Wall clock time and date at job start Tue Mar 31 2020 18:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 120.00214 * 2 1 4 4 C 1.52999 * 109.46877 * 270.00353 * 3 2 1 5 5 H 1.09000 * 112.96094 * 72.86083 * 4 3 2 6 6 C 1.53934 * 113.75582 * 204.49995 * 4 3 2 7 7 C 1.53939 * 86.34128 * 138.03898 * 6 4 3 8 8 N 1.47960 * 113.75875 * 301.05929 * 4 3 2 9 9 C 1.46901 * 110.99851 * 108.10433 * 8 4 3 10 10 C 1.50700 * 109.47140 * 170.00361 * 9 8 4 11 11 O 1.21291 * 119.99762 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00051 * 180.02562 * 10 9 8 13 13 C 1.37091 * 120.00017 * 179.97438 * 12 10 9 14 14 H 1.08001 * 119.99938 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99921 * 179.97438 * 13 12 10 16 16 N 1.31420 * 120.00111 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00147 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47600 * 89.99647 * 17 15 13 19 19 H 1.48503 * 109.47192 * 209.99866 * 17 15 13 20 20 H 1.48506 * 109.46883 * 329.99346 * 17 15 13 21 21 C 1.34783 * 120.00184 * 179.97438 * 2 1 3 22 22 O 1.21275 * 120.00183 * 179.97438 * 21 2 1 23 23 C 1.50697 * 119.99687 * 0.02562 * 21 2 1 24 24 H 1.09001 * 115.55460 * 34.27333 * 23 21 2 25 25 C 1.53006 * 117.49508 * 248.60743 * 23 21 2 26 26 C 1.52997 * 117.49950 * 179.97438 * 23 21 2 27 27 H 1.09002 * 117.49910 * 359.97438 * 26 23 21 28 28 C 1.53001 * 117.49889 * 214.97967 * 26 23 21 29 29 C 1.53002 * 117.50028 * 128.73254 * 28 26 23 30 30 C 1.52996 * 117.49915 * 60.07096 * 28 26 23 31 31 H 1.09005 * 109.47004 * 269.99830 * 1 2 3 32 32 H 1.08995 * 109.47233 * 29.99877 * 1 2 3 33 33 H 1.09002 * 109.46775 * 150.00162 * 1 2 3 34 34 H 1.09000 * 109.46949 * 29.99629 * 3 2 1 35 35 H 1.08998 * 109.47227 * 149.99789 * 3 2 1 36 36 H 1.08998 * 113.73828 * 252.39730 * 6 4 3 37 37 H 1.09006 * 113.73743 * 23.67951 * 6 4 3 38 38 H 1.08993 * 113.76116 * 90.59774 * 7 6 4 39 39 H 1.09004 * 113.75989 * 221.85500 * 7 6 4 40 40 H 1.09001 * 109.47146 * 289.99870 * 9 8 4 41 41 H 1.08998 * 109.47035 * 49.99823 * 9 8 4 42 42 H 0.96999 * 120.00066 * 359.97438 * 12 10 9 43 43 H 0.96994 * 119.99935 * 180.02562 * 16 15 13 44 44 H 1.08990 * 117.50086 * 359.97438 * 25 23 21 45 45 H 1.09004 * 117.49623 * 145.02605 * 25 23 21 46 46 H 1.09002 * 115.54998 * 274.39642 * 28 26 23 47 47 H 1.09003 * 117.49498 * 359.97438 * 29 28 26 48 48 H 1.08999 * 117.49869 * 145.01823 * 29 28 26 49 49 H 1.09003 * 117.49674 * 214.97943 * 30 28 26 50 50 H 1.08996 * 117.49861 * 359.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5533 2.0712 -1.9419 6 6 3.6662 2.6440 -1.5999 7 6 4.0089 1.8246 -2.8572 8 7 3.2270 0.7319 -2.2375 9 6 2.3731 0.0668 -3.2307 10 6 3.2317 -0.7326 -4.1766 11 8 4.4365 -0.7464 -4.0374 12 7 2.6609 -1.4312 -5.1779 13 6 3.4421 -2.1580 -6.0387 14 1 4.5149 -2.1703 -5.9148 15 6 2.8535 -2.8787 -7.0707 16 7 3.6024 -3.5750 -7.8962 17 14 0.9981 -2.8567 -7.2855 18 1 0.6169 -1.7370 -8.1833 19 1 0.5535 -4.1423 -7.8813 20 1 0.3488 -2.6736 -5.9625 21 6 2.1390 -1.1672 0.0005 22 8 3.3517 -1.1672 0.0001 23 6 1.3855 -2.4723 0.0005 24 1 0.4468 -2.4733 -0.5536 25 6 1.4605 -3.3313 1.2645 26 6 2.2075 -3.7627 0.0005 27 1 3.2934 -3.6677 0.0001 28 6 1.6492 -4.9559 -0.7775 29 6 2.5789 -5.6435 -1.7794 30 6 1.4214 -4.7757 -2.2796 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6085 2.0284 0.5138 35 1 3.1500 1.1384 0.5139 36 1 3.3989 3.6795 -1.8105 37 1 4.4004 2.5478 -0.8000 38 1 3.5655 2.2177 -3.7720 39 1 5.0711 1.6027 -2.9609 40 1 1.6755 -0.5990 -2.7225 41 1 1.8160 0.8172 -3.7915 42 1 1.6974 -1.4198 -5.2894 43 1 3.1916 -4.0778 -8.6168 44 1 2.0552 -2.9527 2.0957 45 1 0.5714 -3.8978 1.5415 46 1 0.9436 -5.5836 -0.2331 47 1 3.5882 -5.2454 -1.8846 48 1 2.4847 -6.7233 -1.8945 49 1 0.5660 -5.2851 -2.7236 50 1 1.6688 -3.8070 -2.7135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488669775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:05 Heat of formation + Delta-G solvation = 7.626995 kcal Electronic energy + Delta-G solvation = -30971.025880 eV Core-core repulsion = 27000.735972 eV Total energy + Delta-G solvation = -3970.289908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.62266 -40.74931 -39.66756 -38.74333 -36.38547 -35.99954 -35.81188 -33.80627 -32.14408 -30.15960 -27.60972 -27.42105 -26.02899 -25.13213 -24.50451 -23.53107 -23.20249 -21.35278 -21.01652 -20.49516 -20.30226 -19.76175 -18.20605 -17.81659 -17.20548 -17.01238 -16.93696 -16.62209 -16.46074 -15.94788 -15.68966 -15.41612 -15.24937 -14.97071 -14.63235 -14.38070 -14.11465 -14.04255 -13.78344 -13.69496 -13.29931 -13.06125 -13.00178 -12.88831 -12.68656 -12.55995 -12.47037 -12.35450 -12.28724 -12.02057 -11.89887 -11.84623 -11.76919 -11.63941 -11.52901 -10.97138 -10.67827 -10.50000 -10.47939 -10.27729 -9.72853 -9.30090 -8.43604 -6.04522 1.24336 1.30775 1.39948 1.66742 1.91354 2.09442 2.19681 2.65433 2.69637 3.03292 3.11420 3.15538 3.55355 3.60323 3.72983 3.80506 3.83504 4.02036 4.07520 4.10410 4.18054 4.20599 4.23690 4.30009 4.32979 4.38934 4.44270 4.48409 4.51878 4.58629 4.75167 4.78644 4.81028 4.84490 4.92822 4.96102 4.99159 5.00942 5.10606 5.20742 5.21355 5.26496 5.34418 5.46317 5.51518 5.77553 5.89228 6.12483 6.54715 6.57283 6.85296 7.35159 7.43748 7.93784 8.74635 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.005347 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.313526 B = 5235.074344 C = 7336.949718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.612 5.612 3 C 0.138 3.862 4 C 0.014 3.986 5 H 0.105 0.895 6 C -0.114 4.114 7 C 0.003 3.997 8 N -0.465 5.465 9 C 0.032 3.968 10 C 0.451 3.549 11 O -0.609 6.609 12 N -0.589 5.589 13 C -0.326 4.326 14 H 0.048 0.952 15 C -0.012 4.012 16 N -0.934 5.934 17 Si 0.962 3.038 18 H -0.255 1.255 19 H -0.271 1.271 20 H -0.232 1.232 21 C 0.531 3.469 22 O -0.565 6.565 23 C -0.187 4.187 24 H 0.143 0.857 25 C -0.109 4.109 26 C -0.118 4.118 27 H 0.073 0.927 28 C -0.099 4.099 29 C -0.192 4.192 30 C -0.182 4.182 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.387 0.613 43 H 0.279 0.721 44 H 0.093 0.907 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.060 0.940 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.118 8.268 19.857 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.344 5.344 3 C 0.015 3.985 4 C -0.096 4.096 5 H 0.122 0.878 6 C -0.152 4.152 7 C -0.126 4.126 8 N -0.188 5.188 9 C -0.100 4.100 10 C 0.239 3.761 11 O -0.493 6.493 12 N -0.231 5.231 13 C -0.455 4.455 14 H 0.066 0.934 15 C -0.211 4.211 16 N -0.575 5.575 17 Si 0.782 3.218 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.155 1.155 21 C 0.320 3.680 22 O -0.443 6.443 23 C -0.208 4.208 24 H 0.161 0.839 25 C -0.147 4.147 26 C -0.136 4.136 27 H 0.092 0.908 28 C -0.117 4.117 29 C -0.229 4.229 30 C -0.219 4.219 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.222 0.778 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.158 0.842 46 H 0.161 0.839 47 H 0.079 0.921 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.322 7.587 20.104 27.600 hybrid contribution -0.150 0.050 -1.717 1.724 sum -17.472 7.636 18.387 26.489 Atomic orbital electron populations 1.22087 0.77121 1.04371 1.03376 1.47724 1.08153 1.04955 1.73582 1.21449 0.97590 0.85200 0.94241 1.24130 0.97098 0.91803 0.96524 0.87769 1.23239 0.96690 0.98832 0.96465 1.23690 0.99462 0.91959 0.97473 1.68540 1.15666 1.19136 1.15456 1.22289 0.95086 0.98791 0.93847 1.20841 0.89011 0.83305 0.82969 1.90551 1.17478 1.66942 1.74313 1.41989 1.08409 1.44984 1.27759 1.18923 0.91897 1.26114 1.08563 0.93402 1.26093 1.05437 0.95000 0.94562 1.69813 1.38667 1.31311 1.17715 0.85408 0.76427 0.79410 0.80579 1.17934 1.19554 1.15529 1.20037 0.86979 0.85649 0.75369 1.90750 1.16143 1.87566 1.49846 1.22421 1.02404 0.89281 1.06654 0.83907 1.23105 1.02834 0.99343 0.89369 1.21695 0.97123 0.93147 1.01674 0.90832 1.21832 1.01955 0.97773 0.90115 1.22988 0.94951 0.99693 1.05262 1.22935 1.00924 1.00971 0.97057 0.90655 0.89120 0.90633 0.85935 0.92298 0.87562 0.89730 0.91486 0.93176 0.88790 0.90036 0.77771 0.91119 0.88900 0.84181 0.83940 0.92076 0.86719 0.86679 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.27 127.77 1.31 2.06 16 2 N -0.61 -12.53 2.85 -846.75 -2.41 -14.94 16 3 C 0.14 2.70 5.56 86.38 0.48 3.19 16 4 C 0.01 0.31 3.57 45.02 0.16 0.47 16 5 H 0.10 1.69 7.80 -2.39 -0.02 1.68 16 6 C -0.11 -2.51 7.84 31.24 0.25 -2.27 16 7 C 0.00 0.11 6.75 86.41 0.58 0.69 16 8 N -0.46 -16.22 4.71 -888.33 -4.18 -20.40 16 9 C 0.03 1.13 5.31 85.56 0.45 1.59 16 10 C 0.45 22.76 7.59 87.66 0.67 23.42 16 11 O -0.61 -37.82 15.13 -3.06 -0.05 -37.86 16 12 N -0.59 -29.92 5.09 -306.99 -1.56 -31.48 16 13 C -0.33 -20.14 10.16 84.04 0.85 -19.28 16 14 H 0.05 3.55 7.39 -2.91 -0.02 3.53 16 15 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 16 N -0.93 -58.07 13.96 21.66 0.30 -57.77 16 17 Si 0.96 39.80 27.74 68.60 1.90 41.71 16 18 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.23 -8.11 6.52 99.48 0.65 -7.46 16 21 C 0.53 15.61 6.69 87.66 0.59 16.20 16 22 O -0.57 -23.48 15.26 -3.01 -0.05 -23.53 16 23 C -0.19 -4.37 4.93 -11.54 -0.06 -4.42 16 24 H 0.14 2.63 6.44 -2.39 -0.02 2.62 16 25 C -0.11 -2.00 9.96 30.60 0.30 -1.70 16 26 C -0.12 -3.20 5.38 -10.79 -0.06 -3.26 16 27 H 0.07 2.69 7.67 -2.39 -0.02 2.67 16 28 C -0.10 -2.39 5.87 -10.79 -0.06 -2.46 16 29 C -0.19 -5.78 10.26 30.62 0.31 -5.47 16 30 C -0.18 -5.32 10.18 30.62 0.31 -5.01 16 31 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.09 0.57 8.07 -2.39 -0.02 0.55 16 33 H 0.08 0.75 5.99 -2.39 -0.01 0.73 16 34 H 0.12 1.29 8.07 -2.39 -0.02 1.27 16 35 H 0.06 1.54 7.19 -2.39 -0.02 1.52 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.98 7.94 -2.38 -0.02 1.97 16 38 H 0.07 2.10 7.78 -2.39 -0.02 2.08 16 39 H 0.05 2.05 8.09 -2.38 -0.02 2.04 16 40 H 0.09 3.10 7.79 -2.39 -0.02 3.08 16 41 H 0.08 2.34 7.69 -2.39 -0.02 2.33 16 42 H 0.39 16.32 5.76 -92.71 -0.53 15.79 16 43 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.14 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 49 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 50 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -93.85 406.54 0.86 -92.99 By element: Atomic # 1 Polarization: 47.44 SS G_CDS: 0.35 Total: 47.78 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 6.56 Total: 3.51 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -7.85 Total: -124.60 kcal Atomic # 8 Polarization: -61.30 SS G_CDS: -0.09 Total: -61.39 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.90 Total: 41.71 kcal Total: -93.85 0.86 -92.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488669775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.615 kcal (2) G-P(sol) polarization free energy of solvation -93.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds