Wall clock time and date at job start Tue Mar 31 2020 18:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99871 * 2 1 4 4 C 1.50699 * 109.46908 * 269.99496 * 3 2 1 5 5 O 1.21279 * 120.00232 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99893 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99982 * 180.02562 * 6 4 3 8 8 H 1.08996 * 115.54774 * 350.70182 * 7 6 4 9 9 C 1.53022 * 117.50251 * 136.39248 * 7 6 4 10 10 C 1.52821 * 117.50227 * 204.97618 * 7 6 4 11 11 C 1.53180 * 117.71444 * 144.89792 * 10 7 6 12 12 C 1.53352 * 108.77028 * 158.89252 * 11 10 7 13 13 N 1.46839 * 108.81615 * 51.30255 * 12 11 10 14 14 C 1.36943 * 120.38103 * 123.08199 * 13 12 11 15 15 H 1.07998 * 119.99633 * 208.95186 * 14 13 12 16 16 C 1.38807 * 119.99933 * 28.95527 * 14 13 12 17 17 N 1.31620 * 120.00315 * 17.85640 * 16 14 13 18 18 Si 1.86799 * 119.99906 * 197.85833 * 16 14 13 19 19 H 1.48496 * 109.47182 * 59.99855 * 18 16 14 20 20 H 1.48509 * 109.47102 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46772 * 299.99532 * 18 16 14 22 22 C 1.46850 * 119.23756 * 303.09936 * 13 12 11 23 23 C 1.53187 * 117.71247 * 0.13602 * 10 7 6 24 24 C 1.34783 * 120.00020 * 179.97438 * 2 1 3 25 25 O 1.21281 * 120.00172 * 179.97438 * 24 2 1 26 26 C 1.50702 * 119.99790 * 0.02562 * 24 2 1 27 27 C 1.52993 * 117.49585 * 179.97438 * 26 24 2 28 28 C 1.53001 * 117.50102 * 111.37475 * 26 24 2 29 29 H 1.08997 * 109.47210 * 270.00301 * 1 2 3 30 30 H 1.08999 * 109.47187 * 29.99768 * 1 2 3 31 31 H 1.09005 * 109.47314 * 150.00113 * 1 2 3 32 32 H 1.08994 * 109.47605 * 29.99806 * 3 2 1 33 33 H 1.09008 * 109.46843 * 150.00265 * 3 2 1 34 34 H 0.97002 * 120.00065 * 0.02562 * 6 4 3 35 35 H 1.09002 * 117.50413 * 214.95441 * 9 7 6 36 36 H 1.09004 * 117.50878 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.58437 * 278.67011 * 11 10 7 38 38 H 1.08992 * 109.58830 * 39.10296 * 11 10 7 39 39 H 1.09004 * 109.57675 * 291.50858 * 12 11 10 40 40 H 1.08990 * 109.69237 * 171.17257 * 12 11 10 41 41 H 0.96999 * 120.00334 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.58306 * 297.11313 * 22 13 12 43 43 H 1.08997 * 109.58263 * 176.70585 * 22 13 12 44 44 H 1.09000 * 109.58742 * 320.90562 * 23 10 7 45 45 H 1.09003 * 109.58579 * 81.19013 * 23 10 7 46 46 H 1.09000 * 115.56126 * 325.68656 * 26 24 2 47 47 H 1.09007 * 117.49591 * 145.02267 * 27 26 24 48 48 H 1.08995 * 117.50450 * 359.97438 * 27 26 24 49 49 H 1.09003 * 117.49352 * 0.02562 * 28 26 24 50 50 H 1.08996 * 117.50139 * 214.97673 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0543 1.0213 -2.3426 6 7 3.1117 2.8510 -1.6671 7 6 3.3554 3.2741 -3.0484 8 1 3.1132 2.5382 -3.8151 9 6 3.1263 4.7488 -3.3866 10 6 4.5483 4.1944 -3.3045 11 6 5.3182 4.0143 -4.6164 12 6 6.0866 5.3065 -4.9189 13 7 6.8640 5.6842 -3.7319 14 6 8.2211 5.8470 -3.8157 15 1 8.8417 5.6607 -2.9517 16 6 8.7991 6.2516 -5.0111 17 7 8.0583 6.8112 -5.9441 18 14 10.6282 6.0018 -5.2958 19 1 10.9488 4.5542 -5.2142 20 1 10.9947 6.5155 -6.6402 21 1 11.3955 6.7380 -4.2592 22 6 6.1694 5.8850 -2.4537 23 6 5.4029 4.6044 -2.1011 24 6 2.1389 -1.1673 0.0005 25 8 3.3517 -1.1673 0.0001 26 6 1.3854 -2.4723 0.0005 27 6 2.2074 -3.7626 0.0005 28 6 1.4609 -3.3318 -1.2630 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1500 1.1384 0.5138 34 1 3.4274 3.3965 -0.9298 35 1 2.7338 4.9832 -4.3761 36 1 2.7938 5.4042 -2.5815 37 1 6.0203 3.1864 -4.5174 38 1 4.6180 3.8076 -5.4256 39 1 5.3821 6.1019 -5.1625 40 1 6.7601 5.1448 -5.7604 41 1 8.4622 7.0942 -6.7793 42 1 5.4700 6.7160 -2.5445 43 1 6.8977 6.1016 -1.6722 44 1 4.7588 4.7890 -1.2414 45 1 6.1079 3.8073 -1.8650 46 1 0.4466 -2.4734 0.5545 47 1 1.8097 -4.6128 0.5548 48 1 3.2932 -3.6677 0.0001 49 1 2.0561 -2.9534 -2.0942 50 1 0.5720 -3.8983 -1.5403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490596282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:52 Heat of formation + Delta-G solvation = -12.653897 kcal Electronic energy + Delta-G solvation = -29213.145899 eV Core-core repulsion = 25241.976545 eV Total energy + Delta-G solvation = -3971.169354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58472 -40.79892 -39.64088 -37.33687 -37.05040 -36.42818 -34.54600 -33.40009 -31.71609 -30.43103 -29.62281 -27.56919 -26.25566 -25.02124 -24.08804 -23.37477 -23.20141 -22.46541 -21.54634 -20.05436 -19.80457 -18.66387 -18.58981 -18.15526 -17.61643 -16.94582 -16.68950 -16.38471 -16.11637 -15.73899 -15.49137 -15.34150 -15.15660 -14.98329 -14.74116 -14.62355 -14.18885 -13.86188 -13.79225 -13.57842 -13.41046 -13.27185 -13.12670 -12.94427 -12.88560 -12.58125 -12.52499 -12.47081 -12.30266 -12.04370 -11.80528 -11.55962 -11.46343 -11.41403 -11.33421 -11.22587 -10.98256 -10.75116 -10.48933 -9.76788 -9.68834 -8.63447 -7.87657 -5.33668 1.31080 1.44449 1.47561 1.50477 1.53917 1.75691 2.25242 2.50164 2.90671 2.92505 3.26988 3.49144 3.60832 3.70260 3.79378 3.83010 3.85609 3.94723 3.97498 4.09957 4.11488 4.20509 4.27028 4.35210 4.50373 4.58927 4.70756 4.70845 4.73748 4.82201 4.85665 4.89157 4.92620 4.94561 4.99884 5.01065 5.05931 5.15127 5.19064 5.29057 5.33310 5.36224 5.48436 5.54425 5.64005 5.75343 6.24266 6.39993 6.47980 7.05504 7.15088 7.18826 7.87736 8.38402 9.17301 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.002256 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.300615 B =12409.911037 C =13062.763639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.598 5.598 3 C 0.097 3.903 4 C 0.495 3.505 5 O -0.579 6.579 6 N -0.684 5.684 7 C 0.084 3.916 8 H 0.111 0.889 9 C -0.161 4.161 10 C -0.118 4.118 11 C -0.095 4.095 12 C 0.182 3.818 13 N -0.609 5.609 14 C -0.264 4.264 15 H 0.064 0.936 16 C -0.050 4.050 17 N -0.932 5.932 18 Si 0.963 3.037 19 H -0.282 1.282 20 H -0.293 1.293 21 H -0.273 1.273 22 C 0.145 3.855 23 C -0.083 4.083 24 C 0.534 3.466 25 O -0.589 6.589 26 C -0.193 4.193 27 C -0.150 4.150 28 C -0.149 4.149 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.111 0.889 34 H 0.415 0.585 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.002 0.998 40 H 0.052 0.948 41 H 0.250 0.750 42 H 0.022 0.978 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.162 0.838 47 H 0.135 0.865 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.900 -14.778 16.414 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C -0.029 4.029 4 C 0.282 3.718 5 O -0.458 6.458 6 N -0.336 5.336 7 C -0.023 4.023 8 H 0.128 0.872 9 C -0.199 4.199 10 C -0.120 4.120 11 C -0.134 4.134 12 C 0.056 3.944 13 N -0.332 5.332 14 C -0.394 4.394 15 H 0.081 0.919 16 C -0.246 4.246 17 N -0.578 5.578 18 Si 0.792 3.208 19 H -0.209 1.209 20 H -0.219 1.219 21 H -0.199 1.199 22 C 0.020 3.980 23 C -0.122 4.122 24 C 0.325 3.675 25 O -0.469 6.469 26 C -0.214 4.214 27 C -0.187 4.187 28 C -0.186 4.186 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.174 0.826 33 H 0.129 0.871 34 H 0.253 0.747 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.020 0.980 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.179 0.821 47 H 0.153 0.847 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.532 -15.182 15.657 30.647 hybrid contribution 1.584 0.626 -0.694 1.839 sum -19.948 -14.556 14.963 28.873 Atomic orbital electron populations 1.22098 0.76223 1.04499 1.03728 1.47479 1.08781 1.04187 1.72419 1.21474 1.01425 0.87959 0.92065 1.21829 0.76785 0.80058 0.93134 1.90669 1.52732 1.54646 1.47734 1.45287 1.56855 1.23894 1.07524 1.21558 1.02478 0.92986 0.85271 0.87153 1.23595 0.97248 0.95186 1.03876 1.21802 0.89720 1.03164 0.97305 1.21627 0.97948 0.98743 0.95118 1.20510 0.92350 0.91516 0.90034 1.44231 1.03553 1.79520 1.05926 1.19461 0.83703 1.38486 0.97779 0.91862 1.25774 1.01666 0.98587 0.98536 1.70166 1.36556 1.43092 1.08001 0.85403 0.80816 0.77841 0.76784 1.20879 1.21914 1.19876 1.21011 0.94500 0.94747 0.87755 1.21450 0.97589 0.98014 0.95106 1.20440 0.86990 0.86075 0.74034 1.90682 1.16306 1.88019 1.51921 1.22310 1.03545 0.88796 1.06741 1.23016 0.98754 0.96101 1.00860 1.22973 1.03983 1.01141 0.90541 0.89119 0.90635 0.89892 0.82560 0.87109 0.74664 0.88244 0.86628 0.93999 0.91702 0.97954 0.92936 0.94093 0.96036 0.92707 0.89245 0.93125 0.82090 0.84732 0.90277 0.91200 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.01 127.77 1.28 1.97 16 2 N -0.60 -10.65 2.36 -851.12 -2.01 -12.66 16 3 C 0.10 1.63 5.89 85.63 0.50 2.13 16 4 C 0.50 12.35 7.90 87.66 0.69 13.04 16 5 O -0.58 -19.68 16.00 -3.03 -0.05 -19.72 16 6 N -0.68 -15.50 5.35 -442.78 -2.37 -17.87 16 7 C 0.08 2.36 6.14 44.94 0.28 2.64 16 8 H 0.11 3.63 7.40 -2.39 -0.02 3.62 16 9 C -0.16 -4.22 9.86 30.55 0.30 -3.92 16 10 C -0.12 -3.82 1.94 -52.17 -0.10 -3.92 16 11 C -0.10 -3.78 5.83 30.77 0.18 -3.61 16 12 C 0.18 8.97 5.41 86.43 0.47 9.44 16 13 N -0.61 -30.96 2.94 -698.91 -2.05 -33.01 16 14 C -0.26 -14.80 9.54 84.03 0.80 -14.00 16 15 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 16 C -0.05 -2.85 4.88 84.86 0.41 -2.44 16 17 N -0.93 -56.00 11.23 21.65 0.24 -55.76 16 18 Si 0.96 45.89 29.59 68.60 2.03 47.92 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 22 C 0.15 5.85 6.52 86.43 0.56 6.42 16 23 C -0.08 -2.61 5.37 30.77 0.17 -2.45 16 24 C 0.53 12.56 7.46 87.66 0.65 13.21 16 25 O -0.59 -19.55 15.84 -3.03 -0.05 -19.60 16 26 C -0.19 -2.95 4.80 -11.54 -0.06 -3.01 16 27 C -0.15 -2.28 10.04 30.58 0.31 -1.97 16 28 C -0.15 -2.27 10.23 30.58 0.31 -1.96 16 29 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.68 8.07 -2.39 -0.02 0.66 16 31 H 0.08 0.67 6.64 -2.38 -0.02 0.65 16 32 H 0.16 1.08 8.07 -2.39 -0.02 1.06 16 33 H 0.11 2.02 7.42 -2.38 -0.02 2.00 16 34 H 0.42 6.88 7.12 -92.71 -0.66 6.22 16 35 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.12 2.51 8.14 -2.38 -0.02 2.50 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 2.35 8.10 -2.39 -0.02 2.33 16 39 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 40 H 0.05 2.97 5.93 -2.39 -0.01 2.95 16 41 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 2.16 7.92 -2.39 -0.02 2.15 16 44 H 0.09 2.04 6.75 -2.39 -0.02 2.02 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.16 1.19 7.26 -2.39 -0.02 1.17 16 47 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.08 1.67 7.67 -2.39 -0.02 1.66 16 49 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -82.20 402.40 2.79 -79.42 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.28 Total: 19.73 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 6.76 Total: 11.57 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -6.19 Total: -119.30 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.10 Total: -39.33 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -82.20 2.79 -79.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490596282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.764 kcal (2) G-P(sol) polarization free energy of solvation -82.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds