Wall clock time and date at job start Tue Mar 31 2020 18:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 120.00263 * 2 1 4 4 H 1.07999 * 119.99832 * 162.25953 * 3 2 1 5 5 C 1.38808 * 119.99817 * 341.98905 * 3 2 1 6 6 N 1.31624 * 119.99897 * 345.01345 * 5 3 2 7 7 Si 1.86798 * 120.00028 * 165.01363 * 5 3 2 8 8 H 1.48500 * 109.47243 * 89.99833 * 7 5 3 9 9 H 1.48503 * 109.47126 * 209.99683 * 7 5 3 10 10 H 1.48495 * 109.47311 * 329.99821 * 7 5 3 11 11 C 1.46503 * 119.99771 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47250 * 270.00144 * 11 2 1 13 13 H 1.08998 * 109.46848 * 60.00191 * 12 11 2 14 14 O 1.42893 * 109.46895 * 300.00028 * 12 11 2 15 15 C 1.52999 * 109.46980 * 180.02562 * 12 11 2 16 16 N 1.46497 * 109.46863 * 185.00046 * 15 12 11 17 17 C 1.46495 * 120.00183 * 269.99781 * 16 15 12 18 18 C 1.34778 * 119.99996 * 89.99773 * 16 15 12 19 19 O 1.21278 * 120.00251 * 0.02562 * 18 16 15 20 20 C 1.50700 * 119.99992 * 179.97438 * 18 16 15 21 21 N 1.46500 * 109.47038 * 180.02562 * 20 18 16 22 22 C 1.46502 * 119.99835 * 270.00133 * 21 20 18 23 23 C 1.39672 * 120.00248 * 90.00268 * 21 20 18 24 24 C 1.38911 * 120.07074 * 359.72386 * 23 21 20 25 25 C 1.38110 * 119.92293 * 179.76988 * 24 23 21 26 26 C 1.38286 * 120.07355 * 0.50569 * 25 24 23 27 27 C 1.38288 * 120.15000 * 359.74304 * 26 25 24 28 28 C 1.38102 * 120.07295 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.46907 * 84.95473 * 1 2 3 30 30 H 1.08997 * 109.47164 * 204.95289 * 1 2 3 31 31 H 1.08998 * 109.47068 * 324.95782 * 1 2 3 32 32 H 0.97008 * 119.99569 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.46751 * 30.00451 * 11 2 1 34 34 H 1.09006 * 109.46877 * 150.00166 * 11 2 1 35 35 H 0.96700 * 114.00331 * 300.00129 * 14 12 11 36 36 H 1.09004 * 109.46735 * 304.99763 * 15 12 11 37 37 H 1.08991 * 109.47186 * 64.99697 * 15 12 11 38 38 H 1.09004 * 109.47119 * 89.99650 * 17 16 15 39 39 H 1.08998 * 109.47427 * 210.00342 * 17 16 15 40 40 H 1.09001 * 109.46958 * 330.00062 * 17 16 15 41 41 H 1.08996 * 109.47157 * 300.00178 * 20 18 16 42 42 H 1.09000 * 109.47158 * 60.00498 * 20 18 16 43 43 H 1.08993 * 109.47050 * 90.00378 * 22 21 20 44 44 H 1.09006 * 109.47016 * 210.00108 * 22 21 20 45 45 H 1.08994 * 109.47249 * 329.99489 * 22 21 20 46 46 H 1.07999 * 120.03931 * 0.02562 * 24 23 21 47 47 H 1.07998 * 119.96437 * 180.25291 * 25 24 23 48 48 H 1.07998 * 119.92464 * 179.72729 * 26 25 24 49 49 H 1.08001 * 119.95958 * 179.97438 * 27 26 25 50 50 H 1.08005 * 120.03416 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1912 1.2080 0.2850 5 6 1.5068 2.3585 -0.3717 6 7 0.3506 2.3049 -0.9985 7 14 2.2823 4.0127 0.0176 8 1 3.1558 4.4275 -1.1094 9 1 1.2146 5.0258 0.2150 10 1 3.0929 3.9001 1.2566 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4433 13 1 1.5000 -1.8400 1.9571 14 8 3.2247 -0.7137 2.1164 15 6 3.2180 -3.0346 1.4438 16 7 3.3578 -3.5171 2.8199 17 6 4.5221 -3.1261 3.6185 18 6 2.4154 -4.3209 3.3513 19 8 1.4518 -4.6450 2.6901 20 6 2.5596 -4.8177 4.7667 21 7 1.4151 -5.6674 5.1049 22 6 0.2122 -5.0751 5.6953 23 6 1.4707 -7.0422 4.8646 24 6 2.6083 -7.6046 4.2996 25 6 2.6618 -8.9650 4.0676 26 6 1.5806 -9.7656 4.3875 27 6 0.4446 -9.2082 4.9453 28 6 0.3863 -7.8493 5.1843 29 1 -0.3633 0.0904 -1.0237 30 1 -0.3633 -0.9317 0.4335 31 1 -0.3633 0.8414 0.5901 32 1 -0.0986 3.1245 -1.2585 33 1 1.6083 -2.0286 -0.5130 34 1 3.1500 -1.1387 -0.5133 35 1 4.0872 -0.5454 1.7128 36 1 2.6709 -3.7705 0.8545 37 1 4.2061 -2.8834 1.0096 38 1 4.3002 -2.2049 4.1574 39 1 4.7559 -3.9168 4.3313 40 1 5.3764 -2.9655 2.9609 41 1 3.4796 -5.3952 4.8571 42 1 2.5955 -3.9679 5.4482 43 1 -0.4742 -4.7796 4.9019 44 1 -0.2730 -5.8063 6.3419 45 1 0.4889 -4.1989 6.2815 46 1 3.4515 -6.9793 4.0458 47 1 3.5475 -9.4035 3.6322 48 1 1.6234 -10.8285 4.2010 49 1 -0.3982 -9.8363 5.1936 50 1 -0.5014 -7.4145 5.6196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486359906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:05 Heat of formation + Delta-G solvation = -29.488194 kcal Electronic energy + Delta-G solvation = -29514.341357 eV Core-core repulsion = 25542.442013 eV Total energy + Delta-G solvation = -3971.899344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.29458 -40.13984 -38.87582 -37.04871 -36.67953 -35.91942 -33.33226 -32.19292 -31.53529 -30.76758 -29.58737 -28.12954 -27.77713 -26.90134 -25.69227 -23.86187 -23.09030 -22.20518 -21.90535 -20.22596 -18.83089 -18.71018 -18.24826 -17.59512 -16.99860 -16.83560 -16.69027 -16.36558 -16.24277 -15.93073 -15.44130 -15.26173 -15.21513 -14.94825 -14.66963 -14.51858 -14.36432 -14.04655 -13.92354 -13.65008 -13.48030 -13.29073 -13.07300 -12.95951 -12.82307 -12.76144 -12.58721 -12.51345 -12.26884 -12.26063 -12.04772 -11.92451 -11.84376 -11.67764 -11.34823 -11.21421 -10.61764 -10.51731 -9.79342 -9.57479 -8.74371 -8.25190 -7.78379 -5.21222 0.56885 0.72429 1.46353 1.49518 1.58632 1.60690 1.87275 2.30822 2.54328 3.03272 3.34783 3.53784 3.57973 3.78291 3.88424 3.96459 4.04398 4.13475 4.18778 4.24169 4.34934 4.36888 4.40693 4.49012 4.54644 4.59415 4.65102 4.70157 4.72173 4.75858 4.79880 4.85843 4.88147 4.90244 5.04263 5.16077 5.19161 5.32626 5.35959 5.54765 5.59043 5.62813 5.70438 5.77150 5.98942 6.19394 6.32498 6.44333 6.54626 7.01822 7.17430 7.20966 7.88030 8.32856 9.26896 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.002348 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.304760 B =11924.187880 C =12215.442676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.613 5.613 3 C -0.233 4.233 4 H 0.083 0.917 5 C -0.073 4.073 6 N -0.950 5.950 7 Si 0.971 3.029 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.269 1.269 11 C 0.121 3.879 12 C 0.095 3.905 13 H 0.048 0.952 14 O -0.556 6.556 15 C 0.094 3.906 16 N -0.606 5.606 17 C 0.073 3.927 18 C 0.478 3.522 19 O -0.580 6.580 20 C 0.112 3.888 21 N -0.620 5.620 22 C 0.093 3.907 23 C 0.205 3.795 24 C -0.211 4.211 25 C -0.081 4.081 26 C -0.190 4.190 27 C -0.081 4.081 28 C -0.212 4.212 29 H 0.004 0.996 30 H 0.013 0.987 31 H 0.017 0.983 32 H 0.244 0.756 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.377 0.623 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.025 0.975 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.123 0.877 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.342 -22.001 16.205 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.336 5.336 3 C -0.363 4.363 4 H 0.101 0.899 5 C -0.265 4.265 6 N -0.599 5.599 7 Si 0.800 3.200 8 H -0.211 1.211 9 H -0.228 1.228 10 H -0.194 1.194 11 C -0.006 4.006 12 C 0.032 3.968 13 H 0.066 0.934 14 O -0.361 6.361 15 C -0.030 4.030 16 N -0.339 5.339 17 C -0.068 4.068 18 C 0.265 3.735 19 O -0.459 6.459 20 C -0.016 4.016 21 N -0.329 5.329 22 C -0.050 4.050 23 C 0.103 3.897 24 C -0.233 4.233 25 C -0.099 4.099 26 C -0.210 4.210 27 C -0.099 4.099 28 C -0.235 4.235 29 H 0.022 0.978 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.224 0.776 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.044 0.956 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.141 0.859 47 H 0.156 0.844 48 H 0.154 0.846 49 H 0.157 0.843 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.212 -21.841 16.256 28.743 hybrid contribution -0.015 1.371 -0.777 1.576 sum 9.197 -20.470 15.479 27.262 Atomic orbital electron populations 1.20475 0.83520 0.95080 0.97373 1.44038 1.01691 1.01971 1.85870 1.19556 0.95893 0.85218 1.35595 0.89880 1.25764 0.98652 1.01795 1.00333 1.70296 1.19136 1.26452 1.44056 0.85201 0.76954 0.79682 0.78178 1.21053 1.22841 1.19418 1.21541 0.96849 0.87316 0.94884 1.22651 0.93203 0.86768 0.94213 0.93362 1.86579 1.33422 1.60234 1.55894 1.22101 1.02287 0.95106 0.83501 1.47943 1.23779 1.47915 1.14222 1.22099 0.86773 1.01480 0.96461 1.22203 0.82020 0.78252 0.90984 1.90700 1.32461 1.59255 1.63481 1.21516 0.91553 0.96936 0.91560 1.46133 1.16632 1.03387 1.66769 1.21726 0.86655 0.99415 0.97185 1.18067 0.94547 0.83406 0.93631 1.20829 0.98310 0.96425 1.07743 1.21181 0.99034 0.92725 0.96962 1.21215 0.94430 1.00767 1.04609 1.21197 0.98369 0.94085 0.96277 1.20916 0.98740 0.94620 1.09178 0.97780 0.96828 0.96408 0.94720 0.93675 0.91512 0.77575 0.91160 0.87101 0.92176 0.88728 0.89132 0.85391 0.85518 0.95586 0.89584 0.89774 0.85945 0.84365 0.84604 0.84326 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.78 8.97 127.77 1.15 10.93 16 2 N -0.61 -31.65 2.88 -726.92 -2.09 -33.75 16 3 C -0.23 -12.70 9.08 84.03 0.76 -11.94 16 4 H 0.08 4.21 7.69 -2.91 -0.02 4.19 16 5 C -0.07 -4.17 5.08 84.86 0.43 -3.74 16 6 N -0.95 -58.55 10.53 21.65 0.23 -58.33 16 7 Si 0.97 46.08 29.58 68.60 2.03 48.11 16 8 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 9 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 C 0.12 4.83 5.36 86.38 0.46 5.29 16 12 C 0.09 3.26 3.48 30.59 0.11 3.37 16 13 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 14 O -0.56 -18.81 12.01 -148.98 -1.79 -20.59 16 15 C 0.09 2.43 5.11 86.38 0.44 2.87 16 16 N -0.61 -13.47 2.84 -846.79 -2.40 -15.87 16 17 C 0.07 0.94 9.88 127.77 1.26 2.20 16 18 C 0.48 12.56 7.74 87.66 0.68 13.24 16 19 O -0.58 -21.46 16.01 -3.02 -0.05 -21.51 16 20 C 0.11 1.99 4.23 85.63 0.36 2.35 16 21 N -0.62 -13.32 2.50 -726.58 -1.81 -15.14 16 22 C 0.09 1.78 10.23 127.77 1.31 3.09 16 23 C 0.20 4.69 6.55 38.21 0.25 4.94 16 24 C -0.21 -4.44 9.20 22.40 0.21 -4.23 16 25 C -0.08 -1.49 10.04 22.25 0.22 -1.26 16 26 C -0.19 -3.38 10.04 22.29 0.22 -3.16 16 27 C -0.08 -1.50 10.04 22.25 0.22 -1.28 16 28 C -0.21 -4.54 9.21 22.40 0.21 -4.33 16 29 H 0.00 0.23 7.47 -2.39 -0.02 0.21 16 30 H 0.01 0.65 8.03 -2.39 -0.02 0.63 16 31 H 0.02 1.02 7.04 -2.39 -0.02 1.00 16 32 H 0.24 14.65 8.31 -92.70 -0.77 13.88 16 33 H 0.04 1.78 8.07 -2.39 -0.02 1.76 16 34 H 0.07 2.42 8.04 -2.38 -0.02 2.40 16 35 H 0.38 9.91 9.04 -74.06 -0.67 9.24 16 36 H 0.07 2.09 7.42 -2.38 -0.02 2.07 16 37 H 0.11 2.09 7.89 -2.39 -0.02 2.07 16 38 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.09 0.64 6.44 -2.39 -0.02 0.63 16 40 H 0.09 0.86 7.89 -2.39 -0.02 0.84 16 41 H 0.13 1.58 5.47 -2.39 -0.01 1.57 16 42 H 0.13 1.67 7.86 -2.39 -0.02 1.65 16 43 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 1.32 6.20 -2.38 -0.01 1.30 16 45 H 0.08 1.27 7.89 -2.39 -0.02 1.25 16 46 H 0.12 2.24 6.15 -2.91 -0.02 2.22 16 47 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 48 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 49 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 50 H 0.13 2.40 6.14 -2.91 -0.02 2.38 16 Total: -1.00 -80.87 403.57 2.67 -78.20 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.26 Total: 20.54 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 8.30 Total: 18.34 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -6.08 Total: -123.08 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.84 Total: -42.10 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -80.87 2.67 -78.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486359906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.711 kcal (2) G-P(sol) polarization free energy of solvation -80.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds