Wall clock time and date at job start Tue Mar 31 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 O 1.21276 * 120.00368 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99391 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00221 * 359.97438 * 6 4 3 8 8 C 1.46506 * 119.99629 * 180.02562 * 6 4 3 9 9 C 1.52998 * 109.47008 * 89.99792 * 8 6 4 10 10 H 1.09003 * 109.47022 * 60.00137 * 9 8 6 11 11 O 1.42894 * 109.47324 * 299.99950 * 9 8 6 12 12 C 1.52999 * 109.47020 * 179.97438 * 9 8 6 13 13 N 1.46501 * 109.47450 * 184.99979 * 12 9 8 14 14 C 1.36930 * 120.00215 * 180.02562 * 13 12 9 15 15 H 1.08004 * 120.00330 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00312 * 180.02562 * 14 13 12 17 17 N 1.31625 * 119.99531 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00386 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47185 * 59.99721 * 18 16 14 20 20 H 1.48505 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46837 * 299.99543 * 18 16 14 22 22 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 23 23 C 1.50696 * 109.47351 * 293.95574 * 22 2 1 24 24 C 1.38238 * 120.00290 * 269.73171 * 23 22 2 25 25 C 1.38236 * 120.00520 * 179.76650 * 24 23 22 26 26 C 1.38238 * 119.99353 * 0.50323 * 25 24 23 27 27 C 1.38236 * 120.00267 * 359.74384 * 26 25 24 28 28 C 1.38231 * 119.99929 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 33 33 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 34 34 H 1.08996 * 109.47061 * 90.00602 * 7 6 4 35 35 H 1.09002 * 109.46928 * 210.00030 * 7 6 4 36 36 H 1.09000 * 109.47067 * 330.00213 * 7 6 4 37 37 H 1.09003 * 109.46915 * 209.99970 * 8 6 4 38 38 H 1.09004 * 109.46767 * 329.99572 * 8 6 4 39 39 H 0.96704 * 114.00101 * 299.99854 * 11 9 8 40 40 H 1.09000 * 109.47514 * 305.00385 * 12 9 8 41 41 H 1.09003 * 109.46924 * 65.00177 * 12 9 8 42 42 H 0.96995 * 119.99406 * 0.02562 * 13 12 9 43 43 H 0.97007 * 119.99517 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.46995 * 53.95554 * 22 2 1 45 45 H 1.09001 * 109.46848 * 173.95560 * 22 2 1 46 46 H 1.08006 * 119.99743 * 359.97438 * 24 23 22 47 47 H 1.07995 * 120.00356 * 180.22999 * 25 24 23 48 48 H 1.07998 * 119.99864 * 179.72869 * 26 25 24 49 49 H 1.08000 * 119.99990 * 179.97438 * 27 26 25 50 50 H 1.08003 * 119.99738 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0047 1.4455 2.1407 6 7 2.0182 3.3200 1.5234 7 6 2.7815 4.0468 0.5058 8 6 1.6701 3.9767 2.7860 9 6 2.7802 3.7333 3.8103 10 1 3.7178 4.1427 3.4342 11 8 2.9273 2.3288 4.0287 12 6 2.4170 4.4196 5.1286 13 7 3.5313 4.2884 6.0707 14 6 3.4343 4.8284 7.3253 15 1 2.5363 5.3507 7.6206 16 6 4.4903 4.7045 8.2178 17 7 5.5849 4.0684 7.8578 18 14 4.3578 5.4405 9.9296 19 1 3.2099 4.8272 10.6446 20 1 5.6097 5.1722 10.6820 21 1 4.1483 6.9069 9.8230 22 6 1.9954 -0.7660 -1.1377 23 6 1.6369 -2.2204 -0.9730 24 6 2.4964 -3.0730 -0.3056 25 6 2.1653 -4.4061 -0.1504 26 6 0.9794 -4.8889 -0.6716 27 6 0.1223 -4.0374 -1.3434 28 6 0.4512 -2.7034 -1.4945 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 3.0798 1.3443 -0.1082 33 1 1.5612 1.9273 -0.8309 34 1 2.0940 4.5634 -0.1640 35 1 3.4321 4.7747 0.9906 36 1 3.3862 3.3431 -0.0662 37 1 1.5579 5.0481 2.6194 38 1 0.7325 3.5673 3.1620 39 1 2.1296 1.8973 4.3644 40 1 2.2182 5.4756 4.9459 41 1 1.5280 3.9501 5.5498 42 1 4.3376 3.8190 5.8057 43 1 6.3227 3.9816 8.4816 44 1 1.5611 -0.3872 -2.0628 45 1 3.0797 -0.6611 -1.1757 46 1 3.4251 -2.6968 0.0974 47 1 2.8350 -5.0713 0.3742 48 1 0.7227 -5.9313 -0.5541 49 1 -0.8040 -4.4148 -1.7509 50 1 -0.2183 -2.0383 -2.0197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486318803.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:10 Heat of formation + Delta-G solvation = -53.528283 kcal Electronic energy + Delta-G solvation = -28740.150275 eV Core-core repulsion = 24767.208475 eV Total energy + Delta-G solvation = -3972.941800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15624 -40.22691 -38.81980 -37.49865 -36.30088 -35.83673 -33.22880 -32.71416 -31.77336 -31.16888 -29.10754 -28.04514 -27.84887 -26.52147 -24.72524 -23.61706 -23.33922 -22.57579 -21.71537 -20.13759 -19.23706 -18.29062 -17.79412 -17.50131 -17.11150 -16.74183 -16.63601 -16.38203 -16.30776 -15.98571 -15.78808 -15.45637 -15.15834 -14.95582 -14.72199 -14.26489 -14.21435 -13.92846 -13.83802 -13.66028 -13.65545 -13.37672 -13.21426 -12.97519 -12.86898 -12.74658 -12.66490 -12.51392 -12.50600 -12.20877 -12.01083 -11.88024 -11.81181 -11.80036 -11.12305 -10.96935 -10.62139 -9.76791 -9.69466 -9.48434 -9.19293 -9.02544 -7.95360 -5.25592 0.44426 0.54770 1.45448 1.49882 1.55940 1.74201 2.01689 2.55077 2.78704 3.23538 3.35684 3.51000 3.66283 3.80536 3.83782 3.98047 4.08321 4.18875 4.19805 4.25723 4.28529 4.32063 4.35706 4.41133 4.48155 4.51157 4.54854 4.60063 4.66059 4.70347 4.75337 4.82387 4.82777 4.91267 4.97187 5.13239 5.15528 5.19826 5.24719 5.45019 5.54937 5.58950 5.66232 5.72615 5.94805 6.06972 6.17007 6.25145 6.51114 6.80564 7.31296 7.34619 8.07539 8.30688 9.27891 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016045 B = 0.002081 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.688113 B =13453.265324 C =14532.209321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.046 3.954 4 C 0.510 3.490 5 O -0.559 6.559 6 N -0.613 5.613 7 C 0.070 3.930 8 C 0.098 3.902 9 C 0.096 3.904 10 H 0.089 0.911 11 O -0.565 6.565 12 C 0.124 3.876 13 N -0.741 5.741 14 C -0.250 4.250 15 H 0.077 0.923 16 C -0.079 4.079 17 N -0.970 5.970 18 Si 0.979 3.021 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.273 1.273 22 C 0.098 3.902 23 C -0.089 4.089 24 C -0.116 4.116 25 C -0.134 4.134 26 C -0.130 4.130 27 C -0.130 4.130 28 C -0.120 4.120 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.374 0.626 40 H 0.041 0.959 41 H 0.019 0.981 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.132 0.868 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.817 -9.262 -28.558 31.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.266 5.266 3 C -0.085 4.085 4 C 0.299 3.701 5 O -0.437 6.437 6 N -0.346 5.346 7 C -0.072 4.072 8 C -0.026 4.026 9 C 0.036 3.964 10 H 0.107 0.893 11 O -0.371 6.371 12 C -0.004 4.004 13 N -0.384 5.384 14 C -0.381 4.381 15 H 0.095 0.905 16 C -0.271 4.271 17 N -0.621 5.621 18 Si 0.807 3.193 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.199 1.199 22 C -0.029 4.029 23 C -0.089 4.089 24 C -0.135 4.135 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.148 4.148 28 C -0.138 4.138 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.222 0.778 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.139 0.861 47 H 0.150 0.850 48 H 0.156 0.844 49 H 0.158 0.842 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.479 -9.560 -27.799 31.209 hybrid contribution -0.247 0.412 0.840 0.967 sum -10.726 -9.149 -26.960 30.423 Atomic orbital electron populations 1.22451 0.86713 1.02368 1.00599 1.61522 1.08992 1.12336 1.43742 1.22015 1.02836 0.89366 0.94253 1.20984 0.78632 0.81073 0.89429 1.90625 1.41180 1.63973 1.47914 1.47821 1.55942 1.13140 1.17690 1.22092 0.96341 0.97792 0.91002 1.21981 0.97317 0.99347 0.83966 1.22413 0.99401 0.81439 0.93153 0.89299 1.86516 1.41488 1.21019 1.88056 1.21452 0.90567 0.98320 0.90042 1.42463 1.16750 1.67028 1.12130 1.19640 1.00168 1.27495 0.90842 0.90476 1.25676 0.96313 1.02367 1.02793 1.69857 1.06532 1.48840 1.36842 0.85136 0.76442 0.78390 0.79311 1.20502 1.22110 1.19907 1.21101 1.01049 0.89322 0.91408 1.19859 0.95246 0.95295 0.98530 1.21230 1.00112 0.93908 0.98208 1.21420 0.97855 0.95823 1.00145 1.21454 0.94456 1.00816 0.98066 1.21421 1.00313 0.93671 0.99403 1.21265 0.96227 0.96166 1.00171 0.91681 0.94429 0.92010 0.86473 0.89300 0.90172 0.90548 0.89519 0.86934 0.90658 0.77797 0.94113 0.96333 0.79477 0.94000 0.92089 0.89006 0.86131 0.85037 0.84445 0.84236 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 8.78 127.69 1.12 1.67 16 2 N -0.54 -11.12 4.49 -931.64 -4.18 -15.31 16 3 C 0.05 0.79 4.00 85.56 0.34 1.13 16 4 C 0.51 12.79 6.87 87.66 0.60 13.40 16 5 O -0.56 -18.77 12.70 5.25 0.07 -18.71 16 6 N -0.61 -13.17 2.83 -846.73 -2.39 -15.56 16 7 C 0.07 0.87 10.24 127.77 1.31 2.18 16 8 C 0.10 2.44 5.15 86.38 0.44 2.89 16 9 C 0.10 3.26 3.27 30.59 0.10 3.36 16 10 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 11 O -0.57 -22.51 12.09 -140.71 -1.70 -24.21 16 12 C 0.12 5.03 5.90 86.38 0.51 5.54 16 13 N -0.74 -39.74 5.55 -343.45 -1.91 -41.64 16 14 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 15 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 16 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 17 N -0.97 -62.00 13.06 21.65 0.28 -61.71 16 18 Si 0.98 47.42 29.55 68.60 2.03 49.44 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.10 1.51 5.12 85.55 0.44 1.95 16 23 C -0.09 -1.61 4.88 -19.87 -0.10 -1.71 16 24 C -0.12 -2.28 9.70 22.27 0.22 -2.06 16 25 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 26 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 27 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 28 C -0.12 -1.92 7.97 22.27 0.18 -1.74 16 29 H 0.06 1.38 6.17 -2.39 -0.01 1.37 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 1.62 5.82 -2.38 -0.01 1.61 16 32 H 0.12 1.69 7.19 -2.39 -0.02 1.67 16 33 H 0.09 1.01 8.09 -2.39 -0.02 1.00 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.98 8.07 -2.39 -0.02 0.96 16 36 H 0.09 0.80 6.44 -2.39 -0.02 0.78 16 37 H 0.11 2.15 8.07 -2.39 -0.02 2.13 16 38 H 0.07 2.07 7.42 -2.39 -0.02 2.06 16 39 H 0.37 14.59 8.45 -74.05 -0.63 13.96 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.37 21.89 7.67 -92.71 -0.71 21.18 16 43 H 0.25 15.51 8.31 -92.70 -0.77 14.74 16 44 H 0.06 0.71 8.06 -2.39 -0.02 0.69 16 45 H 0.09 1.25 7.87 -2.39 -0.02 1.23 16 46 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 47 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 48 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 49 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 50 H 0.13 1.63 8.03 -2.91 -0.02 1.60 16 Total: -1.00 -78.68 405.56 -1.07 -79.74 By element: Atomic # 1 Polarization: 45.44 SS G_CDS: -0.40 Total: 45.04 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 7.14 Total: 2.92 kcal Atomic # 7 Polarization: -126.03 SS G_CDS: -8.20 Total: -134.23 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.64 Total: -42.92 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -78.68 -1.07 -79.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486318803.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.215 kcal (2) G-P(sol) polarization free energy of solvation -78.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds