Wall clock time and date at job start Tue Mar 31 2020 18:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 H 1.08997 * 112.74727 * 285.33592 * 4 3 2 6 6 C 1.53513 * 113.47746 * 154.56086 * 4 3 2 7 7 C 1.53633 * 83.53903 * 219.23281 * 6 4 3 8 8 N 1.47479 * 87.94996 * 25.97691 * 7 6 4 9 9 C 1.46899 * 111.00318 * 221.34895 * 8 7 6 10 10 C 1.50706 * 109.47166 * 285.97498 * 9 8 7 11 11 O 1.21293 * 119.99581 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00108 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00131 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99604 * 0.02562 * 13 12 10 15 15 C 1.38944 * 120.00132 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00304 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00118 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46966 * 119.99969 * 17 15 13 20 20 H 1.48500 * 109.47116 * 240.00124 * 17 15 13 21 21 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 22 22 O 1.21283 * 119.99750 * 180.02562 * 21 2 1 23 23 C 1.50702 * 119.99928 * 0.28128 * 21 2 1 24 24 H 1.09001 * 115.55135 * 33.99979 * 23 21 2 25 25 C 1.52999 * 117.49764 * 248.32984 * 23 21 2 26 26 C 1.52990 * 117.49798 * 179.70944 * 23 21 2 27 27 H 1.09005 * 117.50295 * 359.97438 * 26 23 21 28 28 C 1.53003 * 117.50066 * 214.97825 * 26 23 21 29 29 C 1.53000 * 117.49819 * 128.74454 * 28 26 23 30 30 C 1.52999 * 117.49596 * 60.08429 * 28 26 23 31 31 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 32 32 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 33 33 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 34 34 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 35 35 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 36 36 H 1.08997 * 114.17149 * 332.86491 * 6 4 3 37 37 H 1.09003 * 114.17035 * 105.56717 * 6 4 3 38 38 H 1.09001 * 113.41777 * 271.21347 * 7 6 4 39 39 H 1.08992 * 113.56810 * 140.76861 * 7 6 4 40 40 H 1.09007 * 109.46753 * 45.97052 * 9 8 7 41 41 H 1.08996 * 109.47388 * 165.97272 * 9 8 7 42 42 H 0.97005 * 120.00141 * 359.97438 * 12 10 9 43 43 H 0.96996 * 120.00456 * 180.02562 * 16 15 13 44 44 H 1.09007 * 117.49475 * 0.02562 * 25 23 21 45 45 H 1.08994 * 117.49950 * 144.99575 * 25 23 21 46 46 H 1.09000 * 115.55031 * 274.41952 * 28 26 23 47 47 H 1.08994 * 117.50426 * 0.02562 * 29 28 26 48 48 H 1.09010 * 117.49195 * 145.02353 * 29 28 26 49 49 H 1.09003 * 117.49625 * 214.97979 * 30 28 26 50 50 H 1.08993 * 117.50436 * 359.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 3.2371 1.1303 -1.9284 6 6 2.6300 3.2275 -1.5954 7 6 1.8150 3.0184 -2.8808 8 7 1.2224 1.8254 -2.2480 9 6 1.1162 0.7183 -3.2077 10 6 -0.0092 0.9949 -4.1711 11 8 -0.6590 2.0138 -4.0681 12 7 -0.2934 0.1101 -5.1472 13 6 -1.3175 0.3614 -6.0233 14 1 -1.8962 1.2687 -5.9316 15 6 -1.6102 -0.5505 -7.0299 16 7 -0.9052 -1.6537 -7.1425 17 14 -3.0052 -0.2077 -8.2242 18 1 -3.6374 1.0929 -7.8866 19 1 -2.4696 -0.1527 -9.6082 20 1 -4.0169 -1.2903 -8.1275 21 6 2.1390 -1.1672 0.0005 22 8 3.3518 -1.1671 0.0010 23 6 1.3855 -2.4723 -0.0053 24 1 0.4468 -2.4707 -0.5592 25 6 1.4610 -3.3372 1.2545 26 6 2.2077 -3.7625 -0.0113 27 1 3.2936 -3.6675 -0.0114 28 6 1.6494 -4.9524 -0.7946 29 6 2.5792 -5.6354 -1.7995 30 6 1.4216 -4.7654 -2.2960 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3632 -0.8900 -0.5138 34 1 1.6083 2.0285 0.5137 35 1 3.1499 1.1385 0.5139 36 1 2.1186 3.8157 -0.8334 37 1 3.6599 3.5416 -1.7653 38 1 2.4298 2.7882 -3.7509 39 1 1.0929 3.8119 -3.0729 40 1 2.0518 0.6244 -3.7591 41 1 0.9158 -0.2093 -2.6716 42 1 0.2265 -0.7047 -5.2298 43 1 -1.1093 -2.2902 -7.8454 44 1 2.0553 -2.9619 2.0877 45 1 0.5719 -3.9046 1.5295 46 1 0.9436 -5.5823 -0.2531 47 1 3.5886 -5.2375 -1.9024 48 1 2.4848 -6.7148 -1.9194 49 1 0.5663 -5.2727 -2.7422 50 1 1.6690 -3.7948 -2.7256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488669779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:09 Heat of formation + Delta-G solvation = 24.250223 kcal Electronic energy + Delta-G solvation = -30133.420275 eV Core-core repulsion = 26163.851204 eV Total energy + Delta-G solvation = -3969.569071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63528 -39.73843 -38.01267 -37.63880 -35.38743 -34.94667 -33.91699 -31.37504 -30.71590 -29.07489 -26.55077 -25.77666 -24.99303 -23.70263 -23.61753 -22.55580 -22.24386 -20.17461 -19.57638 -19.25367 -18.82924 -17.90329 -17.24126 -16.33584 -16.09398 -15.85030 -15.66887 -15.49547 -14.82467 -14.56279 -14.45230 -14.16787 -13.79857 -13.76677 -13.39702 -13.16355 -12.90343 -12.58086 -12.45120 -12.25189 -12.16824 -11.70837 -11.66224 -11.57192 -11.46982 -11.39797 -11.34063 -11.10032 -11.01791 -10.96599 -10.76965 -10.45069 -10.35643 -10.23069 -10.12294 -9.82302 -9.61854 -9.52179 -8.90746 -8.40033 -8.23569 -7.97222 -6.42521 -3.83462 2.47702 2.95713 3.14858 3.25579 3.32569 3.54692 3.88091 3.89159 4.06000 4.26075 4.35832 4.53099 4.59707 4.67783 4.85301 4.92616 4.99758 5.02087 5.03467 5.16903 5.20399 5.23244 5.32784 5.35518 5.40656 5.48145 5.51172 5.57538 5.61426 5.64423 5.75398 5.77919 5.78977 5.82646 5.91284 5.92974 6.01841 6.04885 6.11467 6.12108 6.21095 6.26799 6.32696 6.51128 6.65489 7.26255 7.42894 7.54115 8.04875 8.20550 8.60346 9.17103 9.53291 10.04988 10.75201 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008249 B = 0.004152 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.420376 B = 6742.819616 C = 9373.907870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.600 5.600 3 C 0.137 3.863 4 C 0.005 3.995 5 H 0.077 0.923 6 C -0.140 4.140 7 C 0.013 3.987 8 N -0.433 5.433 9 C 0.015 3.985 10 C 0.445 3.555 11 O -0.578 6.578 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.901 5.901 17 Si 0.928 3.072 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.542 3.458 22 O -0.548 6.548 23 C -0.186 4.186 24 H 0.127 0.873 25 C -0.144 4.144 26 C -0.087 4.087 27 H 0.117 0.883 28 C -0.131 4.131 29 C -0.175 4.175 30 C -0.172 4.172 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 -3.082 15.816 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.331 5.331 3 C 0.014 3.986 4 C -0.106 4.106 5 H 0.095 0.905 6 C -0.178 4.178 7 C -0.116 4.116 8 N -0.156 5.156 9 C -0.117 4.117 10 C 0.230 3.770 11 O -0.462 6.462 12 N -0.202 5.202 13 C -0.427 4.427 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.542 5.542 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.207 1.207 21 C 0.330 3.670 22 O -0.426 6.426 23 C -0.207 4.207 24 H 0.145 0.855 25 C -0.181 4.181 26 C -0.106 4.106 27 H 0.135 0.865 28 C -0.149 4.149 29 C -0.212 4.212 30 C -0.209 4.209 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.115 0.885 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.313 -2.526 16.043 17.425 hybrid contribution 0.210 -0.666 -1.402 1.566 sum 6.523 -3.193 14.641 16.344 Atomic orbital electron populations 1.21946 0.78603 1.04790 1.01281 1.47636 1.07509 1.05371 1.72621 1.21439 0.97337 0.84556 0.95279 1.23903 0.93698 0.96755 0.96278 0.90468 1.23232 1.00479 0.94956 0.99123 1.23586 0.96941 0.95740 0.95340 1.68727 1.29315 1.02939 1.14615 1.22424 0.98171 0.96301 0.94849 1.19676 0.87387 0.85959 0.83955 1.90519 1.53464 1.27836 1.74403 1.41881 1.31265 1.20258 1.26748 1.19728 1.09331 1.06443 1.07230 0.87934 1.25244 0.98888 0.95281 0.98463 1.69618 1.40386 1.10090 1.34138 0.85828 0.80431 0.78581 0.79678 1.19236 1.20780 1.20737 1.19704 0.87213 0.84530 0.75509 1.90661 1.13893 1.87396 1.50675 1.22372 1.02789 0.90244 1.05299 0.85485 1.23003 1.02845 1.01257 0.91020 1.21793 0.98620 0.91627 0.98549 0.86497 1.21765 1.03060 0.98630 0.91472 1.22977 0.95956 0.98701 1.03517 1.23019 1.00319 1.02105 0.95407 0.93071 0.88878 0.91231 0.89922 0.89875 0.88902 0.90838 0.91931 0.89075 0.93213 0.89799 0.77592 0.91940 0.88406 0.87822 0.87538 0.88728 0.88853 0.88505 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.71 59.85 0.58 1.46 16 2 N -0.60 -7.57 2.73 -181.57 -0.50 -8.07 16 3 C 0.14 1.65 5.55 -4.04 -0.02 1.63 16 4 C 0.00 0.06 3.36 -71.42 -0.24 -0.18 16 5 H 0.08 1.13 7.77 -51.93 -0.40 0.73 16 6 C -0.14 -1.61 8.01 -26.14 -0.21 -1.82 16 7 C 0.01 0.20 6.71 -7.47 -0.05 0.15 16 8 N -0.43 -7.02 4.63 -237.72 -1.10 -8.12 16 9 C 0.01 0.27 5.31 -4.97 -0.03 0.24 16 10 C 0.44 10.48 7.62 -10.98 -0.08 10.39 16 11 O -0.58 -15.45 15.34 5.55 0.09 -15.36 16 12 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 13 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 14 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 17 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 C 0.54 7.51 7.46 -10.98 -0.08 7.43 16 22 O -0.55 -9.18 15.84 5.55 0.09 -9.09 16 23 C -0.19 -2.15 4.94 -91.78 -0.45 -2.61 16 24 H 0.13 1.44 6.43 -51.93 -0.33 1.11 16 25 C -0.14 -1.36 9.95 -26.74 -0.27 -1.63 16 26 C -0.09 -0.97 5.38 -90.63 -0.49 -1.45 16 27 H 0.12 1.47 7.67 -51.93 -0.40 1.07 16 28 C -0.13 -1.34 5.87 -90.62 -0.53 -1.87 16 29 C -0.17 -1.78 10.25 -26.69 -0.27 -2.06 16 30 C -0.17 -1.99 10.18 -26.69 -0.27 -2.26 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.25 7.21 -51.93 -0.37 0.88 16 33 H 0.07 0.79 5.99 -51.93 -0.31 0.48 16 34 H 0.08 0.87 7.83 -51.93 -0.41 0.47 16 35 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 36 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 39 H 0.09 1.54 8.13 -51.93 -0.42 1.11 16 40 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16 41 H 0.08 1.48 7.78 -51.93 -0.40 1.08 16 42 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 49 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -31.93 409.31 -10.55 -42.48 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -8.28 Total: 14.57 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.66 Total: -0.46 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.93 Total: -54.24 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.17 Total: -24.45 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.93 -10.55 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488669779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.734 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds