Wall clock time and date at job start Tue Mar 31 2020 18:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99910 * 2 1 4 4 O 1.21274 * 120.00286 * 180.02562 * 3 2 1 5 5 C 1.50707 * 119.99633 * 359.97438 * 3 2 1 6 6 H 1.09000 * 115.55478 * 34.27590 * 5 3 2 7 7 C 1.53005 * 117.49517 * 248.61068 * 5 3 2 8 8 C 1.53006 * 60.03158 * 252.47513 * 7 5 3 9 9 H 1.08995 * 117.49821 * 107.50061 * 8 7 5 10 10 C 1.52997 * 117.50037 * 252.52599 * 8 7 5 11 11 C 1.53004 * 117.50016 * 197.35431 * 10 8 7 12 12 C 1.52995 * 117.49996 * 128.69264 * 10 8 7 13 13 C 1.46497 * 120.00548 * 179.97438 * 2 1 3 14 14 H 1.08999 * 110.29159 * 179.30439 * 13 2 1 15 15 C 1.54259 * 110.32472 * 57.16709 * 13 2 1 16 16 C 1.54376 * 105.06384 * 241.10831 * 15 13 2 17 17 N 1.48560 * 104.59441 * 23.85191 * 16 15 13 18 18 C 1.46898 * 110.99882 * 200.95787 * 17 16 15 19 19 C 1.50695 * 109.47178 * 176.48764 * 18 17 16 20 20 O 1.21297 * 120.00207 * 6.05638 * 19 18 17 21 21 N 1.34777 * 120.00108 * 186.05865 * 19 18 17 22 22 C 1.37100 * 119.99828 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00510 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99778 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00153 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 120.00335 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47138 * 90.00132 * 26 24 22 28 28 H 1.48497 * 109.47389 * 210.00384 * 26 24 22 29 29 H 1.48501 * 109.46670 * 329.99988 * 26 24 22 30 30 C 1.48818 * 104.23875 * 320.49240 * 17 16 15 31 31 H 1.08997 * 109.47063 * 90.00902 * 1 2 3 32 32 H 1.09000 * 109.46666 * 210.00013 * 1 2 3 33 33 H 1.08996 * 109.47619 * 330.00097 * 1 2 3 34 34 H 1.09001 * 117.50028 * 359.97438 * 7 5 3 35 35 H 1.08999 * 117.49683 * 144.98041 * 7 5 3 36 36 H 1.09004 * 115.54612 * 343.02254 * 10 8 7 37 37 H 1.09001 * 117.49739 * 359.97438 * 11 10 8 38 38 H 1.08996 * 117.49826 * 145.01681 * 11 10 8 39 39 H 1.09003 * 117.50196 * 214.97872 * 12 10 8 40 40 H 1.08998 * 117.50022 * 359.97438 * 12 10 8 41 41 H 1.08999 * 110.32129 * 0.02562 * 15 13 2 42 42 H 1.09000 * 110.32181 * 122.20817 * 15 13 2 43 43 H 1.09002 * 110.41236 * 142.63775 * 16 15 13 44 44 H 1.09001 * 110.41236 * 264.95564 * 16 15 13 45 45 H 1.09003 * 109.47273 * 296.49054 * 18 17 16 46 46 H 1.09006 * 109.47040 * 56.49111 * 18 17 16 47 47 H 0.96999 * 120.00216 * 359.97438 * 21 19 18 48 48 H 0.97004 * 120.00348 * 180.02562 * 25 24 22 49 49 H 1.08997 * 110.45413 * 280.77605 * 30 17 16 50 50 H 1.08996 * 110.49845 * 158.24508 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 -0.0006 6 1 0.4462 2.4733 0.5529 7 6 1.4611 3.3313 -1.2645 8 6 2.2069 3.7639 -0.0005 9 1 3.2928 3.6698 0.0002 10 6 1.6471 4.9570 0.7766 11 6 2.5757 5.6459 1.7787 12 6 1.4186 4.7774 2.2787 13 6 2.1976 -1.2686 0.0006 14 1 3.2719 -1.0848 -0.0119 15 6 1.7864 -2.1254 -1.2145 16 6 1.1849 -3.4133 -0.6122 17 7 0.7381 -3.0172 0.7481 18 6 0.6045 -4.1911 1.6209 19 6 0.2345 -3.7437 3.0115 20 8 -0.0117 -2.5758 3.2275 21 7 0.1772 -4.6412 4.0154 22 6 -0.1600 -4.2341 5.2804 23 1 -0.3792 -3.1942 5.4727 24 6 -0.2185 -5.1593 6.3154 25 7 -0.5422 -4.7693 7.5278 26 14 0.1614 -6.9579 5.9832 27 1 1.6129 -7.2017 6.1797 28 1 -0.6148 -7.8091 6.9202 29 1 -0.2120 -7.2926 4.5854 30 6 1.8120 -2.1099 1.2364 31 1 -0.3633 -0.0002 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 2.0565 2.9526 -2.0954 35 1 0.5720 3.8971 -1.5426 36 1 0.9412 5.5836 0.2315 37 1 3.5852 5.2488 1.8847 38 1 2.4804 6.7257 1.8932 39 1 0.5626 5.2861 2.7220 40 1 1.6666 3.8090 2.7133 41 1 1.0398 -1.6018 -1.8116 42 1 2.6591 -2.3635 -1.8226 43 1 0.3368 -3.7513 -1.2076 44 1 1.9423 -4.1949 -0.5529 45 1 -0.1740 -4.8470 1.2311 46 1 1.5515 -4.7300 1.6526 47 1 0.3737 -5.5752 3.8427 48 1 -0.5827 -5.4151 8.2505 49 1 2.6683 -2.6867 1.5858 50 1 1.4358 -1.4666 2.0317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481743317.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:12 Heat of formation + Delta-G solvation = 4.076679 kcal Electronic energy + Delta-G solvation = -29389.252723 eV Core-core repulsion = 25418.808862 eV Total energy + Delta-G solvation = -3970.443861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.50907 -39.27167 -38.19956 -37.44192 -35.08062 -34.98490 -33.96170 -31.77549 -31.33600 -28.72955 -27.14306 -26.47357 -25.01455 -24.00744 -23.48646 -22.54207 -21.21442 -20.90102 -19.98173 -19.38447 -18.80445 -18.26736 -17.46948 -16.59288 -15.96817 -15.81587 -15.52610 -15.32140 -15.11350 -14.86535 -14.62454 -14.31746 -13.80714 -13.48044 -13.28805 -13.06267 -12.86724 -12.54633 -12.46572 -12.36871 -12.05288 -11.99570 -11.86660 -11.81708 -11.78634 -11.55182 -11.45586 -11.32670 -11.09930 -11.04033 -10.99941 -10.82554 -10.61412 -10.23250 -9.99955 -9.88318 -9.65623 -9.57338 -8.70244 -8.51883 -8.22860 -8.14550 -6.33388 -3.84876 2.45895 2.94311 3.00406 3.04749 3.13240 3.45812 3.70600 3.78541 3.98459 4.08279 4.29559 4.46177 4.55650 4.58003 4.70168 4.78377 4.87374 4.88137 4.97717 5.05744 5.07992 5.19506 5.23108 5.33501 5.36242 5.42876 5.48880 5.50071 5.56606 5.59793 5.66244 5.68436 5.73450 5.77286 5.81703 5.86919 5.92164 5.92603 5.97610 6.02089 6.09781 6.18369 6.37125 6.63157 6.96054 7.05560 7.46074 7.55618 8.11715 8.20547 8.57299 8.92645 9.39844 9.80013 10.79667 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.002681 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.531574 B =10441.764443 C =12046.158224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.593 5.593 3 C 0.543 3.457 4 O -0.550 6.550 5 C -0.183 4.183 6 H 0.128 0.872 7 C -0.143 4.143 8 C -0.091 4.091 9 H 0.118 0.882 10 C -0.129 4.129 11 C -0.175 4.175 12 C -0.176 4.176 13 C 0.135 3.865 14 H 0.103 0.897 15 C -0.131 4.131 16 C 0.029 3.971 17 N -0.485 5.485 18 C 0.031 3.969 19 C 0.451 3.549 20 O -0.560 6.560 21 N -0.590 5.590 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 C 0.025 3.975 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.048 0.952 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 10.726 -19.524 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.324 5.324 3 C 0.332 3.668 4 O -0.429 6.429 5 C -0.204 4.204 6 H 0.145 0.855 7 C -0.181 4.181 8 C -0.109 4.109 9 H 0.136 0.864 10 C -0.147 4.147 11 C -0.212 4.212 12 C -0.213 4.213 13 C 0.031 3.969 14 H 0.121 0.879 15 C -0.170 4.170 16 C -0.099 4.099 17 N -0.209 5.209 18 C -0.101 4.101 19 C 0.237 3.763 20 O -0.442 6.442 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.195 1.195 30 C -0.104 4.104 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.066 0.934 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.356 11.696 -19.130 22.672 hybrid contribution 0.819 -2.197 0.076 2.346 sum 4.175 9.499 -19.055 21.697 Atomic orbital electron populations 1.21943 0.78579 1.05051 1.01397 1.47715 1.07549 1.04907 1.72251 1.19692 0.87208 0.84522 0.75399 1.90653 1.13977 1.87355 1.50909 1.22363 1.02647 0.90187 1.05164 0.85461 1.23012 1.02794 1.01243 0.91036 1.21821 0.98752 0.91579 0.98761 0.86428 1.21764 1.02978 0.98589 0.91355 1.22995 0.96023 0.98643 1.03529 1.23017 1.00337 1.02106 0.95802 1.21856 0.97331 0.82989 0.94721 0.87869 1.22668 1.01072 0.95809 0.97465 1.23173 0.99023 0.96304 0.91421 1.65280 1.41348 1.13464 1.00836 1.22116 1.01142 0.93080 0.93748 1.19599 0.84582 0.86840 0.85286 1.90531 1.52918 1.17405 1.83377 1.42217 1.63044 1.08636 1.09077 1.19415 1.43730 0.98222 0.81922 0.86271 1.25037 0.97563 0.98439 0.95093 1.69619 1.47163 1.35103 1.00193 0.86682 0.79221 0.85101 0.78447 1.19671 1.20146 1.19487 1.23652 0.92983 0.96058 0.97683 0.93254 0.87823 0.91479 0.88354 0.87810 0.87466 0.88611 0.88795 0.88679 0.88379 0.90328 0.90811 0.89936 0.93778 0.88881 0.93255 0.79734 0.91594 0.93383 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 9.29 59.85 0.56 1.41 16 2 N -0.59 -7.89 2.74 -172.35 -0.47 -8.37 16 3 C 0.54 7.66 7.46 -10.98 -0.08 7.58 16 4 O -0.55 -9.47 15.62 5.56 0.09 -9.39 16 5 C -0.18 -1.99 4.94 -91.73 -0.45 -2.45 16 6 H 0.13 1.29 6.44 -51.93 -0.33 0.95 16 7 C -0.14 -1.25 9.95 -26.73 -0.27 -1.52 16 8 C -0.09 -0.92 5.39 -90.58 -0.49 -1.41 16 9 H 0.12 1.40 7.67 -51.93 -0.40 1.00 16 10 C -0.13 -1.13 5.87 -90.62 -0.53 -1.66 16 11 C -0.17 -1.51 10.26 -26.69 -0.27 -1.78 16 12 C -0.18 -1.65 10.18 -26.70 -0.27 -1.92 16 13 C 0.14 1.83 3.46 -66.55 -0.23 1.60 16 14 H 0.10 1.50 6.96 -51.93 -0.36 1.14 16 15 C -0.13 -1.41 6.47 -25.35 -0.16 -1.57 16 16 C 0.03 0.33 6.49 -2.18 -0.01 0.31 16 17 N -0.49 -7.25 4.05 -231.18 -0.94 -8.18 16 18 C 0.03 0.50 5.39 -4.98 -0.03 0.47 16 19 C 0.45 9.93 7.43 -10.99 -0.08 9.85 16 20 O -0.56 -14.33 14.01 5.54 0.08 -14.25 16 21 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 22 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 23 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.61 13.96 55.50 0.77 -24.83 16 26 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 29 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 30 C 0.02 0.39 4.58 -2.03 -0.01 0.38 16 31 H 0.05 0.48 7.88 -51.93 -0.41 0.07 16 32 H 0.10 1.48 6.31 -51.93 -0.33 1.16 16 33 H 0.07 0.72 5.99 -51.93 -0.31 0.40 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.81 7.17 -51.93 -0.37 0.44 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.46 7.92 -51.93 -0.41 0.05 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 47 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 48 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.05 0.76 7.96 -51.93 -0.41 0.35 16 50 H 0.11 2.19 6.46 -51.93 -0.34 1.86 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -32.95 398.36 -9.93 -42.88 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -8.11 Total: 13.83 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.58 Total: 1.68 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.69 Total: -55.26 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.16 Total: -23.64 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.95 -9.93 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481743317.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.953 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds