Wall clock time and date at job start Tue Mar 31 2020 18:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00094 * 2 1 4 4 C 1.50700 * 109.47326 * 270.00383 * 3 2 1 5 5 O 1.21284 * 119.99664 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00598 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00501 * 179.97438 * 6 4 3 8 8 H 1.09000 * 115.56506 * 9.28672 * 7 6 4 9 9 C 1.53032 * 117.50303 * 223.58645 * 7 6 4 10 10 C 1.52813 * 117.50609 * 155.00109 * 7 6 4 11 11 C 1.53182 * 117.71408 * 215.10141 * 10 7 6 12 12 C 1.53346 * 108.76543 * 201.11882 * 11 10 7 13 13 N 1.46845 * 108.81631 * 308.68570 * 12 11 10 14 14 C 1.36937 * 120.38271 * 236.88241 * 13 12 11 15 15 H 1.07997 * 120.00335 * 28.90439 * 14 13 12 16 16 C 1.38819 * 119.99803 * 208.90270 * 14 13 12 17 17 N 1.31615 * 119.99973 * 17.85586 * 16 14 13 18 18 Si 1.86800 * 120.00086 * 197.84983 * 16 14 13 19 19 H 1.48501 * 109.46914 * 60.00338 * 18 16 14 20 20 H 1.48495 * 109.46958 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46750 * 300.00379 * 18 16 14 22 22 C 1.46844 * 119.23414 * 56.89473 * 13 12 11 23 23 C 1.53183 * 117.71201 * 359.85737 * 10 7 6 24 24 C 1.34775 * 119.99887 * 179.97438 * 2 1 3 25 25 O 1.21283 * 119.99913 * 179.97438 * 24 2 1 26 26 C 1.50698 * 120.00190 * 0.02562 * 24 2 1 27 27 C 1.53006 * 117.49666 * 248.74427 * 26 24 2 28 28 C 1.53007 * 117.49900 * 180.08716 * 26 24 2 29 29 H 1.08993 * 109.47387 * 90.00200 * 1 2 3 30 30 H 1.09009 * 109.47157 * 210.00351 * 1 2 3 31 31 H 1.09002 * 109.47196 * 329.99812 * 1 2 3 32 32 H 1.08997 * 109.47737 * 149.99625 * 3 2 1 33 33 H 1.09003 * 109.47419 * 30.00057 * 3 2 1 34 34 H 0.97000 * 119.99510 * 359.97438 * 6 4 3 35 35 H 1.09007 * 117.50367 * 145.04452 * 9 7 6 36 36 H 1.09005 * 117.53314 * 359.97438 * 9 7 6 37 37 H 1.09006 * 109.58753 * 81.33219 * 11 10 7 38 38 H 1.08998 * 109.59006 * 320.90353 * 11 10 7 39 39 H 1.09005 * 109.58346 * 188.88842 * 12 11 10 40 40 H 1.09001 * 109.58315 * 68.48677 * 12 11 10 41 41 H 0.97000 * 120.00241 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.57731 * 62.91007 * 22 13 12 43 43 H 1.09001 * 109.57945 * 183.30783 * 22 13 12 44 44 H 1.09007 * 109.58475 * 39.10090 * 23 10 7 45 45 H 1.08994 * 109.59115 * 278.67378 * 23 10 7 46 46 H 1.08997 * 115.55156 * 34.40569 * 26 24 2 47 47 H 1.08999 * 117.49799 * 359.97438 * 27 26 24 48 48 H 1.08994 * 117.50073 * 145.01707 * 27 26 24 49 49 H 1.09002 * 117.49316 * 214.97762 * 28 26 24 50 50 H 1.08997 * 117.49435 * 359.97185 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 8 2.0549 1.0210 -2.3426 6 7 3.1107 2.8515 -1.6672 7 6 3.3553 3.2742 -3.0483 8 1 2.8394 2.6966 -3.8154 9 6 4.7469 3.8137 -3.3864 10 6 3.5553 4.7674 -3.3045 11 6 3.0144 5.3438 -4.6167 12 6 3.7491 6.6554 -4.9192 13 7 3.6870 7.5177 -3.7323 14 6 3.1499 8.7746 -3.8167 15 1 2.3822 8.9859 -4.5464 16 6 3.5921 9.7770 -2.9643 17 7 4.7381 9.6440 -2.3307 18 14 2.5610 11.3148 -2.7166 19 1 1.2334 10.9375 -2.1684 20 1 3.2493 12.2245 -1.7660 21 1 2.3807 12.0049 -4.0192 22 6 4.2077 7.0169 -2.4539 23 6 3.4824 5.7126 -2.1013 24 6 2.1389 -1.1672 0.0005 25 8 3.3517 -1.1672 0.0001 26 6 1.3854 -2.4723 0.0005 27 6 1.4578 -3.3298 1.2656 28 6 2.2075 -3.7627 0.0032 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 3.1499 1.1384 0.5139 33 1 1.6085 2.0284 0.5138 34 1 3.4252 3.3978 -0.9299 35 1 5.1464 3.5910 -4.3759 36 1 5.4807 3.8547 -2.5813 37 1 1.9463 5.5376 -4.5178 38 1 3.1858 4.6339 -5.4258 39 1 3.2702 7.1567 -5.7604 40 1 4.7902 6.4432 -5.1625 41 1 5.0470 10.3443 -1.7348 42 1 5.2772 6.8272 -2.5443 43 1 4.0306 7.7561 -1.6726 44 1 3.9645 5.2474 -1.2414 45 1 2.4396 5.9262 -1.8670 46 1 0.4479 -2.4739 -0.5555 47 1 2.0508 -2.9501 2.0977 48 1 0.5682 -3.8958 1.5416 49 1 1.8107 -4.6133 -0.5509 50 1 3.2933 -3.6676 0.0045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490596281.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:48 Heat of formation + Delta-G solvation = -12.229328 kcal Electronic energy + Delta-G solvation = -29107.970429 eV Core-core repulsion = 25136.819486 eV Total energy + Delta-G solvation = -3971.150943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.58648 -40.79721 -39.63967 -37.32317 -37.02967 -36.42969 -34.59287 -33.29522 -31.75355 -30.45342 -29.58780 -27.57570 -26.23718 -25.01711 -24.06789 -23.34751 -23.22633 -22.45564 -21.51705 -20.05308 -19.80923 -18.70640 -18.48939 -18.24208 -17.57292 -16.86548 -16.79740 -16.32374 -16.10745 -15.70957 -15.48675 -15.43166 -15.24649 -14.94287 -14.63656 -14.54904 -14.18553 -13.89861 -13.75400 -13.55720 -13.42281 -13.27808 -13.06473 -12.95183 -12.92597 -12.55700 -12.51740 -12.44101 -12.33194 -12.00271 -11.78579 -11.57266 -11.44351 -11.38694 -11.32706 -11.22636 -10.97205 -10.72505 -10.48697 -9.79355 -9.69015 -8.61872 -7.85749 -5.31868 1.30950 1.47687 1.48784 1.49504 1.56476 1.77495 2.24023 2.52330 2.89772 2.92344 3.28649 3.48307 3.61689 3.69734 3.80978 3.82029 3.84983 3.96491 3.97024 4.09513 4.12482 4.24615 4.29175 4.33630 4.52311 4.59756 4.67596 4.70570 4.73134 4.84672 4.86438 4.87638 4.92369 4.94032 4.99776 5.01558 5.08601 5.20407 5.21297 5.29212 5.31238 5.36299 5.48448 5.53887 5.66149 5.78765 6.23661 6.41599 6.45969 7.04234 7.16444 7.17215 7.88999 8.40307 9.19163 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024230 B = 0.002113 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.327331 B =13249.209105 C =13663.984940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.597 5.597 3 C 0.096 3.904 4 C 0.497 3.503 5 O -0.577 6.577 6 N -0.688 5.688 7 C 0.086 3.914 8 H 0.121 0.879 9 C -0.176 4.176 10 C -0.110 4.110 11 C -0.087 4.087 12 C 0.146 3.854 13 N -0.608 5.608 14 C -0.264 4.264 15 H 0.063 0.937 16 C -0.049 4.049 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.278 1.278 22 C 0.179 3.821 23 C -0.088 4.088 24 C 0.537 3.463 25 O -0.587 6.587 26 C -0.203 4.203 27 C -0.128 4.128 28 C -0.160 4.160 29 H 0.050 0.950 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.151 0.849 34 H 0.413 0.587 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.015 0.985 41 H 0.250 0.750 42 H -0.003 1.003 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.146 0.854 47 H 0.091 0.909 48 H 0.137 0.863 49 H 0.125 0.875 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.165 -23.834 9.011 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.328 5.328 3 C -0.031 4.031 4 C 0.284 3.716 5 O -0.457 6.457 6 N -0.339 5.339 7 C -0.020 4.020 8 H 0.139 0.861 9 C -0.214 4.214 10 C -0.111 4.111 11 C -0.126 4.126 12 C 0.020 3.980 13 N -0.331 5.331 14 C -0.394 4.394 15 H 0.080 0.920 16 C -0.245 4.245 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.203 1.203 22 C 0.053 3.947 23 C -0.127 4.127 24 C 0.328 3.672 25 O -0.467 6.467 26 C -0.224 4.224 27 C -0.166 4.166 28 C -0.197 4.197 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.168 0.832 34 H 0.251 0.749 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.033 0.967 41 H 0.059 0.941 42 H 0.015 0.985 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.163 0.837 47 H 0.110 0.890 48 H 0.155 0.845 49 H 0.143 0.857 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.773 -24.200 8.474 27.440 hybrid contribution 0.273 1.674 0.028 1.696 sum -9.501 -22.526 8.502 25.884 Atomic orbital electron populations 1.22119 0.76417 1.05669 1.02556 1.47468 1.08694 1.04246 1.72391 1.21485 1.01482 0.87856 0.92243 1.21777 0.76659 0.80073 0.93090 1.90658 1.52674 1.54692 1.47645 1.45348 1.57172 1.23551 1.07792 1.21628 0.99835 0.95330 0.85237 0.86142 1.23606 0.91567 1.02546 1.03713 1.21805 1.01977 0.89667 0.97687 1.21522 0.99377 0.97047 0.94658 1.20974 0.96711 0.90823 0.89463 1.44236 1.71286 1.12838 1.04740 1.19459 1.14007 0.87253 1.18725 0.91952 1.25774 0.96741 1.00289 1.01648 1.70173 1.19690 1.34981 1.32967 0.85381 0.78399 0.79353 0.77549 1.20374 1.21991 1.20347 1.20567 0.92989 0.92711 0.88430 1.21540 1.00440 0.95612 0.95076 1.20380 0.86984 0.85886 0.73969 1.90664 1.16093 1.87996 1.51987 1.22268 1.03296 0.89023 1.07835 1.23066 1.03660 0.99797 0.90036 1.23038 0.98909 0.95773 1.02009 0.93153 0.88052 0.88589 0.86810 0.83178 0.74929 0.87636 0.88304 0.92495 0.90403 0.92914 0.96683 0.94070 0.98498 0.92443 0.90963 0.92707 0.83669 0.89002 0.84527 0.85713 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 10.05 127.77 1.28 2.09 16 2 N -0.60 -11.23 2.36 -851.14 -2.01 -13.24 16 3 C 0.10 1.75 5.93 85.63 0.51 2.25 16 4 C 0.50 12.95 7.90 87.66 0.69 13.65 16 5 O -0.58 -19.83 16.00 -3.04 -0.05 -19.88 16 6 N -0.69 -16.77 5.34 -442.78 -2.37 -19.14 16 7 C 0.09 2.44 6.14 44.94 0.28 2.71 16 8 H 0.12 3.72 7.40 -2.39 -0.02 3.70 16 9 C -0.18 -4.97 9.86 30.55 0.30 -4.67 16 10 C -0.11 -3.47 1.94 -52.17 -0.10 -3.57 16 11 C -0.09 -2.92 5.83 30.77 0.18 -2.74 16 12 C 0.15 6.05 6.51 86.43 0.56 6.62 16 13 N -0.61 -30.25 2.94 -698.91 -2.05 -32.30 16 14 C -0.26 -14.47 9.54 84.04 0.80 -13.66 16 15 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 16 C -0.05 -2.71 4.88 84.86 0.41 -2.30 16 17 N -0.93 -54.49 11.23 21.65 0.24 -54.25 16 18 Si 0.97 44.39 29.59 68.60 2.03 46.42 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C 0.18 8.35 5.40 86.43 0.47 8.82 16 23 C -0.09 -3.06 5.37 30.77 0.17 -2.89 16 24 C 0.54 12.54 7.46 87.66 0.65 13.19 16 25 O -0.59 -18.80 15.84 -3.04 -0.05 -18.85 16 26 C -0.20 -3.10 4.79 -11.54 -0.06 -3.16 16 27 C -0.13 -1.31 10.24 30.62 0.31 -1.00 16 28 C -0.16 -2.32 10.05 30.62 0.31 -2.02 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.60 6.64 -2.38 -0.02 0.59 16 31 H 0.10 0.63 7.89 -2.39 -0.02 0.61 16 32 H 0.11 2.13 7.42 -2.39 -0.02 2.11 16 33 H 0.15 1.48 7.89 -2.39 -0.02 1.46 16 34 H 0.41 8.19 7.12 -92.71 -0.66 7.53 16 35 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 36 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.08 2.22 8.10 -2.39 -0.02 2.21 16 39 H 0.05 2.16 7.92 -2.38 -0.02 2.14 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.06 3.05 5.93 -2.39 -0.01 3.03 16 44 H 0.07 2.08 6.75 -2.38 -0.02 2.07 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.15 1.58 7.27 -2.39 -0.02 1.56 16 47 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.08 1.63 7.67 -2.39 -0.02 1.61 16 Total: -1.00 -78.24 402.14 2.80 -75.44 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.28 Total: 22.46 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.77 Total: 13.33 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -6.19 Total: -118.93 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.10 Total: -38.73 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -78.24 2.80 -75.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490596281.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.212 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds