Wall clock time and date at job start Tue Mar 31 2020 18:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00253 * 2 1 4 4 O 1.21284 * 120.00055 * 5.26142 * 3 2 1 5 5 C 1.50705 * 119.99900 * 185.26634 * 3 2 1 6 6 C 1.50696 * 112.84761 * 306.09383 * 5 3 2 7 7 O 1.21282 * 120.00325 * 117.40374 * 6 5 3 8 8 N 1.34775 * 120.00364 * 297.39971 * 6 5 3 9 9 C 1.46530 * 120.97453 * 353.55825 * 8 6 5 10 10 C 1.51789 * 110.13939 * 233.74223 * 9 8 6 11 11 C 1.49165 * 114.91550 * 318.34320 * 10 9 8 12 12 H 1.08991 * 104.77655 * 156.85614 * 11 10 9 13 13 C 1.52644 * 117.20286 * 40.29659 * 11 10 9 14 14 H 1.08996 * 112.62101 * 82.31551 * 13 11 10 15 15 C 1.56118 * 101.80387 * 202.64634 * 13 11 10 16 16 C 1.55102 * 101.07917 * 37.66006 * 15 13 11 17 17 N 1.46254 * 114.38849 * 271.88144 * 11 10 9 18 18 C 1.36946 * 125.95913 * 316.04124 * 17 11 10 19 19 H 1.07995 * 119.99556 * 347.55311 * 18 17 11 20 20 C 1.38805 * 119.99832 * 167.54883 * 18 17 11 21 21 N 1.31621 * 120.00467 * 2.38534 * 20 18 17 22 22 Si 1.86806 * 119.99837 * 182.38525 * 20 18 17 23 23 H 1.48500 * 109.47140 * 94.99245 * 22 20 18 24 24 H 1.48501 * 109.46969 * 214.99054 * 22 20 18 25 25 H 1.48497 * 109.47127 * 334.98920 * 22 20 18 26 26 C 1.46693 * 120.98102 * 173.53121 * 8 6 5 27 27 C 1.53777 * 113.61508 * 77.28982 * 5 3 2 28 28 C 1.53960 * 87.02138 * 89.22926 * 27 5 3 29 29 C 1.53775 * 113.61204 * 174.89844 * 5 3 2 30 30 H 1.08996 * 109.47104 * 59.99939 * 1 2 3 31 31 H 1.09000 * 109.47474 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46790 * 300.00161 * 1 2 3 33 33 H 0.97004 * 119.99494 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.36093 * 353.94485 * 9 8 6 35 35 H 1.08998 * 109.36387 * 113.53592 * 9 8 6 36 36 H 1.08996 * 108.36364 * 79.84694 * 10 9 8 37 37 H 1.09000 * 108.36307 * 197.13264 * 10 9 8 38 38 H 1.09002 * 111.09651 * 279.71580 * 15 13 11 39 39 H 1.08997 * 111.10811 * 155.61506 * 15 13 11 40 40 H 1.09002 * 110.34744 * 204.08261 * 16 15 13 41 41 H 1.08996 * 110.43655 * 81.85503 * 16 15 13 42 42 H 0.96993 * 120.00314 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.52871 * 1.29907 * 26 8 6 44 44 H 1.09008 * 109.52916 * 241.09216 * 26 8 6 45 45 H 1.08996 * 113.61553 * 203.74894 * 27 5 3 46 46 H 1.09000 * 113.61526 * 334.65583 * 27 5 3 47 47 H 1.08998 * 113.53670 * 270.81340 * 28 27 5 48 48 H 1.08996 * 113.74810 * 139.94055 * 28 27 5 49 49 H 1.09003 * 113.61635 * 25.34736 * 29 5 3 50 50 H 1.09005 * 113.61458 * 156.16527 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5364 2.2153 0.0963 5 6 3.6412 1.1698 -0.1198 6 6 4.3121 0.3021 0.9136 7 8 4.9693 -0.6563 0.5665 8 7 4.1820 0.5911 2.2235 9 6 3.5129 1.8187 2.6621 10 6 4.4157 2.5997 3.5997 11 6 5.1534 1.7711 4.5968 12 1 6.0176 2.3744 4.8746 13 6 5.7225 0.4398 4.1134 14 1 6.6806 0.5528 3.6061 15 6 5.8535 -0.3558 5.4502 16 6 4.5778 0.1091 6.2000 17 7 4.4250 1.5348 5.8428 18 6 3.7195 2.4702 6.5517 19 1 3.8278 3.5191 6.3184 20 6 2.8652 2.0703 7.5700 21 7 2.7686 0.7961 7.8857 22 14 1.8526 3.3404 8.4926 23 1 0.5033 3.4376 7.8800 24 1 1.7225 2.9319 9.9144 25 1 2.5271 4.6612 8.4167 26 6 4.7056 -0.3142 3.2522 27 6 4.1454 0.9243 -1.5517 28 6 4.0756 2.4493 -1.7518 29 6 4.2479 2.5786 -0.2291 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.9499 -0.8401 -0.0004 34 1 3.2775 2.4324 1.7926 35 1 2.5894 1.5614 3.1808 36 1 5.1426 3.1471 2.9997 37 1 3.8054 3.3226 4.1410 38 1 6.7541 -0.0670 5.9920 39 1 5.8334 -1.4307 5.2709 40 1 4.7099 -0.0001 7.2764 41 1 3.7109 -0.4606 5.8654 42 1 2.1719 0.5167 8.5975 43 1 5.1918 -1.1653 2.7753 44 1 3.8863 -0.6658 3.8794 45 1 5.1583 0.5242 -1.5953 46 1 3.4427 0.3690 -2.1728 47 1 3.1077 2.7970 -2.1128 48 1 4.9109 2.8559 -2.3218 49 1 3.6278 3.3568 0.2159 50 1 5.2885 2.6319 0.0909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482664937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:22 Heat of formation + Delta-G solvation = -12.843102 kcal Electronic energy + Delta-G solvation = -31744.165084 eV Core-core repulsion = 27772.987526 eV Total energy + Delta-G solvation = -3971.177558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51664 -39.52555 -38.33826 -37.07711 -35.23718 -34.72558 -32.81800 -31.80214 -29.67544 -28.60071 -27.75635 -26.30871 -25.74526 -24.98066 -23.84441 -22.59655 -21.72525 -20.47584 -20.12524 -19.45913 -18.44448 -17.57980 -16.58593 -16.26164 -16.18711 -15.92009 -15.38653 -15.17191 -14.83488 -14.73484 -14.55175 -14.02853 -13.95787 -13.55628 -13.09992 -13.03485 -12.85498 -12.63209 -12.57211 -12.46381 -12.17742 -12.12409 -11.70849 -11.47150 -11.33357 -11.25554 -11.16362 -10.97788 -10.78742 -10.61546 -10.49533 -10.18158 -10.14351 -10.00667 -9.89164 -9.72782 -9.66414 -9.48010 -9.31076 -8.60362 -8.29281 -6.77999 -5.77416 -3.11673 2.32901 2.54499 2.98380 3.12547 3.37339 3.43513 3.44625 4.26805 4.29152 4.44227 4.46354 4.54794 4.57972 5.02503 5.13950 5.20655 5.25197 5.26763 5.33360 5.45165 5.45756 5.53103 5.55032 5.59799 5.63301 5.69516 5.70912 5.80105 5.83126 5.90485 5.97398 6.05879 6.14130 6.18163 6.19670 6.31922 6.35328 6.44318 6.57814 6.64790 6.70581 6.94000 6.98841 7.22248 7.51335 7.56820 7.60166 7.77516 7.97995 8.19150 8.25609 9.16910 9.79130 10.48619 11.34460 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013654 B = 0.004088 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.255153 B = 6847.249490 C = 7580.914245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.729 5.729 3 C 0.548 3.452 4 O -0.524 6.524 5 C -0.137 4.137 6 C 0.530 3.470 7 O -0.543 6.543 8 N -0.592 5.592 9 C 0.107 3.893 10 C -0.133 4.133 11 C 0.172 3.828 12 H 0.006 0.994 13 C -0.104 4.104 14 H 0.077 0.923 15 C -0.144 4.144 16 C 0.171 3.829 17 N -0.591 5.591 18 C -0.226 4.226 19 H 0.076 0.924 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.907 3.093 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.119 3.881 27 C -0.100 4.100 28 C -0.140 4.140 29 C -0.110 4.110 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.404 0.596 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.024 0.976 42 H 0.252 0.748 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -2.156 -17.754 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.381 5.381 3 C 0.332 3.668 4 O -0.399 6.399 5 C -0.144 4.144 6 C 0.317 3.683 7 O -0.422 6.422 8 N -0.323 5.323 9 C -0.016 4.016 10 C -0.173 4.173 11 C 0.064 3.936 12 H 0.024 0.976 13 C -0.124 4.124 14 H 0.095 0.905 15 C -0.183 4.183 16 C 0.047 3.953 17 N -0.316 5.316 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.564 5.564 22 Si 0.737 3.263 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.003 4.003 27 C -0.138 4.138 28 C -0.177 4.177 29 C -0.148 4.148 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.238 0.762 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.112 0.888 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.931 -1.881 -17.655 17.779 hybrid contribution -0.529 0.240 0.728 0.931 sum 0.403 -1.641 -16.927 17.011 Atomic orbital electron populations 1.21581 0.78987 1.02492 1.02530 1.45721 1.08041 1.08686 1.75613 1.19461 0.87711 0.83929 0.75674 1.90720 1.69399 1.31257 1.48543 1.22341 0.93345 1.00514 0.98162 1.19850 0.81024 0.84799 0.82658 1.90670 1.41309 1.29856 1.80330 1.47986 1.56336 1.23009 1.04959 1.21553 0.96034 0.85031 0.98947 1.21170 0.99295 0.99516 0.97294 1.19365 0.93854 0.92983 0.87370 0.97609 1.22268 0.97482 0.96496 0.96146 0.90502 1.23301 1.01293 0.98231 0.95515 1.21549 0.90779 0.84125 0.98897 1.44476 1.60510 1.06770 1.19870 1.18930 1.17026 0.87819 1.11673 0.90633 1.24856 0.98990 0.96111 0.99991 1.69925 1.40474 1.13502 1.32454 0.86176 0.80531 0.80526 0.79028 1.21600 1.21736 1.20558 1.21746 0.97657 0.92190 0.88709 1.22824 1.02884 0.97228 0.90874 1.22911 1.02859 0.95708 0.96262 1.22906 1.01484 0.93203 0.97163 0.92154 0.90492 0.91730 0.76183 0.89641 0.91347 0.93188 0.89736 0.91917 0.91995 0.90834 0.95826 0.93714 0.89756 0.90292 0.87870 0.90773 0.89607 0.90452 0.88840 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.71 59.85 0.64 1.47 16 2 N -0.73 -8.22 5.65 -67.07 -0.38 -8.59 16 3 C 0.55 7.34 5.34 -10.98 -0.06 7.29 16 4 O -0.52 -8.35 15.27 5.55 0.08 -8.26 16 5 C -0.14 -1.72 0.58 -156.00 -0.09 -1.81 16 6 C 0.53 7.95 6.36 -10.99 -0.07 7.88 16 7 O -0.54 -9.16 15.53 5.56 0.09 -9.07 16 8 N -0.59 -9.49 2.94 -174.17 -0.51 -10.01 16 9 C 0.11 1.79 5.65 -4.64 -0.03 1.76 16 10 C -0.13 -2.39 5.60 -29.23 -0.16 -2.55 16 11 C 0.17 3.45 2.61 -70.13 -0.18 3.27 16 12 H 0.01 0.13 8.05 -51.93 -0.42 -0.28 16 13 C -0.10 -1.82 3.70 -89.08 -0.33 -2.15 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 15 C -0.14 -2.63 6.47 -23.95 -0.15 -2.79 16 16 C 0.17 3.97 4.99 -2.24 -0.01 3.96 16 17 N -0.59 -14.31 3.32 -165.91 -0.55 -14.86 16 18 C -0.23 -6.02 9.36 -15.06 -0.14 -6.16 16 19 H 0.08 1.97 7.41 -52.49 -0.39 1.58 16 20 C 0.00 -0.07 5.49 -17.43 -0.10 -0.17 16 21 N -0.92 -26.08 10.51 55.49 0.58 -25.50 16 22 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.12 2.01 5.54 -3.88 -0.02 1.98 16 27 C -0.10 -1.04 6.92 -25.83 -0.18 -1.21 16 28 C -0.14 -1.34 7.80 -25.82 -0.20 -1.54 16 29 C -0.11 -1.26 5.68 -25.92 -0.15 -1.41 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 33 H 0.40 4.11 8.56 -40.82 -0.35 3.76 16 34 H 0.09 1.32 3.32 -51.93 -0.17 1.15 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.66 6.84 -51.93 -0.36 1.31 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.00 7.98 -51.93 -0.41 0.58 16 40 H 0.07 1.92 6.86 -51.93 -0.36 1.57 16 41 H 0.02 0.59 7.03 -51.93 -0.37 0.23 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.08 1.38 7.01 -51.93 -0.36 1.01 16 44 H 0.08 1.47 6.49 -51.92 -0.34 1.13 16 45 H 0.10 1.10 7.65 -51.93 -0.40 0.70 16 46 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.09 1.16 6.39 -51.93 -0.33 0.83 16 50 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -31.13 378.28 -9.27 -40.40 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.03 Total: 5.74 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -1.23 Total: 7.81 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.86 Total: -58.95 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.17 Total: -17.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.13 -9.27 -40.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482664937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.560 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds