Wall clock time and date at job start Tue Mar 31 2020 18:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99871 * 2 1 4 4 C 1.50699 * 109.46908 * 269.99496 * 3 2 1 5 5 O 1.21279 * 120.00232 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99893 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99982 * 180.02562 * 6 4 3 8 8 H 1.08996 * 115.54774 * 350.70182 * 7 6 4 9 9 C 1.53022 * 117.50251 * 136.39248 * 7 6 4 10 10 C 1.52821 * 117.50227 * 204.97618 * 7 6 4 11 11 C 1.53180 * 117.71444 * 144.89792 * 10 7 6 12 12 C 1.53352 * 108.77028 * 158.89252 * 11 10 7 13 13 N 1.46839 * 108.81615 * 51.30255 * 12 11 10 14 14 C 1.36943 * 120.38103 * 123.08199 * 13 12 11 15 15 H 1.07998 * 119.99633 * 208.95186 * 14 13 12 16 16 C 1.38807 * 119.99933 * 28.95527 * 14 13 12 17 17 N 1.31620 * 120.00315 * 17.85640 * 16 14 13 18 18 Si 1.86799 * 119.99906 * 197.85833 * 16 14 13 19 19 H 1.48496 * 109.47182 * 59.99855 * 18 16 14 20 20 H 1.48509 * 109.47102 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46772 * 299.99532 * 18 16 14 22 22 C 1.46850 * 119.23756 * 303.09936 * 13 12 11 23 23 C 1.53187 * 117.71247 * 0.13602 * 10 7 6 24 24 C 1.34783 * 120.00020 * 179.97438 * 2 1 3 25 25 O 1.21281 * 120.00172 * 179.97438 * 24 2 1 26 26 C 1.50702 * 119.99790 * 0.02562 * 24 2 1 27 27 C 1.52993 * 117.49585 * 179.97438 * 26 24 2 28 28 C 1.53001 * 117.50102 * 111.37475 * 26 24 2 29 29 H 1.08997 * 109.47210 * 270.00301 * 1 2 3 30 30 H 1.08999 * 109.47187 * 29.99768 * 1 2 3 31 31 H 1.09005 * 109.47314 * 150.00113 * 1 2 3 32 32 H 1.08994 * 109.47605 * 29.99806 * 3 2 1 33 33 H 1.09008 * 109.46843 * 150.00265 * 3 2 1 34 34 H 0.97002 * 120.00065 * 0.02562 * 6 4 3 35 35 H 1.09002 * 117.50413 * 214.95441 * 9 7 6 36 36 H 1.09004 * 117.50878 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.58437 * 278.67011 * 11 10 7 38 38 H 1.08992 * 109.58830 * 39.10296 * 11 10 7 39 39 H 1.09004 * 109.57675 * 291.50858 * 12 11 10 40 40 H 1.08990 * 109.69237 * 171.17257 * 12 11 10 41 41 H 0.96999 * 120.00334 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.58306 * 297.11313 * 22 13 12 43 43 H 1.08997 * 109.58263 * 176.70585 * 22 13 12 44 44 H 1.09000 * 109.58742 * 320.90562 * 23 10 7 45 45 H 1.09003 * 109.58579 * 81.19013 * 23 10 7 46 46 H 1.09000 * 115.56126 * 325.68656 * 26 24 2 47 47 H 1.09007 * 117.49591 * 145.02267 * 27 26 24 48 48 H 1.08995 * 117.50450 * 359.97438 * 27 26 24 49 49 H 1.09003 * 117.49352 * 0.02562 * 28 26 24 50 50 H 1.08996 * 117.50139 * 214.97673 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0543 1.0213 -2.3426 6 7 3.1117 2.8510 -1.6671 7 6 3.3554 3.2741 -3.0484 8 1 3.1132 2.5382 -3.8151 9 6 3.1263 4.7488 -3.3866 10 6 4.5483 4.1944 -3.3045 11 6 5.3182 4.0143 -4.6164 12 6 6.0866 5.3065 -4.9189 13 7 6.8640 5.6842 -3.7319 14 6 8.2211 5.8470 -3.8157 15 1 8.8417 5.6607 -2.9517 16 6 8.7991 6.2516 -5.0111 17 7 8.0583 6.8112 -5.9441 18 14 10.6282 6.0018 -5.2958 19 1 10.9488 4.5542 -5.2142 20 1 10.9947 6.5155 -6.6402 21 1 11.3955 6.7380 -4.2592 22 6 6.1694 5.8850 -2.4537 23 6 5.4029 4.6044 -2.1011 24 6 2.1389 -1.1673 0.0005 25 8 3.3517 -1.1673 0.0001 26 6 1.3854 -2.4723 0.0005 27 6 2.2074 -3.7626 0.0005 28 6 1.4609 -3.3318 -1.2630 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1500 1.1384 0.5138 34 1 3.4274 3.3965 -0.9298 35 1 2.7338 4.9832 -4.3761 36 1 2.7938 5.4042 -2.5815 37 1 6.0203 3.1864 -4.5174 38 1 4.6180 3.8076 -5.4256 39 1 5.3821 6.1019 -5.1625 40 1 6.7601 5.1448 -5.7604 41 1 8.4622 7.0942 -6.7793 42 1 5.4700 6.7160 -2.5445 43 1 6.8977 6.1016 -1.6722 44 1 4.7588 4.7890 -1.2414 45 1 6.1079 3.8073 -1.8650 46 1 0.4466 -2.4734 0.5545 47 1 1.8097 -4.6128 0.5548 48 1 3.2932 -3.6677 0.0001 49 1 2.0561 -2.9534 -2.0942 50 1 0.5720 -3.8983 -1.5403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490596282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:53 Heat of formation + Delta-G solvation = 10.207801 kcal Electronic energy + Delta-G solvation = -29212.154541 eV Core-core repulsion = 25241.976545 eV Total energy + Delta-G solvation = -3970.177996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.66931 -39.68064 -38.36610 -36.52748 -35.69857 -35.35972 -33.16965 -31.61910 -30.07776 -29.37101 -28.15727 -26.92308 -24.35525 -24.21320 -22.73892 -22.46680 -22.02434 -20.93803 -20.36642 -19.25591 -18.22126 -17.84454 -17.51157 -16.77344 -16.36565 -15.79836 -15.56108 -15.16531 -14.79772 -14.69693 -14.34351 -14.03336 -13.80177 -13.49956 -13.34033 -13.24531 -13.10595 -12.94678 -12.75565 -12.59834 -12.26478 -12.21674 -11.84819 -11.63935 -11.56891 -11.30417 -10.94937 -10.93319 -10.83455 -10.70344 -10.44024 -10.32561 -10.22390 -10.09067 -9.94191 -9.68026 -9.63819 -9.37130 -8.95464 -8.45172 -8.43023 -6.62689 -5.77441 -3.20623 2.17161 2.48287 2.52848 3.20425 3.39877 3.45682 3.47687 3.56255 4.12648 4.19785 4.45023 4.51329 4.55445 4.61620 4.69779 4.76757 4.79807 4.98963 5.01768 5.13780 5.15607 5.16953 5.29442 5.33970 5.40443 5.40685 5.50498 5.64629 5.65310 5.82336 5.86249 5.99164 6.05816 6.09144 6.10480 6.30306 6.45162 6.57789 6.62832 6.66533 6.71267 6.84733 6.97653 6.98406 7.38063 7.46753 7.68705 7.80992 7.89063 8.18174 8.48184 9.23321 9.86938 10.43459 11.30316 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.002256 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.300615 B =12409.911037 C =13062.763639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.096 3.904 4 C 0.499 3.501 5 O -0.534 6.534 6 N -0.694 5.694 7 C 0.069 3.931 8 H 0.130 0.870 9 C -0.182 4.182 10 C -0.096 4.096 11 C -0.106 4.106 12 C 0.173 3.827 13 N -0.589 5.589 14 C -0.254 4.254 15 H 0.064 0.936 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.150 3.850 23 C -0.097 4.097 24 C 0.550 3.450 25 O -0.534 6.534 26 C -0.194 4.194 27 C -0.149 4.149 28 C -0.149 4.149 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.401 0.599 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.018 0.982 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.124 0.876 47 H 0.103 0.897 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.320 -14.195 13.800 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C -0.031 4.031 4 C 0.283 3.717 5 O -0.410 6.410 6 N -0.344 5.344 7 C -0.036 4.036 8 H 0.148 0.852 9 C -0.220 4.220 10 C -0.097 4.097 11 C -0.145 4.145 12 C 0.047 3.953 13 N -0.311 5.311 14 C -0.384 4.384 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.023 3.977 23 C -0.137 4.137 24 C 0.338 3.662 25 O -0.410 6.410 26 C -0.215 4.215 27 C -0.186 4.186 28 C -0.187 4.187 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.236 0.764 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.142 0.858 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.120 0.880 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.908 -14.620 12.987 27.202 hybrid contribution 0.820 0.425 0.118 0.931 sum -18.089 -14.195 13.105 26.466 Atomic orbital electron populations 1.21815 0.78657 1.03991 1.01511 1.47254 1.07191 1.04674 1.73921 1.21303 1.00395 0.86809 0.94558 1.21096 0.77842 0.80754 0.91973 1.90684 1.50871 1.53431 1.46036 1.45378 1.57189 1.23728 1.08153 1.21881 1.04545 0.92982 0.84212 0.85243 1.23523 1.00204 0.95469 1.02837 1.21950 0.88744 1.00186 0.98823 1.21877 0.98135 1.01998 0.92514 1.20761 0.93286 0.90089 0.91144 1.43965 1.03852 1.79060 1.04270 1.19141 0.82108 1.39407 0.97703 0.91859 1.25044 0.97742 0.98250 0.98550 1.70022 1.35055 1.41713 1.07780 0.86389 0.85351 0.78096 0.77059 1.21003 1.21642 1.20887 1.20835 0.94356 0.92679 0.89785 1.21630 0.97624 1.00745 0.93658 1.19711 0.87277 0.84329 0.74869 1.90716 1.13913 1.87101 1.49229 1.22153 1.02574 0.90543 1.06231 1.22969 1.00191 0.95030 1.00429 1.22947 1.03229 1.00948 0.91536 0.92333 0.90887 0.90498 0.87338 0.86719 0.76428 0.88400 0.89079 0.92123 0.93075 0.96383 0.89168 0.93579 0.96324 0.92730 0.93661 0.91729 0.85790 0.87867 0.87380 0.88003 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.01 59.85 0.60 1.12 16 2 N -0.60 -5.97 2.36 -182.95 -0.43 -6.40 16 3 C 0.10 0.92 5.89 -5.19 -0.03 0.89 16 4 C 0.50 6.63 7.90 -10.99 -0.09 6.55 16 5 O -0.53 -9.20 16.00 5.56 0.09 -9.11 16 6 N -0.69 -8.72 5.35 -53.88 -0.29 -9.01 16 7 C 0.07 1.04 6.14 -68.01 -0.42 0.62 16 8 H 0.13 2.16 7.40 -51.93 -0.38 1.77 16 9 C -0.18 -2.63 9.86 -26.80 -0.26 -2.89 16 10 C -0.10 -1.60 1.94 -154.49 -0.30 -1.90 16 11 C -0.11 -2.07 5.83 -26.46 -0.15 -2.22 16 12 C 0.17 4.13 5.41 -3.68 -0.02 4.11 16 13 N -0.59 -14.71 2.94 -172.26 -0.51 -15.22 16 14 C -0.25 -6.98 9.54 -15.06 -0.14 -7.13 16 15 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 16 C 0.00 0.08 4.88 -17.43 -0.09 -0.01 16 17 N -0.90 -26.20 11.23 55.49 0.62 -25.58 16 18 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.15 3.09 6.52 -3.67 -0.02 3.06 16 23 C -0.10 -1.63 5.37 -26.45 -0.14 -1.77 16 24 C 0.55 6.66 7.46 -10.98 -0.08 6.57 16 25 O -0.53 -8.61 15.84 5.56 0.09 -8.52 16 26 C -0.19 -1.66 4.80 -91.77 -0.44 -2.10 16 27 C -0.15 -1.20 10.04 -26.76 -0.27 -1.47 16 28 C -0.15 -1.22 10.23 -26.75 -0.27 -1.49 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.08 0.43 6.64 -51.93 -0.34 0.09 16 32 H 0.11 0.62 8.07 -51.93 -0.42 0.20 16 33 H 0.11 1.14 7.42 -51.92 -0.39 0.76 16 34 H 0.40 4.06 7.12 -40.82 -0.29 3.77 16 35 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 2.42 5.93 -51.93 -0.31 2.11 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 44 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.12 0.70 7.26 -51.93 -0.38 0.32 16 47 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 48 H 0.11 1.08 7.67 -51.93 -0.40 0.69 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -35.31 402.40 -9.81 -45.12 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.29 Total: 3.88 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -2.13 Total: 1.95 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.60 Total: -56.20 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.18 Total: -17.64 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.31 -9.81 -45.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490596282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.331 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds