Wall clock time and date at job start Tue Mar 31 2020 18:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 120.00409 * 2 1 4 4 H 1.08006 * 119.99974 * 166.03110 * 3 2 1 5 5 C 1.38816 * 120.00089 * 345.75366 * 3 2 1 6 6 N 1.31615 * 119.99515 * 343.32256 * 5 3 2 7 7 Si 1.86793 * 119.99973 * 163.32138 * 5 3 2 8 8 H 1.48491 * 109.47515 * 60.00158 * 7 5 3 9 9 H 1.48504 * 109.47193 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47377 * 299.99792 * 7 5 3 11 11 C 1.46508 * 119.99577 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47060 * 270.00429 * 11 2 1 13 13 H 1.08991 * 109.47554 * 59.99541 * 12 11 2 14 14 O 1.42901 * 109.46993 * 299.99741 * 12 11 2 15 15 C 1.52998 * 109.47114 * 180.02562 * 12 11 2 16 16 N 1.46491 * 109.47193 * 184.99561 * 15 12 11 17 17 C 1.46500 * 119.99870 * 90.00052 * 16 15 12 18 18 C 1.34779 * 120.00086 * 269.99972 * 16 15 12 19 19 O 1.21692 * 120.00133 * 5.49827 * 18 16 15 20 20 C 1.46687 * 119.99942 * 185.49763 * 18 16 15 21 21 C 1.38054 * 126.20291 * 186.92698 * 20 18 16 22 22 C 1.39242 * 106.97526 * 179.97438 * 21 20 18 23 23 C 1.35968 * 108.04076 * 0.03798 * 22 21 20 24 24 N 1.35114 * 108.76329 * 359.69719 * 23 22 21 25 25 H 0.96994 * 125.68309 * 180.31462 * 24 23 22 26 26 C 1.51018 * 123.85102 * 179.87843 * 23 22 21 27 27 C 1.53324 * 108.41129 * 343.31838 * 26 23 22 28 28 C 1.53098 * 109.52675 * 50.17716 * 27 26 23 29 29 C 1.50842 * 127.70326 * 180.13505 * 22 21 20 30 30 H 1.09001 * 109.47101 * 84.80356 * 1 2 3 31 31 H 1.08995 * 109.47503 * 204.81047 * 1 2 3 32 32 H 1.09001 * 109.46921 * 324.80943 * 1 2 3 33 33 H 0.97009 * 119.99722 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.46795 * 29.99781 * 11 2 1 35 35 H 1.08994 * 109.46982 * 150.00236 * 11 2 1 36 36 H 0.96700 * 114.00156 * 300.00557 * 14 12 11 37 37 H 1.08998 * 109.47065 * 304.99775 * 15 12 11 38 38 H 1.09009 * 109.47062 * 64.99535 * 15 12 11 39 39 H 1.09003 * 109.47440 * 95.36619 * 17 16 15 40 40 H 1.09005 * 109.46851 * 215.36403 * 17 16 15 41 41 H 1.08995 * 109.47300 * 335.35770 * 17 16 15 42 42 H 1.08003 * 126.50852 * 359.96874 * 21 20 18 43 43 H 1.09002 * 109.67855 * 103.04821 * 26 23 22 44 44 H 1.09003 * 109.68091 * 223.58808 * 26 23 22 45 45 H 1.08997 * 109.45605 * 170.19653 * 27 26 23 46 46 H 1.08991 * 109.45963 * 290.15994 * 27 26 23 47 47 H 1.09003 * 109.47583 * 49.59777 * 28 27 26 48 48 H 1.09004 * 109.47190 * 169.59953 * 28 27 26 49 49 H 1.08997 * 109.68123 * 283.15827 * 29 22 21 50 50 H 1.08992 * 109.67941 * 43.71680 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2058 1.1996 0.2258 5 6 1.4878 2.3696 -0.2958 6 7 0.3126 2.3361 -0.8875 7 14 2.2649 4.0097 0.1458 8 1 3.5687 4.1438 -0.5522 9 1 1.3633 5.1133 -0.2723 10 1 2.4802 4.0763 1.6136 11 6 2.1974 -1.2689 0.0006 12 6 2.4523 -1.7099 1.4433 13 1 1.5000 -1.8399 1.9572 14 8 3.2247 -0.7138 2.1165 15 6 3.2178 -3.0347 1.4439 16 7 3.3577 -3.5172 2.8200 17 6 2.3333 -4.3908 3.3975 18 6 4.4288 -3.1574 3.5546 19 8 5.2279 -2.3533 3.1121 20 6 4.6314 -3.7350 4.8877 21 6 5.5997 -3.3635 5.7988 22 6 5.4286 -4.1659 6.9238 23 6 4.3808 -5.0005 6.6904 24 7 3.8859 -4.7430 5.4599 25 1 3.1328 -5.1939 5.0472 26 6 3.8870 -6.0280 7.6808 27 6 4.9772 -6.2460 8.7367 28 6 5.4398 -4.8921 9.2816 29 6 6.2335 -4.1499 8.1994 30 1 -0.3633 0.0931 -1.0235 31 1 -0.3634 -0.9327 0.4312 32 1 -0.3633 0.8399 0.5923 33 1 -0.1499 3.1634 -1.0946 34 1 1.6082 -2.0287 -0.5129 35 1 3.1498 -1.1388 -0.5133 36 1 4.0872 -0.5455 1.7129 37 1 2.6708 -3.7706 0.8546 38 1 4.2061 -2.8835 1.0096 39 1 2.6370 -5.4315 3.2838 40 1 2.2144 -4.1607 4.4564 41 1 1.3863 -4.2303 2.8824 42 1 6.3478 -2.5962 5.6644 43 1 2.9776 -5.6672 8.1614 44 1 3.6827 -6.9664 7.1652 45 1 4.5774 -6.8484 9.5523 46 1 5.8229 -6.7634 8.2839 47 1 4.5709 -4.2987 9.5661 48 1 6.0741 -5.0491 10.1541 49 1 7.1885 -4.6497 8.0372 50 1 6.4059 -3.1200 8.5117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486354318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:40 Heat of formation + Delta-G solvation = -27.554575 kcal Electronic energy + Delta-G solvation = -29579.752204 eV Core-core repulsion = 25607.936709 eV Total energy + Delta-G solvation = -3971.815496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.73600 -40.60553 -38.72004 -37.24919 -36.84225 -36.08610 -33.32792 -33.14560 -31.52517 -30.11135 -29.66496 -28.25629 -27.92487 -27.01095 -24.95029 -23.67602 -22.79927 -22.16996 -21.93107 -20.87370 -19.59494 -18.87210 -18.43538 -17.67499 -17.19538 -16.86283 -16.75014 -16.44120 -16.00676 -15.80853 -15.33186 -15.16642 -14.90160 -14.85045 -14.68769 -14.49807 -14.40390 -14.11712 -13.94927 -13.75057 -13.49121 -13.27598 -13.20115 -13.02944 -12.79946 -12.65306 -12.63466 -12.51967 -12.25393 -12.03199 -11.92645 -11.84125 -11.65367 -11.53155 -11.33507 -11.19211 -11.09024 -10.56637 -9.86394 -9.63524 -8.90305 -8.74696 -7.80641 -5.17741 0.44853 1.42716 1.46753 1.53307 1.67260 1.83779 2.16876 2.39370 2.52581 3.31430 3.51392 3.60329 3.78550 3.81404 3.94113 3.99013 4.05677 4.09522 4.18087 4.20818 4.37490 4.40927 4.45133 4.54340 4.54932 4.63358 4.71085 4.71546 4.72452 4.74431 4.80365 4.93207 4.98353 5.08972 5.13210 5.21740 5.25114 5.31621 5.38436 5.39714 5.46392 5.54099 5.61637 5.74710 5.85986 5.94703 6.30954 6.32224 6.51721 6.96138 7.12385 7.18906 7.91310 8.29622 9.23558 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019684 B = 0.002428 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.125859 B =11528.391385 C =12214.398574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.614 5.614 3 C -0.232 4.232 4 H 0.068 0.932 5 C -0.066 4.066 6 N -0.944 5.944 7 Si 0.961 3.039 8 H -0.276 1.276 9 H -0.293 1.293 10 H -0.290 1.290 11 C 0.122 3.878 12 C 0.080 3.920 13 H 0.077 0.923 14 O -0.562 6.562 15 C 0.095 3.905 16 N -0.610 5.610 17 C 0.052 3.948 18 C 0.583 3.417 19 O -0.565 6.565 20 C -0.073 4.073 21 C -0.123 4.123 22 C -0.194 4.194 23 C 0.055 3.945 24 N -0.524 5.524 25 H 0.430 0.570 26 C -0.052 4.052 27 C -0.111 4.111 28 C -0.118 4.118 29 C -0.049 4.049 30 H 0.003 0.997 31 H 0.031 0.969 32 H 0.017 0.983 33 H 0.245 0.755 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.368 0.632 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 -26.258 19.093 32.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.336 5.336 3 C -0.362 4.362 4 H 0.086 0.914 5 C -0.259 4.259 6 N -0.593 5.593 7 Si 0.791 3.209 8 H -0.202 1.202 9 H -0.220 1.220 10 H -0.217 1.217 11 C -0.005 4.005 12 C 0.017 3.983 13 H 0.095 0.905 14 O -0.367 6.367 15 C -0.029 4.029 16 N -0.342 5.342 17 C -0.090 4.090 18 C 0.373 3.627 19 O -0.444 6.444 20 C -0.186 4.186 21 C -0.150 4.150 22 C -0.199 4.199 23 C -0.064 4.064 24 N -0.128 5.128 25 H 0.278 0.722 26 C -0.090 4.090 27 C -0.149 4.149 28 C -0.155 4.155 29 C -0.087 4.087 30 H 0.021 0.979 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.215 0.785 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.090 0.910 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.363 -25.774 19.023 32.480 hybrid contribution 0.385 1.538 -0.849 1.798 sum 5.748 -24.236 18.174 30.833 Atomic orbital electron populations 1.20557 0.82574 0.95931 0.97532 1.44046 1.02170 1.01671 1.85761 1.19410 0.93899 0.85385 1.37512 0.91410 1.25512 0.98420 1.00894 1.01117 1.70267 1.17259 1.25968 1.45803 0.85411 0.77570 0.80260 0.77685 1.20219 1.21961 1.21744 1.21555 0.96539 0.87805 0.94637 1.23006 0.93720 0.86753 0.94815 0.90454 1.86542 1.32897 1.60567 1.56688 1.22245 1.01987 0.96573 0.82075 1.47665 1.22241 1.49959 1.14301 1.22407 0.92629 0.94397 0.99547 1.17379 0.81223 0.80532 0.83551 1.90771 1.46850 1.34992 1.71825 1.20149 1.01640 1.00805 0.96005 1.21136 0.99044 1.01295 0.93575 1.19603 1.01618 1.00844 0.97881 1.21140 0.97078 1.00951 0.87228 1.42763 1.27205 1.29023 1.13801 0.72150 1.20509 0.99623 0.95380 0.93479 1.21538 0.98004 0.97311 0.98014 1.21601 1.00120 0.96266 0.97530 1.20124 0.97315 1.00844 0.90396 0.97890 0.95087 0.96441 0.94606 0.90952 0.93351 0.78526 0.86086 0.90736 0.89260 0.90958 0.87947 0.85359 0.88823 0.88567 0.88900 0.91620 0.92045 0.90082 0.90971 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.06 8.98 127.77 1.15 10.21 16 2 N -0.61 -31.38 2.88 -726.92 -2.09 -33.47 16 3 C -0.23 -13.29 9.08 84.04 0.76 -12.53 16 4 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 5 C -0.07 -3.92 5.06 84.86 0.43 -3.49 16 6 N -0.94 -58.15 10.43 21.65 0.23 -57.92 16 7 Si 0.96 48.67 29.59 68.60 2.03 50.70 16 8 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 9 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 10 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 11 C 0.12 4.70 5.36 86.38 0.46 5.17 16 12 C 0.08 2.76 3.48 30.59 0.11 2.87 16 13 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 14 O -0.56 -24.32 11.25 -136.17 -1.53 -25.85 16 15 C 0.09 2.43 5.07 86.38 0.44 2.87 16 16 N -0.61 -15.05 2.86 -851.50 -2.43 -17.48 16 17 C 0.05 0.74 8.81 127.77 1.13 1.86 16 18 C 0.58 18.40 7.33 86.45 0.63 19.03 16 19 O -0.57 -22.50 15.14 8.48 0.13 -22.37 16 20 C -0.07 -1.98 6.65 40.37 0.27 -1.71 16 21 C -0.12 -3.45 10.63 22.47 0.24 -3.21 16 22 C -0.19 -4.15 5.91 -20.11 -0.12 -4.27 16 23 C 0.06 0.93 7.02 41.63 0.29 1.23 16 24 N -0.52 -9.38 5.07 -171.29 -0.87 -10.25 16 25 H 0.43 4.91 4.88 -92.71 -0.45 4.46 16 26 C -0.05 -0.44 6.30 30.06 0.19 -0.25 16 27 C -0.11 -0.83 5.89 30.74 0.18 -0.65 16 28 C -0.12 -1.22 5.90 30.75 0.18 -1.04 16 29 C -0.05 -0.78 6.28 30.01 0.19 -0.59 16 30 H 0.00 0.15 7.56 -2.39 -0.02 0.14 16 31 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 32 H 0.02 0.97 6.83 -2.39 -0.02 0.95 16 33 H 0.24 14.74 8.31 -92.70 -0.77 13.97 16 34 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 35 H 0.05 1.89 8.04 -2.39 -0.02 1.87 16 36 H 0.37 15.56 8.61 -74.06 -0.64 14.92 16 37 H 0.12 2.16 8.07 -2.39 -0.02 2.14 16 38 H 0.07 2.13 7.50 -2.38 -0.02 2.11 16 39 H 0.09 0.69 7.56 -2.39 -0.02 0.68 16 40 H 0.07 1.01 5.49 -2.38 -0.01 1.00 16 41 H 0.10 1.18 8.03 -2.39 -0.02 1.16 16 42 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.10 0.44 8.14 -2.39 -0.02 0.43 16 45 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.07 0.55 8.11 -2.39 -0.02 0.53 16 47 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 48 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -81.26 392.38 1.85 -79.42 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.14 Total: 21.76 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 6.53 Total: 15.48 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -5.17 Total: -119.13 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -1.40 Total: -48.22 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -81.26 1.85 -79.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486354318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.862 kcal (2) G-P(sol) polarization free energy of solvation -81.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds