003 * 109.47011 * 309.99790 * 16 14 13 46 46 H 1.09002 * 109.47790 * 69.99686 * 16 14 13 47 47 H 0.96998 * 120.00763 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00677 * 179.97438 * 23 22 20 49 49 H 1.09002 * 110.36560 * 85.24973 * 28 8 6 50 50 H 1.08992 * 110.36906 * 322.92712 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.5427 1.3362 5 6 4.6862 -0.5426 1.3359 6 6 5.1888 -1.0783 2.6517 7 8 4.4008 -1.4264 3.5055 8 7 6.5139 -1.1716 2.8794 9 6 7.5745 -0.7887 1.9360 10 6 8.9255 -1.0458 2.6362 11 6 8.5463 -1.0264 4.1406 12 1 8.4992 -0.0050 4.5185 13 6 9.5240 -1.8677 4.9635 14 7 10.8623 -1.2656 4.8995 15 6 11.8895 -2.2173 5.3434 16 6 10.9196 -0.0252 5.6844 17 6 12.2162 0.6889 5.4014 18 8 13.0143 0.2112 4.6229 19 7 12.4889 1.8583 6.0135 20 6 13.6687 2.5077 5.7565 21 1 14.3793 2.0823 5.0633 22 6 13.9496 3.7135 6.3871 23 7 13.0848 4.2313 7.2302 24 14 15.5568 4.5986 6.0364 25 1 15.6377 4.9231 4.5895 26 1 15.6139 5.8535 6.8284 27 1 16.6962 3.7234 6.4119 28 6 7.1400 -1.6754 4.1154 29 1 -1.0500 0.0001 0.0002 30 1 3.0088 1.0188 -0.1405 31 1 3.0096 -0.6299 -0.8113 32 1 2.7934 -1.5608 1.4767 33 1 2.7926 0.0879 2.1475 34 1 5.0494 0.4755 1.1952 35 1 5.0495 -1.1734 0.5246 36 1 7.4828 0.2679 1.6840 37 1 7.5038 -1.3947 1.0329 38 1 9.6359 -0.2515 2.4072 39 1 9.3279 -2.0182 2.3525 40 1 9.5612 -2.8797 4.5600 41 1 9.1902 -1.9021 6.0006 42 1 11.8099 -3.1356 4.7615 43 1 11.7436 -2.4429 6.3998 44 1 12.8773 -1.7797 5.1984 45 1 10.0833 0.6176 5.4095 46 1 10.8605 -0.2640 6.7463 47 1 11.8509 2.2401 6.6364 48 1 13.2811 5.0729 7.6707 49 1 7.2241 -2.7617 4.0824 50 1 6.5632 -1.3651 4.9866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481484689.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:03 Heat of formation + Delta-G solvation = -43.232850 kcal Electronic energy + Delta-G solvation = -28109.413273 eV Core-core repulsion = 24136.917916 eV Total energy + Delta-G solvation = -3972.495357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18679 -40.34240 -39.00824 -37.36138 -36.47098 -35.82102 -33.52818 -33.24385 -32.78283 -30.41723 -29.56366 -29.12079 -27.27347 -26.50880 -24.44753 -23.32660 -22.80571 -21.42623 -20.70635 -20.11567 -19.76890 -19.01931 -18.05654 -17.90793 -17.32607 -16.79892 -16.62029 -16.44504 -16.15792 -15.99807 -15.46217 -15.30227 -15.13293 -14.87023 -14.83860 -14.52164 -13.94276 -13.80459 -13.73313 -13.64459 -13.43772 -13.34396 -13.21948 -13.02379 -12.72439 -12.62120 -12.50779 -12.42815 -12.37143 -12.11341 -11.95330 -11.91730 -11.79483 -11.46894 -11.38076 -11.17586 -10.96703 -10.88033 -10.22629 -9.97101 -9.64404 -9.15146 -8.43640 -5.92133 1.41378 1.43149 1.53778 1.62944 1.82127 1.93174 2.06338 2.09459 2.30417 2.79239 3.23349 3.38554 3.48416 3.57072 3.71836 3.82730 3.90077 4.06906 4.16379 4.24838 4.33921 4.38726 4.40439 4.46499 4.49761 4.55562 4.57804 4.65014 4.66538 4.70077 4.72661 4.78555 4.81380 4.84198 4.97300 5.05967 5.18599 5.19974 5.23604 5.25103 5.32635 5.36730 5.43567 5.43961 5.91190 6.10448 6.25282 6.54024 6.63963 6.72699 7.15023 7.16276 7.60433 8.16230 8.73492 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014604 B = 0.001891 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.782014 B =14802.589188 C =15997.612977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.093 4.093 5 C -0.127 4.127 6 C 0.519 3.481 7 O -0.593 6.593 8 N -0.620 5.620 9 C 0.098 3.902 10 C -0.109 4.109 11 C -0.093 4.093 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.527 5.527 15 C 0.027 3.973 16 C 0.056 3.944 17 C 0.444 3.556 18 O -0.611 6.611 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.272 1.272 28 C 0.113 3.887 29 H 0.239 0.761 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.083 0.917 43 H 0.024 0.976 44 H 0.056 0.944 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.394 0.606 48 H 0.276 0.724 49 H 0.077 0.923 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.238 -10.414 -12.228 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.132 4.132 5 C -0.167 4.167 6 C 0.310 3.690 7 O -0.474 6.474 8 N -0.353 5.353 9 C -0.024 4.024 10 C -0.147 4.147 11 C -0.112 4.112 12 H 0.093 0.907 13 C -0.059 4.059 14 N -0.251 5.251 15 C -0.121 4.121 16 C -0.075 4.075 17 C 0.231 3.769 18 O -0.497 6.497 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.197 1.197 28 C -0.010 4.010 29 H 0.255 0.745 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.123 0.877 46 H 0.079 0.921 47 H 0.228 0.772 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.078 -10.619 -12.703 24.514 hybrid contribution 0.161 0.632 1.539 1.671 sum -17.917 -9.987 -11.164 23.354 Atomic orbital electron populations 1.25711 0.97120 1.00808 1.00202 1.23839 0.95856 1.00872 1.01083 1.18847 0.83755 1.03966 0.98117 1.21173 0.93725 1.01500 0.96760 1.21695 0.96243 1.04813 0.93912 1.21084 0.80217 0.77396 0.90333 1.90691 1.55599 1.52095 1.49058 1.48673 1.05414 1.63434 1.17814 1.22311 0.85678 1.01622 0.92742 1.22479 0.95447 1.03600 0.93171 1.22273 0.92535 0.99515 0.96904 0.90744 1.22083 0.86780 0.98222 0.98782 1.61502 1.04625 1.04094 1.54903 1.22423 0.96128 0.95727 0.97776 1.21778 0.95606 0.93265 0.96838 1.20744 0.89886 0.82547 0.83708 1.90457 1.51713 1.67744 1.39753 1.41955 1.18915 1.19930 1.40632 1.19625 0.97004 1.03914 1.25496 0.90161 1.26010 1.02345 0.97236 0.95721 1.69668 1.37143 1.20760 1.28768 0.85007 0.77588 0.77435 0.78424 1.19652 1.19758 1.19741 1.22151 0.92449 0.98906 0.87486 0.74463 0.87780 0.87419 0.92611 0.93011 0.86351 0.85757 0.90074 0.88763 0.90710 0.89839 0.88668 0.93783 0.89807 0.95710 0.92558 0.87725 0.92093 0.77229 0.91433 0.90493 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.35 19.25 74.32 1.43 -1.92 16 2 C -0.22 -3.57 13.34 31.13 0.42 -3.16 16 3 C -0.01 -0.12 5.70 28.79 0.16 0.05 16 4 C -0.09 -1.40 4.46 30.60 0.14 -1.26 16 5 C -0.13 -1.50 4.89 29.85 0.15 -1.35 16 6 C 0.52 10.88 7.85 87.66 0.69 11.57 16 7 O -0.59 -17.97 16.24 -3.02 -0.05 -18.02 16 8 N -0.62 -11.45 3.33 -811.79 -2.70 -14.15 16 9 C 0.10 1.32 6.49 86.73 0.56 1.88 16 10 C -0.11 -1.92 6.20 31.78 0.20 -1.72 16 11 C -0.09 -1.80 3.00 -9.40 -0.03 -1.83 16 12 H 0.07 1.65 6.68 -2.38 -0.02 1.63 16 13 C 0.07 1.42 4.43 86.30 0.38 1.81 16 14 N -0.53 -15.29 4.23 -927.02 -3.92 -19.22 16 15 C 0.03 0.80 9.18 127.69 1.17 1.98 16 16 C 0.06 1.87 5.30 85.56 0.45 2.32 16 17 C 0.44 20.43 7.52 87.66 0.66 21.09 16 18 O -0.61 -32.33 13.88 -3.06 -0.04 -32.38 16 19 N -0.58 -29.10 5.29 -306.98 -1.62 -30.72 16 20 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 24 Si 0.99 42.49 29.55 68.60 2.03 44.51 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 C 0.11 2.19 6.38 86.85 0.55 2.74 16 29 H 0.24 1.93 7.80 -4.42 -0.03 1.90 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 1.39 8.03 -2.39 -0.02 1.37 16 40 H 0.10 1.64 7.87 -2.38 -0.02 1.63 16 41 H 0.04 0.86 8.05 -2.39 -0.02 0.84 16 42 H 0.08 2.00 7.97 -2.39 -0.02 1.98 16 43 H 0.02 0.66 8.13 -2.39 -0.02 0.64 16 44 H 0.06 2.14 5.90 -2.39 -0.01 2.13 16 45 H 0.10 3.12 6.44 -2.39 -0.02 3.10 16 46 H 0.06 1.87 8.12 -2.39 -0.02 1.85 16 47 H 0.39 19.08 7.90 -92.71 -0.73 18.35 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.08 1.36 8.04 -2.39 -0.02 1.34 16 50 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 Total: -1.00 -74.69 413.69 2.38 -72.31 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.19 Total: 32.66 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 8.21 Total: 14.25 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -7.96 Total: -113.35 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.09 Total: -50.40 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -74.69 2.38 -72.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481484689.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.081 kcal (2) G-P(sol) polarization free energy of solvation -74.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds