Wall clock time and date at job start Tue Mar 31 2020 18:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 120.00165 * 2 1 4 4 H 1.08004 * 119.99744 * 322.03513 * 3 2 1 5 5 C 1.38803 * 120.00222 * 142.03599 * 3 2 1 6 6 N 1.31627 * 120.00270 * 157.02430 * 5 3 2 7 7 Si 1.86802 * 120.00115 * 337.02186 * 5 3 2 8 8 H 1.48498 * 109.47065 * 95.67924 * 7 5 3 9 9 H 1.48500 * 109.47509 * 215.68165 * 7 5 3 10 10 H 1.48503 * 109.46794 * 335.67973 * 7 5 3 11 11 C 1.46499 * 120.00057 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47075 * 89.99710 * 11 2 1 13 13 C 1.53006 * 109.46789 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.46855 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99717 * 180.02562 * 14 13 12 16 16 O 1.21608 * 120.00107 * 359.72709 * 15 14 13 17 17 C 1.47423 * 119.99538 * 179.72330 * 15 14 13 18 18 C 1.36097 * 126.44238 * 180.02562 * 17 15 14 19 19 O 1.34257 * 106.94707 * 179.97438 * 18 17 15 20 20 C 1.34055 * 108.22843 * 359.97438 * 19 18 17 21 21 C 1.50701 * 125.38221 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.46914 * 60.02313 * 21 20 19 23 23 C 1.52999 * 109.46799 * 179.97438 * 22 21 20 24 24 C 1.53009 * 109.46869 * 60.00510 * 23 22 21 25 25 C 1.53003 * 109.46994 * 299.99371 * 24 23 22 26 26 C 1.52999 * 109.46799 * 60.00586 * 25 24 23 27 27 N 1.29940 * 109.24009 * 359.74960 * 20 19 18 28 28 H 1.08994 * 109.47554 * 265.65340 * 1 2 3 29 29 H 1.09002 * 109.46986 * 25.65312 * 1 2 3 30 30 H 1.08998 * 109.46931 * 145.64641 * 1 2 3 31 31 H 0.97001 * 120.00077 * 180.02562 * 6 5 3 32 32 H 1.09004 * 109.46945 * 330.00256 * 11 2 1 33 33 H 1.08998 * 109.46957 * 209.99928 * 11 2 1 34 34 H 1.09004 * 109.46789 * 60.00450 * 12 11 2 35 35 H 1.08998 * 109.47406 * 299.99942 * 12 11 2 36 36 H 1.09004 * 109.46891 * 60.00753 * 13 12 11 37 37 H 1.08998 * 109.47296 * 300.00251 * 13 12 11 38 38 H 0.97001 * 119.99675 * 359.72739 * 14 13 12 39 39 H 1.07996 * 126.52941 * 0.02562 * 18 17 15 40 40 H 1.09000 * 109.47132 * 180.02562 * 21 20 19 41 41 H 1.08991 * 109.47097 * 300.00541 * 22 21 20 42 42 H 1.09002 * 109.46914 * 60.00438 * 22 21 20 43 43 H 1.09000 * 109.47240 * 300.00350 * 23 22 21 44 44 H 1.09002 * 109.46894 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47003 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47320 * 59.99889 * 24 23 22 47 47 H 1.08991 * 109.47415 * 300.00425 * 25 24 23 48 48 H 1.09002 * 109.46914 * 180.02562 * 25 24 23 49 49 H 1.09002 * 109.46894 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.47760 * 59.99720 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0223 -0.5754 5 6 3.3175 1.3131 0.7395 6 7 4.2044 2.2305 0.4165 7 14 3.6304 0.1824 2.1931 8 1 4.4680 -0.9638 1.7573 9 1 4.3368 0.9336 3.2616 10 1 2.3350 -0.3216 2.7159 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 6 3.2181 -3.0345 -1.4438 14 7 3.4627 -3.4565 -2.8252 15 6 4.1253 -4.6039 -3.0719 16 8 4.5245 -5.2863 -2.1479 17 6 4.3662 -5.0316 -4.4620 18 6 5.0161 -6.1593 -4.8598 19 8 5.0104 -6.1613 -6.2024 20 6 4.3709 -5.0599 -6.6207 21 6 4.1426 -4.6770 -8.0602 22 6 3.3282 -5.7699 -8.7556 23 6 3.0959 -5.3809 -10.2169 24 6 4.4441 -5.2224 -10.9229 25 6 5.2585 -4.1295 -10.2276 26 6 5.4908 -4.5185 -8.7662 27 7 3.9746 -4.3769 -5.5887 28 1 -0.3634 -0.0779 1.0246 29 1 -0.3633 0.9264 -0.4449 30 1 -0.3633 -0.8484 -0.5799 31 1 5.0207 2.3191 0.9330 32 1 1.6084 -2.0286 0.5129 33 1 3.1499 -1.1386 0.5133 34 1 3.0416 -0.9499 -1.9567 35 1 1.5001 -1.8399 -1.9571 36 1 2.6293 -3.7946 -0.9302 37 1 4.1705 -2.9040 -0.9300 38 1 3.1440 -2.9123 -3.5622 39 1 5.4525 -6.9101 -4.2178 40 1 3.5971 -3.7343 -8.1034 41 1 3.8736 -6.7125 -8.7123 42 1 2.3676 -5.8825 -8.2529 43 1 2.5503 -4.4382 -10.2597 44 1 2.5153 -6.1592 -10.7122 45 1 4.2786 -4.9457 -11.9642 46 1 4.9897 -6.1650 -10.8802 47 1 4.7129 -3.1870 -10.2704 48 1 6.2188 -4.0163 -10.7308 49 1 6.0714 -3.7402 -8.2710 50 1 6.0364 -5.4612 -8.7234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490283053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:22 Heat of formation + Delta-G solvation = -42.066948 kcal Electronic energy + Delta-G solvation = -28354.346519 eV Core-core repulsion = 24381.901720 eV Total energy + Delta-G solvation = -3972.444799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.57935 -40.70884 -39.40151 -38.22481 -36.28161 -35.96729 -33.86908 -33.35130 -32.31347 -31.70669 -30.18475 -28.19564 -27.37781 -25.05379 -24.67901 -23.53605 -23.31526 -22.53402 -22.21920 -21.54020 -20.53277 -19.20586 -18.75208 -17.88728 -17.61614 -17.38079 -17.09718 -16.61039 -16.54053 -15.83491 -15.57517 -15.39787 -15.28505 -15.11057 -15.00929 -14.83133 -14.65940 -14.45677 -14.05678 -13.57903 -13.53318 -13.38996 -13.14404 -13.00986 -12.73400 -12.70485 -12.47811 -12.39223 -12.23132 -12.19059 -12.04411 -11.98039 -11.77291 -11.50003 -11.41078 -11.40463 -11.21244 -11.13417 -10.64955 -10.33572 -10.02234 -8.78442 -8.22818 -5.60431 -0.01278 0.85143 1.29445 1.39321 1.47924 1.50492 1.96668 2.12417 2.40004 2.66687 3.01646 3.40502 3.54334 3.63407 3.74993 3.80308 4.01169 4.01518 4.13060 4.23231 4.29698 4.35866 4.40680 4.44589 4.49739 4.52055 4.55792 4.57388 4.66775 4.69223 4.71645 4.75780 4.87858 5.00540 5.03229 5.10147 5.13170 5.13458 5.18876 5.23299 5.24032 5.24522 5.37297 5.38115 5.39553 5.56575 5.92675 6.14804 6.20773 6.50375 6.95802 6.98050 7.61352 8.03632 8.96796 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.002106 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.459603 B =13294.975680 C =13863.446890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.626 5.626 3 C -0.260 4.260 4 H 0.042 0.958 5 C -0.019 4.019 6 N -0.946 5.946 7 Si 0.939 3.061 8 H -0.274 1.274 9 H -0.307 1.307 10 H -0.259 1.259 11 C 0.135 3.865 12 C -0.128 4.128 13 C 0.127 3.873 14 N -0.703 5.703 15 C 0.597 3.403 16 O -0.570 6.570 17 C -0.101 4.101 18 C 0.031 3.969 19 O -0.189 6.189 20 C 0.211 3.789 21 C 0.011 3.989 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.113 4.113 27 N -0.484 5.484 28 H 0.015 0.985 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.263 0.737 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.415 0.585 39 H 0.258 0.742 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 -21.725 -24.227 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.351 5.351 3 C -0.390 4.390 4 H 0.060 0.940 5 C -0.216 4.216 6 N -0.590 5.590 7 Si 0.767 3.233 8 H -0.201 1.201 9 H -0.236 1.236 10 H -0.183 1.183 11 C 0.010 3.990 12 C -0.168 4.168 13 C 0.003 3.997 14 N -0.353 5.353 15 C 0.384 3.616 16 O -0.451 6.451 17 C -0.220 4.220 18 C -0.044 4.044 19 O -0.074 6.074 20 C 0.001 3.999 21 C -0.009 4.009 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.153 4.153 26 C -0.151 4.151 27 N -0.213 5.213 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.251 0.749 39 H 0.274 0.726 40 H 0.134 0.866 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.080 0.920 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.387 -21.522 -23.534 31.893 hybrid contribution 0.767 -0.115 0.970 1.242 sum 0.381 -21.637 -22.564 31.264 Atomic orbital electron populations 1.21210 0.82087 1.00440 0.98497 1.44195 1.02450 1.01384 1.87054 1.18681 1.05937 0.91614 1.22760 0.93985 1.26078 0.96952 0.98451 1.00121 1.70004 1.09246 1.38909 1.40809 0.85921 0.78302 0.78388 0.80650 1.20130 1.23580 1.18280 1.21144 0.95747 0.87473 0.94680 1.22119 1.00366 0.94381 0.99983 1.21345 0.99895 0.96531 0.81950 1.45848 1.56334 1.23194 1.09887 1.17028 0.77603 0.80982 0.86014 1.90791 1.53441 1.55602 1.45228 1.21656 1.09044 0.97912 0.93355 1.25804 0.98459 0.99502 0.80604 1.84408 1.59767 1.41511 1.21735 1.26914 0.92670 0.81956 0.98384 1.20077 0.99499 1.01427 0.79874 1.21616 0.99500 0.97245 0.96594 1.21524 0.97858 1.02508 0.93408 1.21587 0.95655 0.99075 0.99566 1.21521 1.01164 0.99247 0.93413 1.21622 0.94318 1.02596 0.96598 1.70754 1.22737 1.30476 0.97312 0.96655 0.94022 0.92042 0.92829 0.91030 0.95061 0.93207 0.90099 0.90218 0.93005 0.74899 0.72601 0.86625 0.90903 0.91648 0.91272 0.90470 0.90799 0.91593 0.91317 0.90668 0.92018 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.62 10.70 127.77 1.37 5.98 16 2 N -0.63 -29.33 2.47 -726.95 -1.79 -31.13 16 3 C -0.26 -14.83 9.88 84.03 0.83 -14.00 16 4 H 0.04 2.65 8.06 -2.91 -0.02 2.63 16 5 C -0.02 -1.14 5.29 84.86 0.45 -0.69 16 6 N -0.95 -59.69 13.97 21.65 0.30 -59.39 16 7 Si 0.94 46.93 25.10 68.60 1.72 48.65 16 8 H -0.27 -13.15 6.68 99.48 0.66 -12.49 16 9 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 10 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 11 C 0.14 5.57 4.53 86.38 0.39 5.96 16 12 C -0.13 -4.56 5.65 30.60 0.17 -4.38 16 13 C 0.13 4.13 5.67 86.38 0.49 4.62 16 14 N -0.70 -21.41 5.55 -466.36 -2.59 -24.00 16 15 C 0.60 18.69 7.81 86.66 0.68 19.37 16 16 O -0.57 -20.51 16.89 -4.06 -0.07 -20.58 16 17 C -0.10 -2.65 6.99 40.41 0.28 -2.36 16 18 C 0.03 0.61 11.95 67.32 0.80 1.41 16 19 O -0.19 -3.50 10.73 0.33 0.00 -3.50 16 20 C 0.21 4.13 6.81 88.39 0.60 4.73 16 21 C 0.01 0.14 2.66 -11.54 -0.03 0.11 16 22 C -0.11 -1.12 5.19 30.59 0.16 -0.97 16 23 C -0.12 -0.82 5.92 30.60 0.18 -0.64 16 24 C -0.12 -0.78 5.92 30.60 0.18 -0.60 16 25 C -0.12 -0.92 5.92 30.59 0.18 -0.74 16 26 C -0.11 -1.25 5.19 30.60 0.16 -1.09 16 27 N -0.48 -12.13 11.06 -293.02 -3.24 -15.37 16 28 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.04 1.58 8.00 -2.39 -0.02 1.56 16 30 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 31 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 32 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 33 H 0.03 1.45 3.38 -2.39 -0.01 1.44 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.41 11.75 8.20 -92.71 -0.76 10.99 16 39 H 0.26 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -73.05 403.22 1.36 -71.70 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.12 Total: 16.90 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 6.90 Total: 16.71 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -7.32 Total: -129.88 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.06 Total: -24.07 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.72 Total: 48.65 kcal Total: -73.05 1.36 -71.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490283053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.629 kcal (2) G-P(sol) polarization free energy of solvation -73.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds