Wall clock time and date at job start Tue Mar 31 2020 18:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 120.00214 * 2 1 4 4 C 1.52999 * 109.46877 * 270.00353 * 3 2 1 5 5 H 1.09000 * 112.96094 * 72.86083 * 4 3 2 6 6 C 1.53934 * 113.75582 * 204.49995 * 4 3 2 7 7 C 1.53939 * 86.34128 * 138.03898 * 6 4 3 8 8 N 1.47960 * 113.75875 * 301.05929 * 4 3 2 9 9 C 1.46901 * 110.99851 * 108.10433 * 8 4 3 10 10 C 1.50700 * 109.47140 * 170.00361 * 9 8 4 11 11 O 1.21291 * 119.99762 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00051 * 180.02562 * 10 9 8 13 13 C 1.37091 * 120.00017 * 179.97438 * 12 10 9 14 14 H 1.08001 * 119.99938 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99921 * 179.97438 * 13 12 10 16 16 N 1.31420 * 120.00111 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00147 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47600 * 89.99647 * 17 15 13 19 19 H 1.48503 * 109.47192 * 209.99866 * 17 15 13 20 20 H 1.48506 * 109.46883 * 329.99346 * 17 15 13 21 21 C 1.34783 * 120.00184 * 179.97438 * 2 1 3 22 22 O 1.21275 * 120.00183 * 179.97438 * 21 2 1 23 23 C 1.50697 * 119.99687 * 0.02562 * 21 2 1 24 24 H 1.09001 * 115.55460 * 34.27333 * 23 21 2 25 25 C 1.53006 * 117.49508 * 248.60743 * 23 21 2 26 26 C 1.52997 * 117.49950 * 179.97438 * 23 21 2 27 27 H 1.09002 * 117.49910 * 359.97438 * 26 23 21 28 28 C 1.53001 * 117.49889 * 214.97967 * 26 23 21 29 29 C 1.53002 * 117.50028 * 128.73254 * 28 26 23 30 30 C 1.52996 * 117.49915 * 60.07096 * 28 26 23 31 31 H 1.09005 * 109.47004 * 269.99830 * 1 2 3 32 32 H 1.08995 * 109.47233 * 29.99877 * 1 2 3 33 33 H 1.09002 * 109.46775 * 150.00162 * 1 2 3 34 34 H 1.09000 * 109.46949 * 29.99629 * 3 2 1 35 35 H 1.08998 * 109.47227 * 149.99789 * 3 2 1 36 36 H 1.08998 * 113.73828 * 252.39730 * 6 4 3 37 37 H 1.09006 * 113.73743 * 23.67951 * 6 4 3 38 38 H 1.08993 * 113.76116 * 90.59774 * 7 6 4 39 39 H 1.09004 * 113.75989 * 221.85500 * 7 6 4 40 40 H 1.09001 * 109.47146 * 289.99870 * 9 8 4 41 41 H 1.08998 * 109.47035 * 49.99823 * 9 8 4 42 42 H 0.96999 * 120.00066 * 359.97438 * 12 10 9 43 43 H 0.96994 * 119.99935 * 180.02562 * 16 15 13 44 44 H 1.08990 * 117.50086 * 359.97438 * 25 23 21 45 45 H 1.09004 * 117.49623 * 145.02605 * 25 23 21 46 46 H 1.09002 * 115.54998 * 274.39642 * 28 26 23 47 47 H 1.09003 * 117.49498 * 359.97438 * 29 28 26 48 48 H 1.08999 * 117.49869 * 145.01823 * 29 28 26 49 49 H 1.09003 * 117.49674 * 214.97943 * 30 28 26 50 50 H 1.08996 * 117.49861 * 359.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5533 2.0712 -1.9419 6 6 3.6662 2.6440 -1.5999 7 6 4.0089 1.8246 -2.8572 8 7 3.2270 0.7319 -2.2375 9 6 2.3731 0.0668 -3.2307 10 6 3.2317 -0.7326 -4.1766 11 8 4.4365 -0.7464 -4.0374 12 7 2.6609 -1.4312 -5.1779 13 6 3.4421 -2.1580 -6.0387 14 1 4.5149 -2.1703 -5.9148 15 6 2.8535 -2.8787 -7.0707 16 7 3.6024 -3.5750 -7.8962 17 14 0.9981 -2.8567 -7.2855 18 1 0.6169 -1.7370 -8.1833 19 1 0.5535 -4.1423 -7.8813 20 1 0.3488 -2.6736 -5.9625 21 6 2.1390 -1.1672 0.0005 22 8 3.3517 -1.1672 0.0001 23 6 1.3855 -2.4723 0.0005 24 1 0.4468 -2.4733 -0.5536 25 6 1.4605 -3.3313 1.2645 26 6 2.2075 -3.7627 0.0005 27 1 3.2934 -3.6677 0.0001 28 6 1.6492 -4.9559 -0.7775 29 6 2.5789 -5.6435 -1.7794 30 6 1.4214 -4.7757 -2.2796 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6085 2.0284 0.5138 35 1 3.1500 1.1384 0.5139 36 1 3.3989 3.6795 -1.8105 37 1 4.4004 2.5478 -0.8000 38 1 3.5655 2.2177 -3.7720 39 1 5.0711 1.6027 -2.9609 40 1 1.6755 -0.5990 -2.7225 41 1 1.8160 0.8172 -3.7915 42 1 1.6974 -1.4198 -5.2894 43 1 3.1916 -4.0778 -8.6168 44 1 2.0552 -2.9527 2.0957 45 1 0.5714 -3.8978 1.5415 46 1 0.9436 -5.5836 -0.2331 47 1 3.5882 -5.2454 -1.8846 48 1 2.4847 -6.7233 -1.8945 49 1 0.5660 -5.2851 -2.7236 50 1 1.6688 -3.8070 -2.7135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488669775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:06 Heat of formation + Delta-G solvation = 34.483193 kcal Electronic energy + Delta-G solvation = -30969.861308 eV Core-core repulsion = 27000.735972 eV Total energy + Delta-G solvation = -3969.125336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47199 -39.51353 -37.95910 -37.54461 -35.36594 -34.74200 -33.87816 -31.64676 -30.76073 -29.15172 -26.64951 -25.76781 -24.97929 -23.49985 -23.40835 -22.52013 -22.07382 -19.99357 -19.41721 -19.30707 -18.79042 -18.26169 -17.21247 -16.27420 -15.93149 -15.86076 -15.61156 -15.30173 -14.82468 -14.65195 -14.44698 -14.16182 -13.77638 -13.48705 -13.17314 -13.14048 -12.83483 -12.66603 -12.49372 -12.39774 -12.18119 -12.10341 -11.70311 -11.58190 -11.46241 -11.29504 -11.19788 -11.12086 -10.84212 -10.80184 -10.70839 -10.57355 -10.48504 -9.92274 -9.90879 -9.60582 -9.50316 -9.40289 -8.79821 -8.37996 -8.16689 -8.10075 -6.25320 -3.75787 2.71745 2.99385 3.03471 3.07546 3.15844 3.72230 3.82237 4.01511 4.09536 4.14037 4.50759 4.57324 4.67343 4.80658 4.82755 4.87548 4.95325 5.06004 5.10222 5.18185 5.22714 5.24701 5.26915 5.35087 5.38228 5.49558 5.50645 5.53461 5.56049 5.60804 5.62331 5.76887 5.82383 5.86407 5.91766 5.94748 5.99828 6.12227 6.15748 6.25546 6.38325 6.39929 6.45448 6.55216 6.76678 7.29389 7.49018 7.64830 8.21011 8.46832 8.67042 9.02201 9.48935 9.91757 10.88276 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.005347 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.313526 B = 5235.074344 C = 7336.949718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.618 5.618 3 C 0.140 3.860 4 C 0.004 3.996 5 H 0.073 0.927 6 C -0.137 4.137 7 C 0.017 3.983 8 N -0.424 5.424 9 C 0.014 3.986 10 C 0.457 3.543 11 O -0.553 6.553 12 N -0.595 5.595 13 C -0.299 4.299 14 H 0.118 0.882 15 C 0.042 3.958 16 N -0.884 5.884 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.542 3.458 22 O -0.500 6.500 23 C -0.186 4.186 24 H 0.120 0.880 25 C -0.147 4.147 26 C -0.083 4.083 27 H 0.120 0.880 28 C -0.134 4.134 29 C -0.168 4.168 30 C -0.172 4.172 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.367 0.633 43 H 0.272 0.728 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.540 6.833 17.920 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.352 5.352 3 C 0.017 3.983 4 C -0.108 4.108 5 H 0.091 0.909 6 C -0.175 4.175 7 C -0.112 4.112 8 N -0.147 5.147 9 C -0.119 4.119 10 C 0.243 3.757 11 O -0.434 6.434 12 N -0.235 5.235 13 C -0.427 4.427 14 H 0.136 0.864 15 C -0.161 4.161 16 N -0.524 5.524 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.196 1.196 21 C 0.329 3.671 22 O -0.373 6.373 23 C -0.207 4.207 24 H 0.138 0.862 25 C -0.185 4.185 26 C -0.102 4.102 27 H 0.137 0.863 28 C -0.152 4.152 29 C -0.205 4.205 30 C -0.209 4.209 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.200 0.800 43 H 0.082 0.918 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.117 0.883 48 H 0.111 0.889 49 H 0.109 0.891 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.688 6.109 18.142 21.925 hybrid contribution -2.402 0.476 -1.123 2.694 sum -13.090 6.585 17.019 22.458 Atomic orbital electron populations 1.21764 0.80164 1.02920 1.01452 1.47618 1.06310 1.05890 1.75409 1.21338 0.97799 0.84238 0.94905 1.23983 0.96375 0.93807 0.96586 0.90945 1.23373 0.97221 0.97431 0.99522 1.23700 1.01857 0.90632 0.95025 1.68525 1.13908 1.17198 1.15061 1.22431 0.96131 0.98635 0.94658 1.19578 0.88917 0.84165 0.83087 1.90574 1.14395 1.65356 1.73040 1.42203 1.07904 1.45277 1.28122 1.19402 0.94137 1.23231 1.05969 0.86392 1.24989 0.98016 0.96832 0.96226 1.69622 1.35159 1.30653 1.16992 0.86726 0.85750 0.78694 0.78552 1.19828 1.20202 1.19567 1.19521 0.87498 0.83921 0.76132 1.90764 1.13323 1.86564 1.46648 1.22338 1.02528 0.90955 1.04842 0.86238 1.23002 1.02827 1.01553 0.91093 1.21813 0.98987 0.91428 0.97939 0.86255 1.21756 1.03356 0.98693 0.91376 1.22968 0.96471 0.98470 1.02630 1.22971 1.00355 1.02579 0.94962 0.92834 0.91507 0.91107 0.90629 0.89277 0.91344 0.89062 0.92017 0.88764 0.90134 0.93529 0.80028 0.91757 0.88484 0.88109 0.87798 0.88262 0.88921 0.89058 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.27 59.85 0.61 1.25 16 2 N -0.62 -7.24 2.85 -181.57 -0.52 -7.75 16 3 C 0.14 1.58 5.56 -4.04 -0.02 1.55 16 4 C 0.00 0.04 3.57 -66.66 -0.24 -0.19 16 5 H 0.07 0.80 7.80 -51.93 -0.40 0.40 16 6 C -0.14 -1.63 7.84 -25.80 -0.20 -1.84 16 7 C 0.02 0.27 6.75 -2.76 -0.02 0.25 16 8 N -0.42 -7.39 4.71 -232.13 -1.09 -8.48 16 9 C 0.01 0.25 5.31 -4.98 -0.03 0.23 16 10 C 0.46 11.02 7.59 -10.99 -0.08 10.94 16 11 O -0.55 -15.74 15.13 5.55 0.08 -15.65 16 12 N -0.59 -14.68 5.09 -10.97 -0.06 -14.74 16 13 C -0.30 -8.65 10.16 -14.94 -0.15 -8.80 16 14 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 15 C 0.04 1.16 5.50 -17.46 -0.10 1.07 16 16 N -0.88 -26.26 13.96 55.50 0.77 -25.49 16 17 Si 0.88 19.72 27.74 -169.99 -4.71 15.00 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 21 C 0.54 8.10 6.69 -10.98 -0.07 8.03 16 22 O -0.50 -9.78 15.26 5.56 0.08 -9.70 16 23 C -0.19 -2.33 4.93 -91.77 -0.45 -2.78 16 24 H 0.12 1.33 6.44 -51.93 -0.33 0.99 16 25 C -0.15 -1.55 9.96 -26.71 -0.27 -1.81 16 26 C -0.08 -1.12 5.38 -90.61 -0.49 -1.61 16 27 H 0.12 1.94 7.67 -51.93 -0.40 1.55 16 28 C -0.13 -1.70 5.87 -90.62 -0.53 -2.23 16 29 C -0.17 -2.43 10.26 -26.69 -0.27 -2.70 16 30 C -0.17 -2.55 10.18 -26.69 -0.27 -2.82 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.07 0.54 5.99 -51.93 -0.31 0.23 16 34 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.09 1.19 7.19 -51.93 -0.37 0.81 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.09 7.94 -51.93 -0.41 0.67 16 38 H 0.06 0.97 7.78 -51.93 -0.40 0.57 16 39 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 40 H 0.08 1.41 7.79 -51.93 -0.40 1.00 16 41 H 0.05 0.75 7.69 -51.93 -0.40 0.35 16 42 H 0.37 8.03 5.76 -40.82 -0.24 7.79 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 48 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -36.13 406.54 -10.19 -46.32 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -8.30 Total: 15.84 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.58 Total: -1.47 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.89 Total: -56.46 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: 0.17 Total: -25.35 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.13 -10.19 -46.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488669775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.802 kcal (2) G-P(sol) polarization free energy of solvation -36.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds