Wall clock time and date at job start Tue Mar 31 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 O 1.21276 * 120.00368 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99391 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00221 * 359.97438 * 6 4 3 8 8 C 1.46506 * 119.99629 * 180.02562 * 6 4 3 9 9 C 1.52998 * 109.47008 * 89.99792 * 8 6 4 10 10 H 1.09003 * 109.47022 * 60.00137 * 9 8 6 11 11 O 1.42894 * 109.47324 * 299.99950 * 9 8 6 12 12 C 1.52999 * 109.47020 * 179.97438 * 9 8 6 13 13 N 1.46501 * 109.47450 * 184.99979 * 12 9 8 14 14 C 1.36930 * 120.00215 * 180.02562 * 13 12 9 15 15 H 1.08004 * 120.00330 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00312 * 180.02562 * 14 13 12 17 17 N 1.31625 * 119.99531 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00386 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47185 * 59.99721 * 18 16 14 20 20 H 1.48505 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46837 * 299.99543 * 18 16 14 22 22 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 23 23 C 1.50696 * 109.47351 * 293.95574 * 22 2 1 24 24 C 1.38238 * 120.00290 * 269.73171 * 23 22 2 25 25 C 1.38236 * 120.00520 * 179.76650 * 24 23 22 26 26 C 1.38238 * 119.99353 * 0.50323 * 25 24 23 27 27 C 1.38236 * 120.00267 * 359.74384 * 26 25 24 28 28 C 1.38231 * 119.99929 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 33 33 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 34 34 H 1.08996 * 109.47061 * 90.00602 * 7 6 4 35 35 H 1.09002 * 109.46928 * 210.00030 * 7 6 4 36 36 H 1.09000 * 109.47067 * 330.00213 * 7 6 4 37 37 H 1.09003 * 109.46915 * 209.99970 * 8 6 4 38 38 H 1.09004 * 109.46767 * 329.99572 * 8 6 4 39 39 H 0.96704 * 114.00101 * 299.99854 * 11 9 8 40 40 H 1.09000 * 109.47514 * 305.00385 * 12 9 8 41 41 H 1.09003 * 109.46924 * 65.00177 * 12 9 8 42 42 H 0.96995 * 119.99406 * 0.02562 * 13 12 9 43 43 H 0.97007 * 119.99517 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.46995 * 53.95554 * 22 2 1 45 45 H 1.09001 * 109.46848 * 173.95560 * 22 2 1 46 46 H 1.08006 * 119.99743 * 359.97438 * 24 23 22 47 47 H 1.07995 * 120.00356 * 180.22999 * 25 24 23 48 48 H 1.07998 * 119.99864 * 179.72869 * 26 25 24 49 49 H 1.08000 * 119.99990 * 179.97438 * 27 26 25 50 50 H 1.08003 * 119.99738 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0047 1.4455 2.1407 6 7 2.0182 3.3200 1.5234 7 6 2.7815 4.0468 0.5058 8 6 1.6701 3.9767 2.7860 9 6 2.7802 3.7333 3.8103 10 1 3.7178 4.1427 3.4342 11 8 2.9273 2.3288 4.0287 12 6 2.4170 4.4196 5.1286 13 7 3.5313 4.2884 6.0707 14 6 3.4343 4.8284 7.3253 15 1 2.5363 5.3507 7.6206 16 6 4.4903 4.7045 8.2178 17 7 5.5849 4.0684 7.8578 18 14 4.3578 5.4405 9.9296 19 1 3.2099 4.8272 10.6446 20 1 5.6097 5.1722 10.6820 21 1 4.1483 6.9069 9.8230 22 6 1.9954 -0.7660 -1.1377 23 6 1.6369 -2.2204 -0.9730 24 6 2.4964 -3.0730 -0.3056 25 6 2.1653 -4.4061 -0.1504 26 6 0.9794 -4.8889 -0.6716 27 6 0.1223 -4.0374 -1.3434 28 6 0.4512 -2.7034 -1.4945 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 3.0798 1.3443 -0.1082 33 1 1.5612 1.9273 -0.8309 34 1 2.0940 4.5634 -0.1640 35 1 3.4321 4.7747 0.9906 36 1 3.3862 3.3431 -0.0662 37 1 1.5579 5.0481 2.6194 38 1 0.7325 3.5673 3.1620 39 1 2.1296 1.8973 4.3644 40 1 2.2182 5.4756 4.9459 41 1 1.5280 3.9501 5.5498 42 1 4.3376 3.8190 5.8057 43 1 6.3227 3.9816 8.4816 44 1 1.5611 -0.3872 -2.0628 45 1 3.0797 -0.6611 -1.1757 46 1 3.4251 -2.6968 0.0974 47 1 2.8350 -5.0713 0.3742 48 1 0.7227 -5.9313 -0.5541 49 1 -0.8040 -4.4148 -1.7509 50 1 -0.2183 -2.0383 -2.0197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486318803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:11 Heat of formation + Delta-G solvation = -27.450195 kcal Electronic energy + Delta-G solvation = -28739.019444 eV Core-core repulsion = 24767.208475 eV Total energy + Delta-G solvation = -3971.810969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.24281 -39.51398 -37.58070 -36.53814 -35.19466 -33.92976 -32.05046 -31.26986 -31.13126 -29.81472 -28.10595 -27.26773 -26.88827 -25.11710 -23.34676 -22.73058 -22.32033 -21.11938 -21.00704 -19.20853 -17.40598 -17.10678 -16.90263 -16.53011 -16.22985 -15.72985 -15.62616 -15.37845 -15.10217 -14.66932 -14.59693 -14.34570 -14.05790 -13.68337 -13.59686 -13.23020 -13.10815 -12.99246 -12.89562 -12.71551 -12.56442 -12.37854 -12.19080 -12.04142 -11.81582 -11.69705 -11.44066 -11.23452 -11.18173 -10.89738 -10.76650 -10.57227 -10.15083 -9.80194 -9.70626 -9.48001 -9.11323 -9.03798 -8.84647 -8.51935 -8.41596 -6.87126 -5.70313 -2.99540 1.09420 1.20216 2.68683 2.87690 3.47162 3.47413 3.51234 3.52756 3.93479 4.41952 4.49021 4.58916 4.61852 4.78619 4.85994 4.87997 4.92817 4.94359 4.99842 5.05865 5.10911 5.16847 5.26695 5.28033 5.33244 5.40234 5.44784 5.47207 5.51946 5.58866 5.72151 5.76597 5.80298 5.82705 5.98536 6.06397 6.22317 6.29231 6.30383 6.38912 6.47667 6.57870 6.67507 6.77478 6.79907 6.81518 7.38867 7.72434 8.25179 8.31459 8.48176 9.59063 10.17678 10.53383 11.52077 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016045 B = 0.002081 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.688113 B =13453.265324 C =14532.209321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.516 5.516 3 C 0.039 3.961 4 C 0.521 3.479 5 O -0.515 6.515 6 N -0.612 5.612 7 C 0.077 3.923 8 C 0.086 3.914 9 C 0.087 3.913 10 H 0.094 0.906 11 O -0.547 6.547 12 C 0.126 3.874 13 N -0.725 5.725 14 C -0.242 4.242 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.094 3.906 23 C -0.076 4.076 24 C -0.095 4.095 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.113 4.113 29 H 0.071 0.929 30 H 0.017 0.983 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.374 0.626 40 H 0.023 0.977 41 H 0.021 0.979 42 H 0.388 0.612 43 H 0.255 0.745 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -10.204 -26.773 30.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.240 5.240 3 C -0.091 4.091 4 C 0.308 3.692 5 O -0.389 6.389 6 N -0.347 5.347 7 C -0.066 4.066 8 C -0.037 4.037 9 C 0.026 3.974 10 H 0.112 0.888 11 O -0.352 6.352 12 C -0.003 4.003 13 N -0.370 5.370 14 C -0.373 4.373 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.579 5.579 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.033 4.033 23 C -0.076 4.076 24 C -0.114 4.114 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.132 4.132 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.222 0.778 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.222 0.778 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.471 -10.538 -25.961 29.576 hybrid contribution -0.509 0.724 0.344 0.950 sum -9.980 -9.814 -25.617 29.192 Atomic orbital electron populations 1.22624 0.86414 1.03137 1.00843 1.61609 1.08974 1.11358 1.42081 1.22001 1.01950 0.89796 0.95397 1.20271 0.79369 0.80904 0.88656 1.90641 1.39176 1.62853 1.46274 1.47708 1.56023 1.13176 1.17786 1.21801 0.95843 0.97465 0.91499 1.22234 0.99753 0.97644 0.84074 1.22460 0.98115 0.83039 0.93800 0.88831 1.86544 1.41052 1.19645 1.87917 1.21244 0.92540 0.97044 0.89464 1.42239 1.15758 1.67299 1.11668 1.19179 1.00101 1.28265 0.89787 0.91345 1.24765 0.96469 1.01231 0.98544 1.69680 1.05732 1.46886 1.35581 0.86254 0.76695 0.78706 0.84423 1.21276 1.21677 1.21316 1.21087 1.00575 0.90154 0.91531 1.19660 0.94896 0.94736 0.98358 1.21073 0.99720 0.93211 0.97347 1.21184 0.97136 0.95756 0.99795 1.21157 0.94714 0.99709 0.98369 1.21093 0.99607 0.93701 0.99771 1.21035 0.96297 0.95626 1.00239 0.91015 0.96456 0.89322 0.87869 0.92284 0.92749 0.90618 0.91241 0.89808 0.89565 0.77812 0.95898 0.96163 0.77757 0.93480 0.93937 0.89738 0.85811 0.86017 0.86267 0.86258 0.86494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.78 60.07 0.53 0.71 16 2 N -0.52 -5.61 4.49 -245.82 -1.10 -6.71 16 3 C 0.04 0.38 4.00 -4.97 -0.02 0.36 16 4 C 0.52 6.79 6.87 -10.98 -0.08 6.72 16 5 O -0.51 -8.51 12.70 -3.09 -0.04 -8.55 16 6 N -0.61 -7.14 2.83 -181.56 -0.51 -7.65 16 7 C 0.08 0.60 10.24 59.85 0.61 1.22 16 8 C 0.09 1.13 5.15 -4.04 -0.02 1.11 16 9 C 0.09 1.48 3.27 -26.73 -0.09 1.39 16 10 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 11 O -0.55 -10.66 12.09 -43.88 -0.53 -11.19 16 12 C 0.13 2.58 5.90 -4.04 -0.02 2.56 16 13 N -0.73 -19.24 5.55 -59.91 -0.33 -19.57 16 14 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 15 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -29.19 13.06 55.49 0.72 -28.47 16 18 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 22 C 0.09 0.80 5.12 -4.97 -0.03 0.78 16 23 C -0.08 -0.72 4.88 -104.62 -0.51 -1.23 16 24 C -0.09 -0.92 9.70 -39.58 -0.38 -1.31 16 25 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 27 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 28 C -0.11 -0.98 7.97 -39.58 -0.32 -1.29 16 29 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 30 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 1.15 5.82 -51.93 -0.30 0.85 16 32 H 0.10 0.88 7.19 -51.93 -0.37 0.50 16 33 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 36 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 37 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 38 H 0.09 1.21 7.42 -51.93 -0.39 0.82 16 39 H 0.37 7.01 8.45 45.56 0.39 7.39 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.39 11.10 7.67 -40.82 -0.31 10.78 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.04 0.31 8.06 -51.93 -0.42 -0.11 16 45 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 46 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 50 H 0.12 0.84 8.03 -52.48 -0.42 0.41 16 LS Contribution 405.56 15.07 6.11 6.11 Total: -1.00 -35.72 405.56 -9.97 -45.69 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -7.50 Total: 13.34 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.76 Total: -0.96 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -1.23 Total: -62.40 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.57 Total: -19.74 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.72 -9.97 -45.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486318803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.244 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds