Wall clock time and date at job start Tue Mar 31 2020 18:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00094 * 2 1 4 4 C 1.50700 * 109.47326 * 270.00383 * 3 2 1 5 5 O 1.21284 * 119.99664 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00598 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00501 * 179.97438 * 6 4 3 8 8 H 1.09000 * 115.56506 * 9.28672 * 7 6 4 9 9 C 1.53032 * 117.50303 * 223.58645 * 7 6 4 10 10 C 1.52813 * 117.50609 * 155.00109 * 7 6 4 11 11 C 1.53182 * 117.71408 * 215.10141 * 10 7 6 12 12 C 1.53346 * 108.76543 * 201.11882 * 11 10 7 13 13 N 1.46845 * 108.81631 * 308.68570 * 12 11 10 14 14 C 1.36937 * 120.38271 * 236.88241 * 13 12 11 15 15 H 1.07997 * 120.00335 * 28.90439 * 14 13 12 16 16 C 1.38819 * 119.99803 * 208.90270 * 14 13 12 17 17 N 1.31615 * 119.99973 * 17.85586 * 16 14 13 18 18 Si 1.86800 * 120.00086 * 197.84983 * 16 14 13 19 19 H 1.48501 * 109.46914 * 60.00338 * 18 16 14 20 20 H 1.48495 * 109.46958 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46750 * 300.00379 * 18 16 14 22 22 C 1.46844 * 119.23414 * 56.89473 * 13 12 11 23 23 C 1.53183 * 117.71201 * 359.85737 * 10 7 6 24 24 C 1.34775 * 119.99887 * 179.97438 * 2 1 3 25 25 O 1.21283 * 119.99913 * 179.97438 * 24 2 1 26 26 C 1.50698 * 120.00190 * 0.02562 * 24 2 1 27 27 C 1.53006 * 117.49666 * 248.74427 * 26 24 2 28 28 C 1.53007 * 117.49900 * 180.08716 * 26 24 2 29 29 H 1.08993 * 109.47387 * 90.00200 * 1 2 3 30 30 H 1.09009 * 109.47157 * 210.00351 * 1 2 3 31 31 H 1.09002 * 109.47196 * 329.99812 * 1 2 3 32 32 H 1.08997 * 109.47737 * 149.99625 * 3 2 1 33 33 H 1.09003 * 109.47419 * 30.00057 * 3 2 1 34 34 H 0.97000 * 119.99510 * 359.97438 * 6 4 3 35 35 H 1.09007 * 117.50367 * 145.04452 * 9 7 6 36 36 H 1.09005 * 117.53314 * 359.97438 * 9 7 6 37 37 H 1.09006 * 109.58753 * 81.33219 * 11 10 7 38 38 H 1.08998 * 109.59006 * 320.90353 * 11 10 7 39 39 H 1.09005 * 109.58346 * 188.88842 * 12 11 10 40 40 H 1.09001 * 109.58315 * 68.48677 * 12 11 10 41 41 H 0.97000 * 120.00241 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.57731 * 62.91007 * 22 13 12 43 43 H 1.09001 * 109.57945 * 183.30783 * 22 13 12 44 44 H 1.09007 * 109.58475 * 39.10090 * 23 10 7 45 45 H 1.08994 * 109.59115 * 278.67378 * 23 10 7 46 46 H 1.08997 * 115.55156 * 34.40569 * 26 24 2 47 47 H 1.08999 * 117.49799 * 359.97438 * 27 26 24 48 48 H 1.08994 * 117.50073 * 145.01707 * 27 26 24 49 49 H 1.09002 * 117.49316 * 214.97762 * 28 26 24 50 50 H 1.08997 * 117.49435 * 359.97185 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 8 2.0549 1.0210 -2.3426 6 7 3.1107 2.8515 -1.6672 7 6 3.3553 3.2742 -3.0483 8 1 2.8394 2.6966 -3.8154 9 6 4.7469 3.8137 -3.3864 10 6 3.5553 4.7674 -3.3045 11 6 3.0144 5.3438 -4.6167 12 6 3.7491 6.6554 -4.9192 13 7 3.6870 7.5177 -3.7323 14 6 3.1499 8.7746 -3.8167 15 1 2.3822 8.9859 -4.5464 16 6 3.5921 9.7770 -2.9643 17 7 4.7381 9.6440 -2.3307 18 14 2.5610 11.3148 -2.7166 19 1 1.2334 10.9375 -2.1684 20 1 3.2493 12.2245 -1.7660 21 1 2.3807 12.0049 -4.0192 22 6 4.2077 7.0169 -2.4539 23 6 3.4824 5.7126 -2.1013 24 6 2.1389 -1.1672 0.0005 25 8 3.3517 -1.1672 0.0001 26 6 1.3854 -2.4723 0.0005 27 6 1.4578 -3.3298 1.2656 28 6 2.2075 -3.7627 0.0032 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 3.1499 1.1384 0.5139 33 1 1.6085 2.0284 0.5138 34 1 3.4252 3.3978 -0.9299 35 1 5.1464 3.5910 -4.3759 36 1 5.4807 3.8547 -2.5813 37 1 1.9463 5.5376 -4.5178 38 1 3.1858 4.6339 -5.4258 39 1 3.2702 7.1567 -5.7604 40 1 4.7902 6.4432 -5.1625 41 1 5.0470 10.3443 -1.7348 42 1 5.2772 6.8272 -2.5443 43 1 4.0306 7.7561 -1.6726 44 1 3.9645 5.2474 -1.2414 45 1 2.4396 5.9262 -1.8670 46 1 0.4479 -2.4739 -0.5555 47 1 2.0508 -2.9501 2.0977 48 1 0.5682 -3.8958 1.5416 49 1 1.8107 -4.6133 -0.5509 50 1 3.2933 -3.6676 0.0045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490596281.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:50 Heat of formation + Delta-G solvation = 9.561751 kcal Electronic energy + Delta-G solvation = -29107.025497 eV Core-core repulsion = 25136.819486 eV Total energy + Delta-G solvation = -3970.206011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.66478 -39.67569 -38.36593 -36.55073 -35.70041 -35.35845 -33.19301 -31.54754 -30.11827 -29.42030 -28.12569 -26.90465 -24.37411 -24.21227 -22.81288 -22.48065 -22.02624 -20.93939 -20.33455 -19.26588 -18.23779 -17.84501 -17.47565 -16.82276 -16.37082 -15.78110 -15.51076 -15.17211 -14.82338 -14.70080 -14.41651 -14.08878 -13.72368 -13.54271 -13.36706 -13.20746 -13.03804 -12.95465 -12.67593 -12.63746 -12.28109 -12.21478 -11.91797 -11.70002 -11.49800 -11.35716 -10.99743 -10.96257 -10.86731 -10.72943 -10.52356 -10.30749 -10.20901 -10.10736 -9.96320 -9.72042 -9.59160 -9.38352 -8.93635 -8.47545 -8.43255 -6.64878 -5.80180 -3.23039 2.14377 2.51944 2.55705 3.20757 3.36904 3.42740 3.44136 3.51567 4.10718 4.20227 4.40186 4.48667 4.50296 4.63048 4.68223 4.78689 4.88223 5.00784 5.06801 5.14610 5.16015 5.17284 5.19267 5.37934 5.38296 5.43054 5.51420 5.55700 5.63141 5.76049 5.86878 6.00349 6.06692 6.10671 6.13198 6.27879 6.43935 6.56047 6.59372 6.65225 6.70635 6.82942 6.99150 6.99552 7.32483 7.49918 7.63418 7.78413 7.88165 8.20759 8.45363 9.20770 9.84422 10.41333 11.27606 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024230 B = 0.002113 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.327331 B =13249.209105 C =13663.984940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.096 3.904 4 C 0.500 3.500 5 O -0.536 6.536 6 N -0.694 5.694 7 C 0.070 3.930 8 H 0.129 0.871 9 C -0.182 4.182 10 C -0.097 4.097 11 C -0.098 4.098 12 C 0.149 3.851 13 N -0.589 5.589 14 C -0.253 4.253 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.173 3.827 23 C -0.104 4.104 24 C 0.551 3.449 25 O -0.537 6.537 26 C -0.192 4.192 27 C -0.153 4.153 28 C -0.148 4.148 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.402 0.598 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.090 0.910 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.126 0.874 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 -22.394 8.028 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.329 5.329 3 C -0.031 4.031 4 C 0.284 3.716 5 O -0.413 6.413 6 N -0.344 5.344 7 C -0.036 4.036 8 H 0.147 0.853 9 C -0.221 4.221 10 C -0.098 4.098 11 C -0.137 4.137 12 C 0.023 3.977 13 N -0.312 5.312 14 C -0.383 4.383 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.209 1.209 22 C 0.047 3.953 23 C -0.143 4.143 24 C 0.339 3.661 25 O -0.413 6.413 26 C -0.213 4.213 27 C -0.190 4.190 28 C -0.185 4.185 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.237 0.763 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.108 0.892 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.730 -22.759 7.485 25.174 hybrid contribution -0.381 1.239 0.391 1.354 sum -8.110 -21.519 7.876 24.308 Atomic orbital electron populations 1.21882 0.78560 1.03276 1.02625 1.47249 1.07278 1.04678 1.73661 1.21330 1.00398 0.86755 0.94608 1.21088 0.77782 0.80723 0.91959 1.90676 1.50979 1.53542 1.46061 1.45375 1.57439 1.23380 1.08195 1.21849 1.00118 0.97297 0.84292 0.85317 1.23525 0.91649 1.04030 1.02882 1.21955 1.00027 0.89081 0.98738 1.21687 1.00368 0.98479 0.93184 1.20859 0.96501 0.89710 0.90673 1.43964 1.71198 1.12883 1.03107 1.19156 1.14152 0.86033 1.18933 0.91822 1.25049 0.95734 0.97396 1.01477 1.70024 1.18217 1.34190 1.32184 0.86385 0.79889 0.82831 0.77765 1.21065 1.21664 1.20877 1.20749 0.93619 0.91199 0.89721 1.21806 1.01430 0.97760 0.93337 1.19666 0.87230 0.84307 0.74872 1.90698 1.13933 1.87153 1.49524 1.22185 1.02890 0.90599 1.05653 1.22961 1.03251 1.01472 0.91344 1.22982 1.00162 0.95259 1.00090 0.91944 0.90481 0.90788 0.86804 0.87161 0.76256 0.88538 0.88885 0.91876 0.92909 0.92673 0.96250 0.93596 0.96394 0.89219 0.93764 0.92090 0.85648 0.88241 0.87711 0.87823 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.05 59.85 0.60 1.14 16 2 N -0.60 -6.11 2.36 -182.96 -0.43 -6.55 16 3 C 0.10 0.97 5.93 -5.20 -0.03 0.93 16 4 C 0.50 6.86 7.90 -10.99 -0.09 6.78 16 5 O -0.54 -9.39 16.00 5.55 0.09 -9.30 16 6 N -0.69 -9.11 5.34 -53.89 -0.29 -9.39 16 7 C 0.07 1.05 6.14 -68.01 -0.42 0.64 16 8 H 0.13 2.09 7.40 -51.93 -0.38 1.70 16 9 C -0.18 -2.74 9.86 -26.80 -0.26 -3.00 16 10 C -0.10 -1.59 1.94 -154.50 -0.30 -1.89 16 11 C -0.10 -1.70 5.83 -26.46 -0.15 -1.85 16 12 C 0.15 3.10 6.51 -3.67 -0.02 3.08 16 13 N -0.59 -14.48 2.94 -172.26 -0.51 -14.98 16 14 C -0.25 -6.84 9.54 -15.06 -0.14 -6.99 16 15 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 16 C 0.00 0.06 4.88 -17.43 -0.09 -0.03 16 17 N -0.90 -25.75 11.23 55.49 0.62 -25.13 16 18 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.17 3.98 5.40 -3.68 -0.02 3.96 16 23 C -0.10 -1.86 5.37 -26.46 -0.14 -2.01 16 24 C 0.55 6.61 7.46 -10.99 -0.08 6.53 16 25 O -0.54 -8.43 15.84 5.56 0.09 -8.35 16 26 C -0.19 -1.62 4.79 -91.77 -0.44 -2.06 16 27 C -0.15 -0.96 10.24 -26.69 -0.27 -1.24 16 28 C -0.15 -1.15 10.05 -26.69 -0.27 -1.42 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.36 6.64 -51.92 -0.34 0.01 16 31 H 0.07 0.37 7.89 -51.93 -0.41 -0.04 16 32 H 0.11 1.14 7.42 -51.93 -0.39 0.75 16 33 H 0.11 0.74 7.89 -51.93 -0.41 0.33 16 34 H 0.40 4.47 7.12 -40.82 -0.29 4.17 16 35 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.31 5.93 -51.93 -0.31 2.01 16 44 H 0.04 0.68 6.75 -51.92 -0.35 0.33 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.13 0.84 7.27 -51.93 -0.38 0.47 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.11 1.03 7.67 -51.93 -0.40 0.63 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -34.71 402.14 -9.79 -44.50 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.27 Total: 4.22 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.13 Total: 2.57 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.60 Total: -56.05 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.18 Total: -17.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.71 -9.79 -44.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490596281.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.064 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds