Wall clock time and date at job start Tue Mar 31 2020 18:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99877 * 2 1 4 4 O 1.21283 * 120.00007 * 5.02704 * 3 2 1 5 5 C 1.50699 * 119.99832 * 185.01569 * 3 2 1 6 6 C 1.50703 * 112.85270 * 305.43716 * 5 3 2 7 7 O 1.21273 * 119.99976 * 113.62075 * 6 5 3 8 8 N 1.34775 * 119.99940 * 293.61645 * 6 5 3 9 9 C 1.46599 * 119.68373 * 354.96141 * 8 6 5 10 10 C 1.54160 * 110.62392 * 132.19719 * 9 8 6 11 11 C 1.51519 * 107.33147 * 50.98565 * 10 9 8 12 12 H 1.09008 * 108.81263 * 53.54606 * 11 10 9 13 13 C 1.55462 * 107.78001 * 295.25019 * 11 10 9 14 14 H 1.09006 * 111.49911 * 308.81244 * 13 11 10 15 15 C 1.53736 * 100.18061 * 190.94624 * 13 11 10 16 16 C 1.55286 * 101.87483 * 39.09090 * 15 13 11 17 17 N 1.45469 * 117.34043 * 178.20522 * 11 10 9 18 18 C 1.36940 * 126.40223 * 329.33360 * 17 11 10 19 19 H 1.07995 * 119.99987 * 355.30273 * 18 17 11 20 20 C 1.38813 * 120.00032 * 175.30617 * 18 17 11 21 21 N 1.31620 * 119.99558 * 5.80719 * 20 18 17 22 22 Si 1.86791 * 120.00008 * 185.81390 * 20 18 17 23 23 H 1.48500 * 109.47124 * 94.99531 * 22 20 18 24 24 H 1.48506 * 109.46904 * 214.99415 * 22 20 18 25 25 H 1.48498 * 109.47281 * 334.99528 * 22 20 18 26 26 C 1.47713 * 119.68851 * 174.93570 * 8 6 5 27 27 C 1.53785 * 113.68828 * 76.70456 * 5 3 2 28 28 C 1.53783 * 87.07856 * 89.12788 * 27 5 3 29 29 C 1.53771 * 87.08336 * 25.43207 * 28 27 5 30 30 H 1.08995 * 109.46844 * 59.99777 * 1 2 3 31 31 H 1.09000 * 109.47124 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46804 * 299.99602 * 1 2 3 33 33 H 0.97003 * 120.00158 * 180.02562 * 2 1 3 34 34 H 1.09006 * 109.25121 * 252.43648 * 9 8 6 35 35 H 1.09000 * 109.26167 * 11.90198 * 9 8 6 36 36 H 1.09002 * 109.81337 * 291.57430 * 10 9 8 37 37 H 1.08998 * 109.96029 * 170.48801 * 10 9 8 38 38 H 1.09001 * 110.95198 * 280.92943 * 15 13 11 39 39 H 1.09001 * 110.95410 * 157.24098 * 15 13 11 40 40 H 1.08997 * 109.92537 * 96.84635 * 16 15 13 41 41 H 1.09003 * 109.91731 * 217.95142 * 16 15 13 42 42 H 0.96997 * 119.99909 * 179.97438 * 21 20 18 43 43 H 1.08999 * 110.07681 * 112.87166 * 26 8 6 44 44 H 1.09007 * 110.06760 * 351.29314 * 26 8 6 45 45 H 1.09001 * 113.61520 * 203.66891 * 27 5 3 46 46 H 1.08998 * 113.61770 * 334.57696 * 27 5 3 47 47 H 1.09003 * 113.61444 * 270.88048 * 28 27 5 48 48 H 1.09003 * 113.61652 * 139.98264 * 28 27 5 49 49 H 1.09004 * 113.61652 * 220.01877 * 29 28 27 50 50 H 1.09005 * 113.69382 * 89.13312 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 0.0920 5 6 3.6416 1.1697 -0.1141 6 6 4.3095 0.3168 0.9335 7 8 4.9114 -0.6841 0.6071 8 7 4.2379 0.6664 2.2332 9 6 3.6050 1.9338 2.6102 10 6 2.6062 1.7197 3.7648 11 6 3.3322 0.9564 4.8539 12 1 4.2496 1.4891 5.1047 13 6 3.6936 -0.4466 4.2902 14 1 2.8240 -0.9377 3.8533 15 6 4.1426 -1.1506 5.5810 16 6 3.1199 -0.6056 6.6147 17 7 2.5943 0.6699 6.0744 18 6 1.6000 1.4361 6.6218 19 1 1.3484 2.3894 6.1812 20 6 0.9154 0.9872 7.7428 21 7 1.2962 -0.1180 8.3477 22 14 -0.5462 1.9517 8.3928 23 1 -1.8007 1.3840 7.8368 24 1 -0.5776 1.8640 9.8750 25 1 -0.4225 3.3738 7.9836 26 6 4.7974 -0.2313 3.2642 27 6 4.1533 0.9071 -1.5403 28 6 4.0809 2.4272 -1.7617 29 6 4.2474 2.5775 -0.2404 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.9501 -0.8401 -0.0004 34 1 4.3734 2.6390 2.9272 35 1 3.0761 2.3419 1.7488 36 1 1.7526 1.1406 3.4123 37 1 2.2690 2.6825 4.1485 38 1 5.1591 -0.8622 5.8489 39 1 4.0594 -2.2331 5.4839 40 1 2.3054 -1.3184 6.7427 41 1 3.6146 -0.4317 7.5703 42 1 0.8182 -0.4314 9.1313 43 1 5.6618 0.2348 3.7370 44 1 5.0827 -1.1833 2.8163 45 1 5.1674 0.5088 -1.5739 46 1 3.4550 0.3421 -2.1577 47 1 3.1141 2.7691 -2.1311 48 1 4.9187 2.8255 -2.3341 49 1 3.6250 3.3611 0.1917 50 1 5.2868 2.6362 0.0828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482664931.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:14 Heat of formation + Delta-G solvation = -33.604271 kcal Electronic energy + Delta-G solvation = -31587.577784 eV Core-core repulsion = 27615.499954 eV Total energy + Delta-G solvation = -3972.077830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.63016 -40.82011 -39.66159 -38.11142 -36.89079 -35.71633 -34.56195 -33.08932 -31.55758 -30.08970 -29.17643 -27.12957 -26.77992 -26.45794 -24.86370 -23.81351 -22.66865 -21.93414 -21.59884 -20.70930 -20.29416 -19.05556 -18.23435 -17.42152 -17.33250 -17.00424 -16.94186 -16.28447 -16.13818 -16.01444 -15.82604 -15.53077 -15.30139 -14.80558 -14.68477 -14.30933 -14.10568 -14.03946 -13.76385 -13.47517 -13.39281 -13.22588 -13.16005 -13.07861 -12.95875 -12.73159 -12.53849 -12.45002 -12.14442 -12.02277 -11.97853 -11.79344 -11.65914 -11.55767 -11.41460 -11.07669 -11.01959 -10.70898 -10.67060 -10.25225 -9.78427 -8.88797 -7.86286 -5.19490 1.21514 1.43470 1.44250 1.45136 1.53865 1.83755 2.08645 2.48489 3.25225 3.30895 3.33014 3.43934 3.50313 3.59010 3.76398 3.78902 3.83438 3.98721 4.13634 4.17209 4.29682 4.35856 4.41880 4.46205 4.55564 4.62717 4.66542 4.66688 4.74263 4.77572 4.80437 4.84974 4.87303 4.95477 4.98248 5.00714 5.04967 5.06449 5.15224 5.28481 5.35912 5.40757 5.49305 5.50930 5.64939 5.76057 6.19497 6.22818 6.30478 6.93862 7.01409 7.08338 7.77967 8.46283 9.25594 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003840 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.104147 B = 7289.229075 C = 8115.184624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.724 5.724 3 C 0.544 3.456 4 O -0.553 6.553 5 C -0.143 4.143 6 C 0.533 3.467 7 O -0.556 6.556 8 N -0.600 5.600 9 C 0.109 3.891 10 C -0.116 4.116 11 C 0.159 3.841 12 H 0.023 0.977 13 C -0.107 4.107 14 H 0.062 0.938 15 C -0.119 4.119 16 C 0.180 3.820 17 N -0.615 5.615 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.064 4.064 21 N -0.950 5.950 22 Si 0.970 3.030 23 H -0.290 1.290 24 H -0.295 1.295 25 H -0.268 1.268 26 C 0.134 3.866 27 C -0.095 4.095 28 C -0.129 4.129 29 C -0.113 4.113 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.044 0.956 33 H 0.410 0.590 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.019 0.981 41 H 0.003 0.997 42 H 0.246 0.754 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.775 1.036 -21.525 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.374 5.374 3 C 0.329 3.671 4 O -0.431 6.431 5 C -0.149 4.149 6 C 0.321 3.679 7 O -0.435 6.435 8 N -0.331 5.331 9 C -0.014 4.014 10 C -0.156 4.156 11 C 0.052 3.948 12 H 0.041 0.959 13 C -0.127 4.127 14 H 0.080 0.920 15 C -0.158 4.158 16 C 0.056 3.944 17 N -0.340 5.340 18 C -0.361 4.361 19 H 0.099 0.901 20 C -0.257 4.257 21 N -0.599 5.599 22 Si 0.799 3.201 23 H -0.217 1.217 24 H -0.222 1.222 25 H -0.193 1.193 26 C 0.013 3.987 27 C -0.132 4.132 28 C -0.167 4.167 29 C -0.150 4.150 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.245 0.755 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.037 0.963 41 H 0.021 0.979 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.118 0.882 49 H 0.102 0.898 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.483 1.276 -21.438 22.433 hybrid contribution -1.112 -0.148 1.353 1.757 sum 5.372 1.127 -20.085 20.822 Atomic orbital electron populations 1.21701 0.78103 1.04232 1.01808 1.45795 1.08779 1.08547 1.74298 1.19646 0.88155 0.83941 0.75350 1.90712 1.69984 1.32200 1.50191 1.22458 0.92561 1.01359 0.98537 1.20225 0.80066 0.84813 0.82804 1.90674 1.44269 1.27560 1.81014 1.48313 1.57302 1.21587 1.05896 1.22038 0.96088 0.84698 0.98531 1.21749 0.97826 1.00684 0.95302 1.20872 0.93497 0.94386 0.86084 0.95925 1.22459 0.98217 0.97061 0.94965 0.91984 1.22574 0.99111 1.00093 0.94012 1.21328 0.93300 0.86719 0.93087 1.44467 1.41307 1.24098 1.24081 1.19344 1.08572 0.99918 1.08234 0.90092 1.25574 1.02178 0.98949 0.99022 1.70158 1.42443 1.25120 1.22203 0.85179 0.79655 0.78441 0.76861 1.21694 1.22178 1.19261 1.21567 0.94964 0.94889 0.87311 1.22824 1.02935 0.98141 0.89349 1.22819 1.03531 0.94952 0.95362 1.23021 1.01682 0.91863 0.98469 0.91478 0.87706 0.93753 0.75507 0.89515 0.88304 0.93752 0.91503 0.90123 0.90122 0.96263 0.97855 0.94510 0.89495 0.88541 0.87687 0.89961 0.90158 0.88204 0.89754 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.58 10.71 127.77 1.37 2.95 16 2 N -0.72 -15.32 5.65 -484.52 -2.74 -18.06 16 3 C 0.54 13.30 5.38 87.66 0.47 13.77 16 4 O -0.55 -16.54 14.96 -3.04 -0.05 -16.59 16 5 C -0.14 -3.01 0.58 -53.15 -0.03 -3.04 16 6 C 0.53 13.47 6.35 87.66 0.56 14.02 16 7 O -0.56 -16.15 15.55 -3.01 -0.05 -16.20 16 8 N -0.60 -15.80 3.00 -817.62 -2.45 -18.25 16 9 C 0.11 2.95 5.47 86.75 0.47 3.42 16 10 C -0.12 -4.10 5.51 30.50 0.17 -3.93 16 11 C 0.16 6.26 2.57 45.55 0.12 6.37 16 12 H 0.02 0.91 7.92 -2.38 -0.02 0.89 16 13 C -0.11 -3.60 2.86 -9.95 -0.03 -3.63 16 14 H 0.06 2.31 8.13 -2.38 -0.02 2.30 16 15 C -0.12 -4.22 6.53 31.63 0.21 -4.01 16 16 C 0.18 8.86 5.47 86.85 0.48 9.33 16 17 N -0.62 -31.17 3.35 -669.72 -2.24 -33.42 16 18 C -0.23 -12.89 9.85 84.03 0.83 -12.07 16 19 H 0.08 4.34 7.28 -2.91 -0.02 4.32 16 20 C -0.06 -3.67 5.48 84.86 0.47 -3.21 16 21 N -0.95 -57.42 10.47 21.65 0.23 -57.19 16 22 Si 0.97 46.15 29.56 68.60 2.03 48.18 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 26 C 0.13 3.65 5.94 85.90 0.51 4.16 16 27 C -0.09 -1.55 6.89 31.12 0.21 -1.34 16 28 C -0.13 -1.88 7.80 31.12 0.24 -1.64 16 29 C -0.11 -2.01 5.60 31.12 0.17 -1.83 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.41 7.73 8.59 -92.71 -0.80 6.93 16 34 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.10 2.61 2.99 -2.39 -0.01 2.61 16 36 H 0.04 1.72 8.12 -2.39 -0.02 1.70 16 37 H 0.07 2.46 7.64 -2.39 -0.02 2.44 16 38 H 0.08 2.53 8.12 -2.39 -0.02 2.51 16 39 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.02 1.07 7.11 -2.39 -0.02 1.05 16 41 H 0.00 0.18 7.86 -2.39 -0.02 0.16 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 44 H 0.10 2.57 7.03 -2.38 -0.02 2.56 16 45 H 0.10 1.72 7.73 -2.39 -0.02 1.70 16 46 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 47 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 48 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.08 1.69 6.55 -2.38 -0.02 1.67 16 50 H 0.11 1.63 8.09 -2.38 -0.02 1.61 16 Total: -1.00 -71.20 381.49 1.09 -70.11 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.15 Total: 22.09 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 6.21 Total: 19.32 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -7.21 Total: -126.92 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.09 Total: -32.79 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -71.20 1.09 -70.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482664931.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.508 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds