Wall clock time and date at job start Tue Mar 31 2020 18:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99877 * 2 1 4 4 O 1.21283 * 120.00007 * 5.02704 * 3 2 1 5 5 C 1.50699 * 119.99832 * 185.01569 * 3 2 1 6 6 C 1.50703 * 112.85270 * 305.43716 * 5 3 2 7 7 O 1.21273 * 119.99976 * 113.62075 * 6 5 3 8 8 N 1.34775 * 119.99940 * 293.61645 * 6 5 3 9 9 C 1.46599 * 119.68373 * 354.96141 * 8 6 5 10 10 C 1.54160 * 110.62392 * 132.19719 * 9 8 6 11 11 C 1.51519 * 107.33147 * 50.98565 * 10 9 8 12 12 H 1.09008 * 108.81263 * 53.54606 * 11 10 9 13 13 C 1.55462 * 107.78001 * 295.25019 * 11 10 9 14 14 H 1.09006 * 111.49911 * 308.81244 * 13 11 10 15 15 C 1.53736 * 100.18061 * 190.94624 * 13 11 10 16 16 C 1.55286 * 101.87483 * 39.09090 * 15 13 11 17 17 N 1.45469 * 117.34043 * 178.20522 * 11 10 9 18 18 C 1.36940 * 126.40223 * 329.33360 * 17 11 10 19 19 H 1.07995 * 119.99987 * 355.30273 * 18 17 11 20 20 C 1.38813 * 120.00032 * 175.30617 * 18 17 11 21 21 N 1.31620 * 119.99558 * 5.80719 * 20 18 17 22 22 Si 1.86791 * 120.00008 * 185.81390 * 20 18 17 23 23 H 1.48500 * 109.47124 * 94.99531 * 22 20 18 24 24 H 1.48506 * 109.46904 * 214.99415 * 22 20 18 25 25 H 1.48498 * 109.47281 * 334.99528 * 22 20 18 26 26 C 1.47713 * 119.68851 * 174.93570 * 8 6 5 27 27 C 1.53785 * 113.68828 * 76.70456 * 5 3 2 28 28 C 1.53783 * 87.07856 * 89.12788 * 27 5 3 29 29 C 1.53771 * 87.08336 * 25.43207 * 28 27 5 30 30 H 1.08995 * 109.46844 * 59.99777 * 1 2 3 31 31 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46804 * 299.99602 * 1 2 3 33 33 H 0.97003 * 120.00158 * 180.02562 * 2 1 3 34 34 H 1.09006 * 109.25121 * 252.43648 * 9 8 6 35 35 H 1.09000 * 109.26167 * 11.90198 * 9 8 6 36 36 H 1.09002 * 109.81337 * 291.57430 * 10 9 8 37 37 H 1.08998 * 109.96029 * 170.48801 * 10 9 8 38 38 H 1.09001 * 110.95198 * 280.92943 * 15 13 11 39 39 H 1.09001 * 110.95410 * 157.24098 * 15 13 11 40 40 H 1.08997 * 109.92537 * 96.84635 * 16 15 13 41 41 H 1.09003 * 109.91731 * 217.95142 * 16 15 13 42 42 H 0.96997 * 119.99909 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.07681 * 112.87166 * 26 8 6 44 44 H 1.09007 * 110.06760 * 351.29314 * 26 8 6 45 45 H 1.09001 * 113.61520 * 203.66891 * 27 5 3 46 46 H 1.08998 * 113.61770 * 334.57696 * 27 5 3 47 47 H 1.09003 * 113.61444 * 270.88048 * 28 27 5 48 48 H 1.09003 * 113.61652 * 139.98264 * 28 27 5 49 49 H 1.09004 * 113.61652 * 220.01877 * 29 28 27 50 50 H 1.09005 * 113.69382 * 89.13312 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 0.0920 5 6 3.6416 1.1697 -0.1141 6 6 4.3095 0.3168 0.9335 7 8 4.9114 -0.6841 0.6071 8 7 4.2379 0.6664 2.2332 9 6 3.6050 1.9338 2.6102 10 6 2.6062 1.7197 3.7648 11 6 3.3322 0.9564 4.8539 12 1 4.2496 1.4891 5.1047 13 6 3.6936 -0.4466 4.2902 14 1 2.8240 -0.9377 3.8533 15 6 4.1426 -1.1506 5.5810 16 6 3.1199 -0.6056 6.6147 17 7 2.5943 0.6699 6.0744 18 6 1.6000 1.4361 6.6218 19 1 1.3484 2.3894 6.1812 20 6 0.9154 0.9872 7.7428 21 7 1.2962 -0.1180 8.3477 22 14 -0.5462 1.9517 8.3928 23 1 -1.8007 1.3840 7.8368 24 1 -0.5776 1.8640 9.8750 25 1 -0.4225 3.3738 7.9836 26 6 4.7974 -0.2313 3.2642 27 6 4.1533 0.9071 -1.5403 28 6 4.0809 2.4272 -1.7617 29 6 4.2474 2.5775 -0.2404 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.9501 -0.8401 -0.0004 34 1 4.3734 2.6390 2.9272 35 1 3.0761 2.3419 1.7488 36 1 1.7526 1.1406 3.4123 37 1 2.2690 2.6825 4.1485 38 1 5.1591 -0.8622 5.8489 39 1 4.0594 -2.2331 5.4839 40 1 2.3054 -1.3184 6.7427 41 1 3.6146 -0.4317 7.5703 42 1 0.8182 -0.4314 9.1313 43 1 5.6618 0.2348 3.7370 44 1 5.0827 -1.1833 2.8163 45 1 5.1674 0.5088 -1.5739 46 1 3.4550 0.3421 -2.1577 47 1 3.1141 2.7691 -2.1311 48 1 4.9187 2.8255 -2.3341 49 1 3.6250 3.3611 0.1917 50 1 5.2868 2.6362 0.0828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482664931.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:15 Heat of formation + Delta-G solvation = -12.506728 kcal Electronic energy + Delta-G solvation = -31586.662926 eV Core-core repulsion = 27615.499954 eV Total energy + Delta-G solvation = -3971.162972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62839 -39.53225 -38.38744 -37.15643 -35.45671 -34.74248 -32.71788 -31.57666 -29.95449 -28.69678 -28.00787 -26.15513 -25.79942 -24.84978 -23.45095 -22.36864 -21.75751 -20.49326 -20.06641 -19.50742 -19.19999 -17.79480 -16.55542 -16.40690 -16.24160 -15.93857 -15.29006 -15.11044 -15.06725 -14.68997 -14.49908 -14.05333 -13.86830 -13.54703 -13.39022 -13.04288 -12.93398 -12.72008 -12.55617 -12.45633 -12.34182 -12.17940 -11.68412 -11.54901 -11.47973 -11.43307 -11.24347 -10.88947 -10.82454 -10.70518 -10.62318 -10.19909 -10.10506 -10.08076 -9.90000 -9.64967 -9.59130 -9.46854 -9.31320 -8.61651 -8.57200 -6.85271 -5.73938 -3.06157 2.25569 2.47483 2.93129 2.99485 3.38996 3.44802 3.46273 4.16842 4.21424 4.35047 4.47138 4.48413 4.51349 4.98749 5.04594 5.09752 5.16625 5.23692 5.32832 5.36104 5.38418 5.50108 5.51745 5.57321 5.60101 5.64620 5.67638 5.72592 5.75327 5.81470 5.86462 5.99084 6.07369 6.12894 6.16892 6.17723 6.23800 6.32848 6.45039 6.58222 6.62931 6.80394 7.04078 7.20755 7.38281 7.51898 7.61413 7.79430 7.95060 8.06539 8.22784 9.17956 9.81520 10.49609 11.38807 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003840 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.104147 B = 7289.229075 C = 8115.184624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.727 5.727 3 C 0.548 3.452 4 O -0.523 6.523 5 C -0.139 4.139 6 C 0.529 3.471 7 O -0.540 6.540 8 N -0.597 5.597 9 C 0.097 3.903 10 C -0.125 4.125 11 C 0.168 3.832 12 H 0.019 0.981 13 C -0.124 4.124 14 H 0.078 0.922 15 C -0.135 4.135 16 C 0.176 3.824 17 N -0.594 5.594 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.126 3.874 27 C -0.100 4.100 28 C -0.140 4.140 29 C -0.112 4.112 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.405 0.595 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.252 0.748 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 0.545 -19.214 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.378 5.378 3 C 0.332 3.668 4 O -0.399 6.399 5 C -0.145 4.145 6 C 0.315 3.685 7 O -0.418 6.418 8 N -0.328 5.328 9 C -0.026 4.026 10 C -0.164 4.164 11 C 0.060 3.940 12 H 0.036 0.964 13 C -0.144 4.144 14 H 0.096 0.904 15 C -0.174 4.174 16 C 0.052 3.948 17 N -0.318 5.318 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.004 3.996 27 C -0.138 4.138 28 C -0.178 4.178 29 C -0.149 4.149 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.239 0.761 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.112 0.888 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.226 0.788 -19.083 19.801 hybrid contribution -0.715 0.022 0.644 0.963 sum 4.511 0.809 -18.439 19.000 Atomic orbital electron populations 1.21600 0.78823 1.02626 1.02602 1.45718 1.08138 1.08650 1.75294 1.19398 0.87583 0.84016 0.75776 1.90724 1.69308 1.31209 1.48678 1.22367 0.93558 1.00526 0.98063 1.19942 0.80582 0.85072 0.82888 1.90679 1.43484 1.26822 1.80808 1.48313 1.57211 1.21713 1.05586 1.22152 0.96401 0.84263 0.99807 1.21867 0.97715 1.01992 0.94798 1.20660 0.93866 0.92416 0.87093 0.96380 1.22633 0.97758 0.99295 0.94712 0.90353 1.22707 0.99893 0.99055 0.95743 1.21537 0.93405 0.87417 0.92458 1.44190 1.41360 1.24044 1.22248 1.19004 1.08327 0.99572 1.08489 0.90387 1.24798 0.99520 0.97677 0.98267 1.69948 1.41392 1.23509 1.21893 0.86161 0.82945 0.79098 0.77983 1.21677 1.21771 1.20609 1.21661 0.95842 0.94105 0.87951 1.22797 1.02800 0.97295 0.90949 1.22880 1.02938 0.95719 0.96225 1.22945 1.01387 0.93328 0.97274 0.92144 0.90432 0.91553 0.76149 0.91484 0.88972 0.91702 0.90535 0.92313 0.92076 0.92557 0.94524 0.93778 0.91134 0.89238 0.87972 0.90686 0.89522 0.90448 0.88835 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.71 59.85 0.64 1.49 16 2 N -0.73 -8.14 5.65 -67.08 -0.38 -8.52 16 3 C 0.55 7.05 5.38 -10.99 -0.06 6.99 16 4 O -0.52 -8.02 14.96 5.56 0.08 -7.94 16 5 C -0.14 -1.61 0.58 -156.00 -0.09 -1.70 16 6 C 0.53 7.32 6.35 -10.98 -0.07 7.25 16 7 O -0.54 -8.56 15.55 5.56 0.09 -8.47 16 8 N -0.60 -8.55 3.00 -172.36 -0.52 -9.07 16 9 C 0.10 1.39 5.47 -3.38 -0.02 1.37 16 10 C -0.12 -2.22 5.51 -26.87 -0.15 -2.36 16 11 C 0.17 3.35 2.57 -67.93 -0.17 3.18 16 12 H 0.02 0.38 7.92 -51.92 -0.41 -0.03 16 13 C -0.12 -2.16 2.86 -89.32 -0.26 -2.42 16 14 H 0.08 1.48 8.13 -51.93 -0.42 1.06 16 15 C -0.14 -2.46 6.53 -25.14 -0.16 -2.63 16 16 C 0.18 4.19 5.47 -1.92 -0.01 4.18 16 17 N -0.59 -14.75 3.35 -163.03 -0.55 -15.29 16 18 C -0.23 -6.15 9.85 -15.06 -0.15 -6.30 16 19 H 0.08 2.06 7.28 -52.49 -0.38 1.68 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 21 N -0.92 -26.77 10.47 55.49 0.58 -26.19 16 22 Si 0.91 21.99 29.56 -169.99 -5.02 16.97 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.13 1.88 5.94 -3.76 -0.02 1.86 16 27 C -0.10 -0.96 6.89 -25.92 -0.18 -1.14 16 28 C -0.14 -1.22 7.80 -25.92 -0.20 -1.42 16 29 C -0.11 -1.13 5.60 -25.92 -0.15 -1.28 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 4.13 8.59 -40.82 -0.35 3.78 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.29 2.99 -51.93 -0.16 1.13 16 36 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 37 H 0.08 1.41 7.64 -51.93 -0.40 1.01 16 38 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.49 7.11 -51.93 -0.37 1.12 16 41 H 0.04 0.96 7.86 -51.93 -0.41 0.55 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 44 H 0.09 1.33 7.03 -51.93 -0.37 0.97 16 45 H 0.10 1.00 7.73 -51.93 -0.40 0.59 16 46 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 1.03 6.55 -51.93 -0.34 0.69 16 50 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -32.04 381.49 -9.31 -41.35 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.20 Total: 4.61 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.14 Total: 6.80 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.86 Total: -59.06 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.17 Total: -16.41 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.04 -9.31 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482664931.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.844 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds