Wall clock time and date at job start Tue Mar 31 2020 18:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00263 * 2 1 4 4 H 1.07999 * 119.99832 * 162.25953 * 3 2 1 5 5 C 1.38808 * 119.99817 * 341.98905 * 3 2 1 6 6 N 1.31624 * 119.99897 * 345.01345 * 5 3 2 7 7 Si 1.86798 * 120.00028 * 165.01363 * 5 3 2 8 8 H 1.48500 * 109.47243 * 89.99833 * 7 5 3 9 9 H 1.48503 * 109.47126 * 209.99683 * 7 5 3 10 10 H 1.48495 * 109.47311 * 329.99821 * 7 5 3 11 11 C 1.46503 * 119.99771 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47250 * 270.00144 * 11 2 1 13 13 H 1.08998 * 109.46848 * 60.00191 * 12 11 2 14 14 O 1.42893 * 109.46895 * 300.00028 * 12 11 2 15 15 C 1.52999 * 109.46980 * 180.02562 * 12 11 2 16 16 N 1.46497 * 109.46863 * 185.00046 * 15 12 11 17 17 C 1.46495 * 120.00183 * 269.99781 * 16 15 12 18 18 C 1.34778 * 119.99996 * 89.99773 * 16 15 12 19 19 O 1.21278 * 120.00251 * 0.02562 * 18 16 15 20 20 C 1.50700 * 119.99992 * 179.97438 * 18 16 15 21 21 N 1.46500 * 109.47038 * 180.02562 * 20 18 16 22 22 C 1.46502 * 119.99835 * 270.00133 * 21 20 18 23 23 C 1.39672 * 120.00248 * 90.00268 * 21 20 18 24 24 C 1.38911 * 120.07074 * 359.72386 * 23 21 20 25 25 C 1.38110 * 119.92293 * 179.76988 * 24 23 21 26 26 C 1.38286 * 120.07355 * 0.50569 * 25 24 23 27 27 C 1.38288 * 120.15000 * 359.74304 * 26 25 24 28 28 C 1.38102 * 120.07295 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.46907 * 84.95473 * 1 2 3 30 30 H 1.08997 * 109.47164 * 204.95289 * 1 2 3 31 31 H 1.08998 * 109.47068 * 324.95782 * 1 2 3 32 32 H 0.97008 * 119.99569 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.46751 * 30.00451 * 11 2 1 34 34 H 1.09006 * 109.46877 * 150.00166 * 11 2 1 35 35 H 0.96700 * 114.00331 * 300.00129 * 14 12 11 36 36 H 1.09004 * 109.46735 * 304.99763 * 15 12 11 37 37 H 1.08991 * 109.47186 * 64.99697 * 15 12 11 38 38 H 1.09004 * 109.47119 * 89.99650 * 17 16 15 39 39 H 1.08998 * 109.47427 * 210.00342 * 17 16 15 40 40 H 1.09001 * 109.46958 * 330.00062 * 17 16 15 41 41 H 1.08996 * 109.47157 * 300.00178 * 20 18 16 42 42 H 1.09000 * 109.47158 * 60.00498 * 20 18 16 43 43 H 1.08993 * 109.47050 * 90.00378 * 22 21 20 44 44 H 1.09006 * 109.47016 * 210.00108 * 22 21 20 45 45 H 1.08994 * 109.47249 * 329.99489 * 22 21 20 46 46 H 1.07999 * 120.03931 * 0.02562 * 24 23 21 47 47 H 1.07998 * 119.96437 * 180.25291 * 25 24 23 48 48 H 1.07998 * 119.92464 * 179.72729 * 26 25 24 49 49 H 1.08001 * 119.95958 * 179.97438 * 27 26 25 50 50 H 1.08005 * 120.03416 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1912 1.2080 0.2850 5 6 1.5068 2.3585 -0.3717 6 7 0.3506 2.3049 -0.9985 7 14 2.2823 4.0127 0.0176 8 1 3.1558 4.4275 -1.1094 9 1 1.2146 5.0258 0.2150 10 1 3.0929 3.9001 1.2566 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4433 13 1 1.5000 -1.8400 1.9571 14 8 3.2247 -0.7137 2.1164 15 6 3.2180 -3.0346 1.4438 16 7 3.3578 -3.5171 2.8199 17 6 4.5221 -3.1261 3.6185 18 6 2.4154 -4.3209 3.3513 19 8 1.4518 -4.6450 2.6901 20 6 2.5596 -4.8177 4.7667 21 7 1.4151 -5.6674 5.1049 22 6 0.2122 -5.0751 5.6953 23 6 1.4707 -7.0422 4.8646 24 6 2.6083 -7.6046 4.2996 25 6 2.6618 -8.9650 4.0676 26 6 1.5806 -9.7656 4.3875 27 6 0.4446 -9.2082 4.9453 28 6 0.3863 -7.8493 5.1843 29 1 -0.3633 0.0904 -1.0237 30 1 -0.3633 -0.9317 0.4335 31 1 -0.3633 0.8414 0.5901 32 1 -0.0986 3.1245 -1.2585 33 1 1.6083 -2.0286 -0.5130 34 1 3.1500 -1.1387 -0.5133 35 1 4.0872 -0.5454 1.7128 36 1 2.6709 -3.7705 0.8545 37 1 4.2061 -2.8834 1.0096 38 1 4.3002 -2.2049 4.1574 39 1 4.7559 -3.9168 4.3313 40 1 5.3764 -2.9655 2.9609 41 1 3.4796 -5.3952 4.8571 42 1 2.5955 -3.9679 5.4482 43 1 -0.4742 -4.7796 4.9019 44 1 -0.2730 -5.8063 6.3419 45 1 0.4889 -4.1989 6.2815 46 1 3.4515 -6.9793 4.0458 47 1 3.5475 -9.4035 3.6322 48 1 1.6234 -10.8285 4.2010 49 1 -0.3982 -9.8363 5.1936 50 1 -0.5014 -7.4145 5.6196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486359906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:05 Heat of formation + Delta-G solvation = -5.209111 kcal Electronic energy + Delta-G solvation = -29513.288537 eV Core-core repulsion = 25542.442013 eV Total energy + Delta-G solvation = -3970.846524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.35117 -39.26044 -37.44576 -36.08723 -35.28991 -34.46926 -31.53539 -31.27470 -30.44187 -29.76434 -28.61202 -26.88082 -25.98631 -25.69173 -24.63104 -22.53092 -22.07909 -21.07193 -20.45113 -19.25938 -17.94633 -17.27970 -16.90305 -16.35121 -15.96990 -15.76361 -15.50384 -15.01240 -14.88120 -14.66240 -14.51542 -14.17809 -13.81078 -13.75646 -13.49477 -13.32816 -13.14514 -13.00620 -12.78762 -12.70839 -12.45794 -12.23795 -12.06552 -11.83481 -11.58428 -11.52508 -11.03265 -10.94718 -10.80996 -10.66082 -10.54619 -10.40053 -10.28950 -9.95975 -9.91943 -9.71058 -9.56373 -9.03107 -8.57885 -8.33907 -7.45618 -6.69027 -5.64028 -3.04521 1.33187 1.49983 2.60369 2.69526 3.16450 3.41964 3.48803 3.51702 3.80326 4.43390 4.55612 4.59321 4.67650 4.85289 4.90439 4.97041 4.98669 5.05004 5.09503 5.18875 5.29494 5.32239 5.34398 5.39686 5.48122 5.52044 5.60329 5.65758 5.66329 5.79333 5.87199 5.91732 5.98771 6.06343 6.11573 6.36442 6.46114 6.52130 6.57833 6.71735 6.76260 6.85269 6.98313 7.29474 7.38838 7.48175 7.76847 7.88503 8.19661 8.28065 8.45490 9.30520 9.94474 10.42006 11.41830 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.002348 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.304760 B =11924.187880 C =12215.442676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.595 5.595 3 C -0.234 4.234 4 H 0.069 0.931 5 C -0.008 4.008 6 N -0.913 5.913 7 Si 0.904 3.096 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.125 3.875 12 C 0.073 3.927 13 H 0.088 0.912 14 O -0.543 6.543 15 C 0.084 3.916 16 N -0.608 5.608 17 C 0.080 3.920 18 C 0.486 3.514 19 O -0.524 6.524 20 C 0.108 3.892 21 N -0.612 5.612 22 C 0.094 3.906 23 C 0.226 3.774 24 C -0.196 4.196 25 C -0.073 4.073 26 C -0.183 4.183 27 C -0.073 4.073 28 C -0.195 4.195 29 H 0.028 0.972 30 H -0.006 1.006 31 H 0.046 0.954 32 H 0.250 0.750 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.360 0.640 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.417 -20.910 14.700 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.316 5.316 3 C -0.364 4.364 4 H 0.086 0.914 5 C -0.205 4.205 6 N -0.560 5.560 7 Si 0.734 3.266 8 H -0.217 1.217 9 H -0.218 1.218 10 H -0.207 1.207 11 C -0.004 4.004 12 C 0.010 3.990 13 H 0.106 0.894 14 O -0.346 6.346 15 C -0.040 4.040 16 N -0.342 5.342 17 C -0.064 4.064 18 C 0.271 3.729 19 O -0.399 6.399 20 C -0.020 4.020 21 N -0.322 5.322 22 C -0.049 4.049 23 C 0.125 3.875 24 C -0.218 4.218 25 C -0.091 4.091 26 C -0.203 4.203 27 C -0.092 4.092 28 C -0.217 4.217 29 H 0.046 0.954 30 H 0.013 0.987 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.205 0.795 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.133 0.867 47 H 0.136 0.864 48 H 0.134 0.866 49 H 0.137 0.863 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.206 -20.721 14.718 26.162 hybrid contribution 0.869 1.131 -0.305 1.459 sum 7.075 -19.590 14.413 25.329 Atomic orbital electron populations 1.20803 0.82446 0.95478 0.99294 1.43780 1.01850 1.00402 1.85600 1.19127 0.95336 0.84564 1.37366 0.91351 1.24912 0.97774 0.98199 0.99610 1.70117 1.17435 1.26204 1.42211 0.86264 0.78079 0.84201 0.78034 1.21743 1.21786 1.20652 1.21298 0.96727 0.89513 0.92827 1.23173 0.93926 0.84698 0.97235 0.89405 1.86617 1.32355 1.59995 1.55660 1.22372 1.01449 0.98086 0.82070 1.47831 1.22947 1.48784 1.14617 1.21822 0.87960 1.00623 0.95952 1.21406 0.82841 0.78795 0.89833 1.90724 1.30188 1.57110 1.61897 1.21352 0.90815 0.96001 0.93825 1.45967 1.16072 1.03345 1.66791 1.21692 0.87104 0.98274 0.97826 1.17780 0.93900 0.82893 0.92950 1.20612 0.98094 0.95688 1.07418 1.20853 0.98097 0.92918 0.97266 1.20876 0.94653 0.99607 1.05184 1.20873 0.97492 0.94159 0.96697 1.20673 0.98487 0.93926 1.08632 0.95384 0.98705 0.93531 0.93961 0.93758 0.93303 0.79481 0.89492 0.90590 0.91607 0.91834 0.91007 0.87993 0.87773 0.92701 0.91142 0.91481 0.86705 0.86387 0.86649 0.86328 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.30 8.97 59.85 0.54 4.84 16 2 N -0.59 -15.28 2.88 -181.11 -0.52 -15.80 16 3 C -0.23 -6.46 9.08 -15.06 -0.14 -6.60 16 4 H 0.07 1.80 7.69 -52.49 -0.40 1.40 16 5 C -0.01 -0.23 5.08 -17.43 -0.09 -0.32 16 6 N -0.91 -27.42 10.53 55.49 0.58 -26.83 16 7 Si 0.90 22.34 29.58 -169.99 -5.03 17.31 16 8 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.13 2.55 5.36 -4.04 -0.02 2.52 16 12 C 0.07 1.29 3.48 -26.73 -0.09 1.19 16 13 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 14 O -0.54 -9.73 12.01 -35.23 -0.42 -10.16 16 15 C 0.08 1.15 5.11 -4.04 -0.02 1.13 16 16 N -0.61 -7.39 2.84 -181.58 -0.52 -7.91 16 17 C 0.08 0.66 9.88 59.84 0.59 1.25 16 18 C 0.49 6.61 7.74 -10.98 -0.09 6.53 16 19 O -0.52 -9.50 16.01 5.56 0.09 -9.41 16 20 C 0.11 1.06 4.23 -5.19 -0.02 1.04 16 21 N -0.61 -6.82 2.50 -181.00 -0.45 -7.28 16 22 C 0.09 0.90 10.23 59.85 0.61 1.52 16 23 C 0.23 2.67 6.55 -83.79 -0.55 2.12 16 24 C -0.20 -2.18 9.20 -39.38 -0.36 -2.55 16 25 C -0.07 -0.73 10.04 -39.61 -0.40 -1.13 16 26 C -0.18 -1.78 10.04 -39.55 -0.40 -2.17 16 27 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 28 C -0.19 -2.12 9.21 -39.38 -0.36 -2.49 16 29 H 0.03 0.78 7.47 -51.93 -0.39 0.39 16 30 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 31 H 0.05 1.31 7.04 -51.93 -0.37 0.95 16 32 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 35 H 0.36 5.32 9.04 45.56 0.41 5.73 16 36 H 0.09 1.32 7.42 -51.93 -0.39 0.93 16 37 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.36 6.44 -51.93 -0.33 0.02 16 40 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 41 H 0.10 0.79 5.47 -51.93 -0.28 0.50 16 42 H 0.10 0.83 7.86 -51.93 -0.41 0.42 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.55 6.20 -51.93 -0.32 0.23 16 45 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 46 H 0.12 1.16 6.15 -52.49 -0.32 0.83 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 48 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 49 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 50 H 0.12 1.15 6.14 -52.48 -0.32 0.83 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -36.06 403.57 -8.66 -44.72 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.28 Total: 3.51 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.19 Total: 5.77 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.90 Total: -57.82 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.33 Total: -19.56 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.06 -8.66 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486359906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.508 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds