Wall clock time and date at job start Tue Mar 31 2020 18:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99910 * 2 1 4 4 O 1.21274 * 120.00286 * 180.02562 * 3 2 1 5 5 C 1.50707 * 119.99633 * 359.97438 * 3 2 1 6 6 H 1.09000 * 115.55478 * 34.27590 * 5 3 2 7 7 C 1.53005 * 117.49517 * 248.61068 * 5 3 2 8 8 C 1.53006 * 60.03158 * 252.47513 * 7 5 3 9 9 H 1.08995 * 117.49821 * 107.50061 * 8 7 5 10 10 C 1.52997 * 117.50037 * 252.52599 * 8 7 5 11 11 C 1.53004 * 117.50016 * 197.35431 * 10 8 7 12 12 C 1.52995 * 117.49996 * 128.69264 * 10 8 7 13 13 C 1.46497 * 120.00548 * 179.97438 * 2 1 3 14 14 H 1.08999 * 110.29159 * 179.30439 * 13 2 1 15 15 C 1.54259 * 110.32472 * 57.16709 * 13 2 1 16 16 C 1.54376 * 105.06384 * 241.10831 * 15 13 2 17 17 N 1.48560 * 104.59441 * 23.85191 * 16 15 13 18 18 C 1.46898 * 110.99882 * 200.95787 * 17 16 15 19 19 C 1.50695 * 109.47178 * 176.48764 * 18 17 16 20 20 O 1.21297 * 120.00207 * 6.05638 * 19 18 17 21 21 N 1.34777 * 120.00108 * 186.05865 * 19 18 17 22 22 C 1.37100 * 119.99828 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00510 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99778 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00153 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 120.00335 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47138 * 90.00132 * 26 24 22 28 28 H 1.48497 * 109.47389 * 210.00384 * 26 24 22 29 29 H 1.48501 * 109.46670 * 329.99988 * 26 24 22 30 30 C 1.48818 * 104.23875 * 320.49240 * 17 16 15 31 31 H 1.08997 * 109.47063 * 90.00902 * 1 2 3 32 32 H 1.09000 * 109.46666 * 210.00013 * 1 2 3 33 33 H 1.08996 * 109.47619 * 330.00097 * 1 2 3 34 34 H 1.09001 * 117.50028 * 359.97438 * 7 5 3 35 35 H 1.08999 * 117.49683 * 144.98041 * 7 5 3 36 36 H 1.09004 * 115.54612 * 343.02254 * 10 8 7 37 37 H 1.09001 * 117.49739 * 359.97438 * 11 10 8 38 38 H 1.08996 * 117.49826 * 145.01681 * 11 10 8 39 39 H 1.09003 * 117.50196 * 214.97872 * 12 10 8 40 40 H 1.08998 * 117.50022 * 359.97438 * 12 10 8 41 41 H 1.08999 * 110.32129 * 0.02562 * 15 13 2 42 42 H 1.09000 * 110.32181 * 122.20817 * 15 13 2 43 43 H 1.09002 * 110.41236 * 142.63775 * 16 15 13 44 44 H 1.09001 * 110.41236 * 264.95564 * 16 15 13 45 45 H 1.09003 * 109.47273 * 296.49054 * 18 17 16 46 46 H 1.09006 * 109.47040 * 56.49111 * 18 17 16 47 47 H 0.96999 * 120.00216 * 359.97438 * 21 19 18 48 48 H 0.97004 * 120.00348 * 180.02562 * 25 24 22 49 49 H 1.08997 * 110.45413 * 280.77605 * 30 17 16 50 50 H 1.08996 * 110.49845 * 158.24508 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 -0.0006 6 1 0.4462 2.4733 0.5529 7 6 1.4611 3.3313 -1.2645 8 6 2.2069 3.7639 -0.0005 9 1 3.2928 3.6698 0.0002 10 6 1.6471 4.9570 0.7766 11 6 2.5757 5.6459 1.7787 12 6 1.4186 4.7774 2.2787 13 6 2.1976 -1.2686 0.0006 14 1 3.2719 -1.0848 -0.0119 15 6 1.7864 -2.1254 -1.2145 16 6 1.1849 -3.4133 -0.6122 17 7 0.7381 -3.0172 0.7481 18 6 0.6045 -4.1911 1.6209 19 6 0.2345 -3.7437 3.0115 20 8 -0.0117 -2.5758 3.2275 21 7 0.1772 -4.6412 4.0154 22 6 -0.1600 -4.2341 5.2804 23 1 -0.3792 -3.1942 5.4727 24 6 -0.2185 -5.1593 6.3154 25 7 -0.5422 -4.7693 7.5278 26 14 0.1614 -6.9579 5.9832 27 1 1.6129 -7.2017 6.1797 28 1 -0.6148 -7.8091 6.9202 29 1 -0.2120 -7.2926 4.5854 30 6 1.8120 -2.1099 1.2364 31 1 -0.3633 -0.0002 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 2.0565 2.9526 -2.0954 35 1 0.5720 3.8971 -1.5426 36 1 0.9412 5.5836 0.2315 37 1 3.5852 5.2488 1.8847 38 1 2.4804 6.7257 1.8932 39 1 0.5626 5.2861 2.7220 40 1 1.6666 3.8090 2.7133 41 1 1.0398 -1.6018 -1.8116 42 1 2.6591 -2.3635 -1.8226 43 1 0.3368 -3.7513 -1.2076 44 1 1.9423 -4.1949 -0.5529 45 1 -0.1740 -4.8470 1.2311 46 1 1.5515 -4.7300 1.6526 47 1 0.3737 -5.5752 3.8427 48 1 -0.5827 -5.4151 8.2505 49 1 2.6683 -2.6867 1.5858 50 1 1.4358 -1.4666 2.0317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481743317.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:11 Heat of formation + Delta-G solvation = -18.333246 kcal Electronic energy + Delta-G solvation = -29390.224491 eV Core-core repulsion = 25418.808862 eV Total energy + Delta-G solvation = -3971.415629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58437 -40.60462 -39.48133 -38.56838 -36.26271 -35.89414 -35.82642 -33.77196 -32.56390 -29.78512 -28.58201 -27.59197 -26.26214 -25.45113 -24.29893 -23.27929 -22.35776 -21.80983 -21.27140 -20.83180 -20.21427 -19.77705 -18.51566 -17.86433 -17.33169 -16.98275 -16.71357 -16.48581 -16.45148 -16.15744 -15.68876 -15.41646 -15.21604 -14.91044 -14.68387 -14.41655 -14.15828 -14.00866 -13.65757 -13.37939 -13.30851 -13.12357 -13.03849 -12.96735 -12.81866 -12.58769 -12.53033 -12.42791 -12.33360 -12.24875 -11.98597 -11.86842 -11.82152 -11.78577 -11.48774 -11.01246 -10.82804 -10.56235 -10.37126 -10.24806 -9.69239 -9.38663 -8.42170 -6.02742 1.28544 1.34026 1.41190 1.42939 1.93753 1.96232 2.21742 2.64605 2.66718 3.00822 3.14158 3.18596 3.43386 3.58507 3.71812 3.76501 3.78145 4.00858 4.10419 4.11490 4.15828 4.17353 4.28910 4.32994 4.33778 4.39785 4.44931 4.50367 4.55011 4.68621 4.72815 4.77977 4.78905 4.83965 4.91752 4.97899 5.01230 5.06457 5.14610 5.19275 5.20602 5.24626 5.32881 5.51518 5.54577 5.77652 5.89495 6.01740 6.39888 6.58911 6.87993 7.11337 7.39297 7.96618 8.75571 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.002681 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.531574 B =10441.764443 C =12046.158224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.594 5.594 3 C 0.534 3.466 4 O -0.591 6.591 5 C -0.195 4.195 6 H 0.135 0.865 7 C -0.115 4.115 8 C -0.100 4.100 9 H 0.094 0.906 10 C -0.120 4.120 11 C -0.175 4.175 12 C -0.188 4.188 13 C 0.135 3.865 14 H 0.088 0.912 15 C -0.119 4.119 16 C 0.034 3.966 17 N -0.498 5.498 18 C 0.042 3.958 19 C 0.450 3.550 20 O -0.603 6.603 21 N -0.593 5.593 22 C -0.325 4.325 23 H 0.055 0.945 24 C -0.016 4.016 25 N -0.936 5.936 26 Si 0.964 3.036 27 H -0.260 1.260 28 H -0.275 1.275 29 H -0.229 1.229 30 C 0.030 3.970 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.126 0.874 46 H 0.078 0.922 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.042 0.958 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 8.958 -23.270 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.324 5.324 3 C 0.325 3.675 4 O -0.473 6.473 5 C -0.215 4.215 6 H 0.153 0.847 7 C -0.152 4.152 8 C -0.119 4.119 9 H 0.112 0.888 10 C -0.138 4.138 11 C -0.212 4.212 12 C -0.225 4.225 13 C 0.030 3.970 14 H 0.106 0.894 15 C -0.158 4.158 16 C -0.094 4.094 17 N -0.223 5.223 18 C -0.089 4.089 19 C 0.237 3.763 20 O -0.487 6.487 21 N -0.235 5.235 22 C -0.454 4.454 23 H 0.073 0.927 24 C -0.215 4.215 25 N -0.577 5.577 26 Si 0.784 3.216 27 H -0.185 1.185 28 H -0.200 1.200 29 H -0.152 1.152 30 C -0.099 4.099 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.096 0.904 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.060 0.940 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.927 9.921 -22.919 25.145 hybrid contribution 0.954 -1.502 1.276 2.190 sum 3.882 8.418 -21.643 23.545 Atomic orbital electron populations 1.21958 0.77504 1.04147 1.02889 1.47838 1.08228 1.04802 1.71554 1.20279 0.86978 0.85693 0.74587 1.90624 1.15742 1.87990 1.52959 1.22342 1.02683 0.88859 1.07644 0.84688 1.23138 1.03151 0.99189 0.89721 1.21804 0.97661 0.91802 1.00607 0.88814 1.21839 1.03075 0.98072 0.90767 1.23067 0.95216 0.99611 1.03257 1.22996 1.01389 1.01359 0.96721 1.21816 0.96630 0.83309 0.95199 0.89415 1.22636 1.02105 0.94954 0.96088 1.23285 1.00426 0.96776 0.88872 1.65250 1.41377 1.13224 1.02400 1.22075 1.03431 0.93833 0.89600 1.20877 0.82031 0.85997 0.87345 1.90531 1.53935 1.19615 1.84635 1.42050 1.63901 1.09861 1.07737 1.18972 1.45672 0.95965 0.84822 0.92734 1.26108 0.96474 1.04791 0.94080 1.69806 1.48528 1.37620 1.01715 0.85379 0.79390 0.76391 0.80456 1.18452 1.20010 1.15230 1.23412 0.92812 0.96138 0.97543 0.90348 0.90351 0.90808 0.88449 0.84731 0.85026 0.89799 0.86783 0.87329 0.90943 0.89382 0.88806 0.87656 0.92001 0.85582 0.90435 0.77583 0.91192 0.93982 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.77 9.29 127.77 1.19 2.96 16 2 N -0.59 -15.99 2.74 -817.58 -2.24 -18.23 16 3 C 0.53 15.55 7.46 87.66 0.65 16.21 16 4 O -0.59 -21.45 15.62 -3.01 -0.05 -21.50 16 5 C -0.19 -4.21 4.94 -11.51 -0.06 -4.27 16 6 H 0.14 2.68 6.44 -2.39 -0.02 2.67 16 7 C -0.11 -1.78 9.95 30.60 0.30 -1.48 16 8 C -0.10 -2.02 5.39 -10.77 -0.06 -2.08 16 9 H 0.09 2.36 7.67 -2.39 -0.02 2.35 16 10 C -0.12 -1.98 5.87 -10.80 -0.06 -2.04 16 11 C -0.17 -2.97 10.26 30.62 0.31 -2.66 16 12 C -0.19 -3.57 10.18 30.62 0.31 -3.26 16 13 C 0.14 3.64 3.46 45.89 0.16 3.80 16 14 H 0.09 2.63 6.96 -2.39 -0.02 2.62 16 15 C -0.12 -2.22 6.47 31.49 0.20 -2.02 16 16 C 0.03 0.62 6.49 86.45 0.56 1.18 16 17 N -0.50 -14.05 4.05 -885.32 -3.59 -17.63 16 18 C 0.04 1.24 5.39 85.56 0.46 1.70 16 19 C 0.45 19.96 7.43 87.66 0.65 20.61 16 20 O -0.60 -32.62 14.01 -3.08 -0.04 -32.67 16 21 N -0.59 -27.81 5.09 -306.98 -1.56 -29.38 16 22 C -0.33 -19.04 10.16 84.04 0.85 -18.19 16 23 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 24 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 25 N -0.94 -56.77 13.96 21.66 0.30 -56.47 16 26 Si 0.96 38.83 27.74 68.60 1.90 40.73 16 27 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 28 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 29 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 30 C 0.03 0.97 4.58 86.40 0.40 1.37 16 31 H 0.08 1.35 7.88 -2.39 -0.02 1.33 16 32 H 0.08 2.26 6.31 -2.39 -0.02 2.24 16 33 H 0.07 1.57 5.99 -2.39 -0.01 1.55 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.09 1.51 7.17 -2.39 -0.02 1.49 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 0.98 7.92 -2.39 -0.02 0.96 16 45 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.08 1.92 7.98 -2.38 -0.02 1.90 16 47 H 0.39 15.07 5.76 -92.71 -0.53 14.53 16 48 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 49 H 0.04 1.37 7.96 -2.39 -0.02 1.35 16 50 H 0.06 2.68 6.46 -2.39 -0.02 2.67 16 Total: -1.00 -80.89 398.36 1.42 -79.47 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: 0.35 Total: 44.27 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.34 Total: 11.41 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -7.09 Total: -121.71 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -0.09 Total: -54.17 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.73 kcal Total: -80.89 1.42 -79.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481743317.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.136 kcal (2) G-P(sol) polarization free energy of solvation -80.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds