Wall clock time and date at job start Tue Mar 31 2020 18:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 H 1.08997 * 112.74727 * 285.33592 * 4 3 2 6 6 C 1.53513 * 113.47746 * 154.56086 * 4 3 2 7 7 C 1.53633 * 83.53903 * 219.23281 * 6 4 3 8 8 N 1.47479 * 87.94996 * 25.97691 * 7 6 4 9 9 C 1.46899 * 111.00318 * 221.34895 * 8 7 6 10 10 C 1.50706 * 109.47166 * 285.97498 * 9 8 7 11 11 O 1.21293 * 119.99581 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00108 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00131 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99604 * 0.02562 * 13 12 10 15 15 C 1.38944 * 120.00132 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00304 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 120.00118 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46966 * 119.99969 * 17 15 13 20 20 H 1.48500 * 109.47116 * 240.00124 * 17 15 13 21 21 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 22 22 O 1.21283 * 119.99750 * 180.02562 * 21 2 1 23 23 C 1.50702 * 119.99928 * 0.28128 * 21 2 1 24 24 H 1.09001 * 115.55135 * 33.99979 * 23 21 2 25 25 C 1.52999 * 117.49764 * 248.32984 * 23 21 2 26 26 C 1.52990 * 117.49798 * 179.70944 * 23 21 2 27 27 H 1.09005 * 117.50295 * 359.97438 * 26 23 21 28 28 C 1.53003 * 117.50066 * 214.97825 * 26 23 21 29 29 C 1.53000 * 117.49819 * 128.74454 * 28 26 23 30 30 C 1.52999 * 117.49596 * 60.08429 * 28 26 23 31 31 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 32 32 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 33 33 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 34 34 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 35 35 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 36 36 H 1.08997 * 114.17149 * 332.86491 * 6 4 3 37 37 H 1.09003 * 114.17035 * 105.56717 * 6 4 3 38 38 H 1.09001 * 113.41777 * 271.21347 * 7 6 4 39 39 H 1.08992 * 113.56810 * 140.76861 * 7 6 4 40 40 H 1.09007 * 109.46753 * 45.97052 * 9 8 7 41 41 H 1.08996 * 109.47388 * 165.97272 * 9 8 7 42 42 H 0.97005 * 120.00141 * 359.97438 * 12 10 9 43 43 H 0.96996 * 120.00456 * 180.02562 * 16 15 13 44 44 H 1.09007 * 117.49475 * 0.02562 * 25 23 21 45 45 H 1.08994 * 117.49950 * 144.99575 * 25 23 21 46 46 H 1.09000 * 115.55031 * 274.41952 * 28 26 23 47 47 H 1.08994 * 117.50426 * 0.02562 * 29 28 26 48 48 H 1.09010 * 117.49195 * 145.02353 * 29 28 26 49 49 H 1.09003 * 117.49625 * 214.97979 * 30 28 26 50 50 H 1.08993 * 117.50436 * 359.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 3.2371 1.1303 -1.9284 6 6 2.6300 3.2275 -1.5954 7 6 1.8150 3.0184 -2.8808 8 7 1.2224 1.8254 -2.2480 9 6 1.1162 0.7183 -3.2077 10 6 -0.0092 0.9949 -4.1711 11 8 -0.6590 2.0138 -4.0681 12 7 -0.2934 0.1101 -5.1472 13 6 -1.3175 0.3614 -6.0233 14 1 -1.8962 1.2687 -5.9316 15 6 -1.6102 -0.5505 -7.0299 16 7 -0.9052 -1.6537 -7.1425 17 14 -3.0052 -0.2077 -8.2242 18 1 -3.6374 1.0929 -7.8866 19 1 -2.4696 -0.1527 -9.6082 20 1 -4.0169 -1.2903 -8.1275 21 6 2.1390 -1.1672 0.0005 22 8 3.3518 -1.1671 0.0010 23 6 1.3855 -2.4723 -0.0053 24 1 0.4468 -2.4707 -0.5592 25 6 1.4610 -3.3372 1.2545 26 6 2.2077 -3.7625 -0.0113 27 1 3.2936 -3.6675 -0.0114 28 6 1.6494 -4.9524 -0.7946 29 6 2.5792 -5.6354 -1.7995 30 6 1.4216 -4.7654 -2.2960 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3632 -0.8900 -0.5138 34 1 1.6083 2.0285 0.5137 35 1 3.1499 1.1385 0.5139 36 1 2.1186 3.8157 -0.8334 37 1 3.6599 3.5416 -1.7653 38 1 2.4298 2.7882 -3.7509 39 1 1.0929 3.8119 -3.0729 40 1 2.0518 0.6244 -3.7591 41 1 0.9158 -0.2093 -2.6716 42 1 0.2265 -0.7047 -5.2298 43 1 -1.1093 -2.2902 -7.8454 44 1 2.0553 -2.9619 2.0877 45 1 0.5719 -3.9046 1.5295 46 1 0.9436 -5.5823 -0.2531 47 1 3.5886 -5.2375 -1.9024 48 1 2.4848 -6.7148 -1.9194 49 1 0.5663 -5.2727 -2.7422 50 1 1.6690 -3.7948 -2.7256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488669779.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:08 Heat of formation + Delta-G solvation = 4.298394 kcal Electronic energy + Delta-G solvation = -30134.285451 eV Core-core repulsion = 26163.851204 eV Total energy + Delta-G solvation = -3970.434247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.79648 -40.89033 -39.61210 -38.81681 -36.44511 -35.95649 -35.84743 -33.35655 -32.17643 -30.17463 -27.57356 -27.52775 -26.00835 -25.38413 -24.49181 -23.49416 -23.14856 -21.16686 -21.04435 -20.65414 -19.93676 -19.83671 -18.26073 -17.77147 -17.31317 -17.18597 -16.90838 -16.53179 -16.44218 -15.99594 -15.66112 -15.55665 -15.36560 -15.01051 -14.78032 -14.14867 -14.05110 -13.87840 -13.75955 -13.56158 -13.32711 -13.21196 -12.97342 -12.84592 -12.58130 -12.50253 -12.46141 -12.40173 -12.31019 -12.13834 -11.96979 -11.88214 -11.81954 -11.63874 -11.50686 -10.99636 -10.81409 -10.54222 -10.43154 -10.04565 -9.92749 -9.48085 -8.48233 -5.97533 1.34734 1.40426 1.45440 1.54585 1.98272 1.99665 2.26752 2.66423 2.81365 3.02821 3.16909 3.29023 3.45811 3.56432 3.70225 3.79273 3.81929 4.01476 4.11961 4.13737 4.16958 4.18056 4.22282 4.30106 4.35045 4.39420 4.42747 4.44315 4.49711 4.60806 4.70215 4.79742 4.80588 4.83012 4.85026 4.94907 4.98670 5.04040 5.09014 5.20390 5.21943 5.25996 5.32485 5.34239 5.39396 5.55460 5.88659 6.04931 6.40287 6.56229 7.09958 7.15622 7.51427 8.06460 8.69364 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008249 B = 0.004152 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.420376 B = 6742.819616 C = 9373.907870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.599 5.599 3 C 0.137 3.863 4 C 0.008 3.992 5 H 0.064 0.936 6 C -0.111 4.111 7 C 0.001 3.999 8 N -0.444 5.444 9 C 0.033 3.967 10 C 0.445 3.555 11 O -0.611 6.611 12 N -0.573 5.573 13 C -0.331 4.331 14 H 0.080 0.920 15 C -0.011 4.011 16 N -0.920 5.920 17 Si 0.992 3.008 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.269 1.269 21 C 0.537 3.463 22 O -0.583 6.583 23 C -0.198 4.198 24 H 0.129 0.871 25 C -0.117 4.117 26 C -0.096 4.096 27 H 0.098 0.902 28 C -0.118 4.118 29 C -0.171 4.171 30 C -0.190 4.190 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.393 0.607 43 H 0.277 0.723 44 H 0.100 0.900 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.099 0.901 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 -3.671 17.221 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.329 5.329 3 C 0.014 3.986 4 C -0.102 4.102 5 H 0.082 0.918 6 C -0.150 4.150 7 C -0.128 4.128 8 N -0.166 5.166 9 C -0.099 4.099 10 C 0.232 3.768 11 O -0.497 6.497 12 N -0.210 5.210 13 C -0.460 4.460 14 H 0.098 0.902 15 C -0.211 4.211 16 N -0.561 5.561 17 Si 0.816 3.184 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.195 1.195 21 C 0.326 3.674 22 O -0.464 6.464 23 C -0.219 4.219 24 H 0.147 0.853 25 C -0.155 4.155 26 C -0.115 4.115 27 H 0.116 0.884 28 C -0.136 4.136 29 C -0.207 4.207 30 C -0.227 4.227 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.226 0.774 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.106 0.894 48 H 0.130 0.870 49 H 0.118 0.882 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.987 -3.120 17.459 18.719 hybrid contribution 0.343 -0.446 -1.833 1.917 sum 6.330 -3.566 15.626 17.233 Atomic orbital electron populations 1.21957 0.77857 1.03780 1.02669 1.47731 1.07976 1.05387 1.71837 1.21514 0.97885 0.84833 0.94365 1.23901 0.91799 0.98159 0.96367 0.91797 1.23184 1.01329 0.93627 0.96811 1.23639 0.97119 0.94932 0.97132 1.68758 1.31259 1.02323 1.14292 1.22202 0.95942 0.97546 0.94205 1.20501 0.87732 0.84829 0.83706 1.90487 1.54919 1.29076 1.75203 1.41952 1.31187 1.20718 1.27187 1.19680 1.10724 1.06508 1.09097 0.90218 1.26033 1.00933 0.94746 0.99399 1.69685 1.41272 1.10495 1.34668 0.84882 0.77585 0.78371 0.77575 1.19685 1.19743 1.19456 1.20088 0.86935 0.85470 0.74862 1.90639 1.15361 1.87935 1.52503 1.22353 1.02653 0.89446 1.07417 0.85325 1.23117 1.03087 0.99362 0.89886 1.21754 0.97739 0.91731 1.00284 0.88391 1.21833 1.02970 0.98295 0.90536 1.23052 0.95207 0.99493 1.02987 1.22949 1.01367 1.01463 0.96916 0.90433 0.90736 0.91334 0.87908 0.89685 0.87014 0.88426 0.92703 0.91051 0.92742 0.89125 0.77399 0.91313 0.88190 0.85243 0.85430 0.89396 0.87041 0.88247 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.74 9.71 127.77 1.24 2.98 16 2 N -0.60 -14.49 2.73 -846.74 -2.31 -16.80 16 3 C 0.14 3.08 5.55 86.38 0.48 3.55 16 4 C 0.01 0.21 3.36 42.19 0.14 0.35 16 5 H 0.06 1.84 7.77 -2.39 -0.02 1.82 16 6 C -0.11 -2.35 8.01 30.98 0.25 -2.10 16 7 C 0.00 0.03 6.71 83.62 0.56 0.59 16 8 N -0.44 -14.32 4.63 -905.99 -4.20 -18.51 16 9 C 0.03 1.24 5.31 85.56 0.45 1.69 16 10 C 0.45 21.62 7.62 87.66 0.67 22.29 16 11 O -0.61 -33.71 15.34 -3.07 -0.05 -33.76 16 12 N -0.57 -30.01 5.29 -306.99 -1.62 -31.63 16 13 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 14 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 15 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 16 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 17 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 C 0.54 14.61 7.46 87.66 0.65 15.27 16 22 O -0.58 -19.59 15.84 -3.04 -0.05 -19.64 16 23 C -0.20 -4.40 4.94 -11.54 -0.06 -4.46 16 24 H 0.13 2.82 6.43 -2.39 -0.02 2.80 16 25 C -0.12 -1.95 9.95 30.59 0.30 -1.65 16 26 C -0.10 -2.05 5.38 -10.80 -0.06 -2.11 16 27 H 0.10 2.49 7.67 -2.38 -0.02 2.47 16 28 C -0.12 -2.27 5.87 -10.79 -0.06 -2.33 16 29 C -0.17 -3.36 10.25 30.62 0.31 -3.05 16 30 C -0.19 -4.41 10.18 30.62 0.31 -4.10 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.94 7.21 -2.39 -0.02 1.93 16 33 H 0.07 1.51 5.99 -2.39 -0.01 1.49 16 34 H 0.10 1.90 7.83 -2.39 -0.02 1.89 16 35 H 0.08 1.93 7.42 -2.38 -0.02 1.91 16 36 H 0.11 1.99 7.95 -2.39 -0.02 1.97 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.74 7.70 -2.39 -0.02 1.73 16 39 H 0.07 2.45 8.13 -2.39 -0.02 2.43 16 40 H 0.05 1.99 7.56 -2.38 -0.02 1.97 16 41 H 0.09 3.26 7.78 -2.39 -0.02 3.24 16 42 H 0.39 19.94 7.90 -92.70 -0.73 19.21 16 43 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 49 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -70.52 409.31 0.77 -69.75 By element: Atomic # 1 Polarization: 46.37 SS G_CDS: 0.21 Total: 46.58 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.48 Total: 8.76 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -7.85 Total: -116.62 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.10 Total: -53.40 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.52 0.77 -69.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488669779.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.045 kcal (2) G-P(sol) polarization free energy of solvation -70.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds