Wall clock time and date at job start Tue Mar 31 2020 18:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34774 * 120.00610 * 2 1 4 4 O 1.21283 * 120.00485 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.99469 * 0.26980 * 3 2 1 6 6 H 1.09000 * 115.56009 * 325.46146 * 5 3 2 7 7 C 1.53121 * 117.50803 * 111.26597 * 5 3 2 8 8 C 1.52461 * 117.51065 * 179.72860 * 5 3 2 9 9 C 1.53251 * 128.58615 * 134.95212 * 8 5 3 10 10 C 1.53890 * 86.88408 * 194.88286 * 9 8 5 11 11 C 1.53254 * 128.58554 * 10.14827 * 8 5 3 12 12 C 1.46504 * 119.99970 * 179.97438 * 2 1 3 13 13 H 1.08996 * 110.28979 * 180.67802 * 12 2 1 14 14 C 1.54259 * 110.32198 * 58.54630 * 12 2 1 15 15 C 1.54378 * 105.06457 * 241.10473 * 14 12 2 16 16 N 1.48560 * 104.59319 * 23.85377 * 15 14 12 17 17 C 1.46894 * 111.00292 * 200.96092 * 16 15 14 18 18 C 1.50706 * 109.47332 * 176.49207 * 17 16 15 19 19 O 1.21290 * 119.99878 * 6.05252 * 18 17 16 20 20 N 1.34773 * 119.99891 * 186.06138 * 18 17 16 21 21 C 1.37099 * 119.99834 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00026 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99726 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99550 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00288 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47367 * 89.99703 * 25 23 21 27 27 H 1.48500 * 109.47168 * 209.99754 * 25 23 21 28 28 H 1.48499 * 109.47062 * 329.99456 * 25 23 21 29 29 C 1.48560 * 104.22445 * 320.51818 * 16 15 14 30 30 H 1.09011 * 109.47076 * 90.00069 * 1 2 3 31 31 H 1.08999 * 109.47698 * 209.99940 * 1 2 3 32 32 H 1.08995 * 109.47409 * 330.00812 * 1 2 3 33 33 H 1.09005 * 117.51085 * 214.89473 * 7 5 3 34 34 H 1.08995 * 117.51954 * 0.02562 * 7 5 3 35 35 H 1.08997 * 113.64635 * 309.38639 * 9 8 5 36 36 H 1.09003 * 113.64489 * 80.38685 * 9 8 5 37 37 H 1.08992 * 113.59372 * 270.39123 * 10 9 8 38 38 H 1.09006 * 113.65667 * 139.57710 * 10 9 8 39 39 H 1.08993 * 113.64898 * 279.61055 * 11 8 5 40 40 H 1.08994 * 113.64480 * 50.53024 * 11 8 5 41 41 H 1.09001 * 110.32726 * 0.02562 * 14 12 2 42 42 H 1.09004 * 110.32648 * 122.20946 * 14 12 2 43 43 H 1.09000 * 110.41745 * 142.62863 * 15 14 12 44 44 H 1.08999 * 110.41631 * 264.96238 * 15 14 12 45 45 H 1.09003 * 109.46956 * 296.48953 * 17 16 15 46 46 H 1.09001 * 109.47303 * 56.48638 * 17 16 15 47 47 H 0.97008 * 120.00227 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00065 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.41271 * 280.70619 * 29 16 15 50 50 H 1.08998 * 110.41792 * 158.25685 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3854 2.4723 0.0061 6 1 0.4465 2.4759 -0.5475 7 6 1.4636 3.3281 1.2735 8 6 2.2044 3.7582 0.0122 9 6 2.0040 5.0231 -0.8296 10 6 3.4260 5.4298 -0.4047 11 6 3.7125 3.9320 -0.1980 12 6 2.1974 -1.2688 0.0006 13 1 3.2717 -1.0850 0.0126 14 6 1.8116 -2.1107 -1.2331 15 6 1.1978 -3.4057 -0.6590 16 7 0.7228 -3.0259 0.6964 17 6 0.5711 -4.2102 1.5521 18 6 0.1721 -3.7794 2.9400 19 8 -0.0787 -2.6142 3.1647 20 7 0.0940 -4.6889 3.9316 21 6 -0.2685 -4.2969 5.1943 22 1 -0.4911 -3.2592 5.3946 23 6 -0.3495 -5.2347 6.2165 24 7 -0.6964 -4.8588 7.4270 25 14 0.0363 -7.0293 5.8703 26 1 1.4832 -7.2768 6.0943 27 1 -0.7600 -7.8912 6.7803 28 1 -0.3079 -7.3466 4.4610 29 6 1.7842 -2.1259 1.2163 30 1 -0.3634 0.0000 -1.0278 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 0.5756 3.8948 1.5539 34 1 2.0602 2.9472 2.1023 35 1 1.9059 4.8267 -1.8972 36 1 1.2271 5.6847 -0.4463 37 1 3.4565 6.0110 0.5169 38 1 4.0107 5.8789 -1.2076 39 1 4.3053 3.7191 0.6915 40 1 4.0902 3.4307 -1.0890 41 1 1.0776 -1.5798 -1.8393 42 1 2.6968 -2.3417 -1.8257 43 1 0.3622 -3.7363 -1.2758 44 1 1.9538 -4.1882 -0.5934 45 1 -0.1990 -4.8612 1.1383 46 1 1.5172 -4.7497 1.5970 47 1 0.2943 -5.6209 3.7518 48 1 -0.7526 -5.5133 8.1406 49 1 2.6326 -2.7074 1.5773 50 1 1.3902 -1.4929 2.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494851434.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:48 Heat of formation + Delta-G solvation = 3.769096 kcal Electronic energy + Delta-G solvation = -29576.454706 eV Core-core repulsion = 25605.997506 eV Total energy + Delta-G solvation = -3970.457199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64955 -39.54426 -38.45943 -37.46467 -34.97242 -33.99169 -33.76996 -31.76056 -31.28423 -28.67941 -27.14070 -26.37887 -25.83098 -24.49644 -23.78701 -23.22004 -21.19154 -20.68698 -19.41404 -19.02987 -18.32031 -18.21976 -17.39458 -16.47533 -15.78376 -15.61473 -15.42750 -15.35957 -15.27661 -14.84681 -14.75803 -14.27330 -13.79216 -13.44475 -13.21312 -12.83861 -12.72916 -12.50356 -12.48558 -12.40681 -12.18707 -12.05501 -11.99408 -11.84681 -11.79354 -11.67545 -11.57176 -11.40498 -11.30783 -10.99552 -10.81962 -10.61410 -10.49105 -10.22961 -9.99978 -9.87446 -9.57933 -9.56060 -8.69041 -8.50045 -8.22568 -8.14080 -6.33436 -3.84841 2.51196 2.97803 3.00428 3.04717 3.13212 3.63941 3.70654 3.99116 4.08293 4.16241 4.44876 4.50649 4.61291 4.62646 4.67186 4.72862 4.89074 4.91741 5.07296 5.19350 5.19664 5.34743 5.38036 5.39862 5.46188 5.53492 5.56474 5.57328 5.60411 5.62806 5.67360 5.69736 5.71987 5.82352 5.83884 5.87329 5.92749 6.00662 6.02936 6.14570 6.20294 6.23990 6.38324 6.65817 6.97806 7.06160 7.49643 7.55636 8.11713 8.25263 8.57294 8.92617 9.39841 9.80040 10.79614 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.002513 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.847119 B =11140.629089 C =12167.232144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.595 5.595 3 C 0.544 3.456 4 O -0.544 6.544 5 C -0.176 4.176 6 H 0.122 0.878 7 C -0.119 4.119 8 C -0.129 4.129 9 C -0.099 4.099 10 C -0.142 4.142 11 C -0.082 4.082 12 C 0.136 3.864 13 H 0.103 0.897 14 C -0.132 4.132 15 C 0.029 3.971 16 N -0.485 5.485 17 C 0.031 3.969 18 C 0.451 3.549 19 O -0.560 6.560 20 N -0.590 5.590 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.025 3.975 30 H 0.047 0.953 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.047 0.953 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 10.946 -19.723 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.327 5.327 3 C 0.333 3.667 4 O -0.422 6.422 5 C -0.197 4.197 6 H 0.140 0.860 7 C -0.156 4.156 8 C -0.130 4.130 9 C -0.136 4.136 10 C -0.180 4.180 11 C -0.119 4.119 12 C 0.032 3.968 13 H 0.121 0.879 14 C -0.171 4.171 15 C -0.099 4.099 16 N -0.209 5.209 17 C -0.101 4.101 18 C 0.237 3.763 19 O -0.442 6.442 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.104 4.104 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.065 0.935 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.781 11.921 -19.337 23.214 hybrid contribution 0.718 -2.288 -0.007 2.398 sum 5.499 9.632 -19.344 22.299 Atomic orbital electron populations 1.21919 0.78675 1.05163 1.01222 1.47732 1.07500 1.04919 1.72554 1.19685 0.87261 0.84299 0.75474 1.90649 1.13826 1.87277 1.50462 1.22147 1.01995 0.90266 1.05316 0.86008 1.22801 1.02069 1.00184 0.90590 1.22293 0.96479 0.93582 1.00613 1.22495 0.97616 0.94314 0.99149 1.22813 0.96613 0.97060 1.01486 1.22304 0.92743 0.94370 1.02488 1.21836 0.97327 0.83010 0.94618 0.87863 1.22674 1.01023 0.95849 0.97509 1.23173 0.98785 0.96338 0.91616 1.65205 1.41257 1.13485 1.00990 1.22117 1.01062 0.92964 0.93929 1.19598 0.84624 0.86754 0.85324 1.90529 1.53098 1.17711 1.82881 1.42218 1.62553 1.08551 1.09655 1.19414 1.43139 0.98206 0.82501 0.86271 1.25043 0.97557 0.98443 0.95133 1.69621 1.46796 1.34907 1.00742 0.86677 0.79223 0.85074 0.78451 1.19673 1.20151 1.19497 1.23599 0.93101 0.95981 0.97679 0.93477 0.87748 0.91450 0.87560 0.87919 0.89758 0.91277 0.90161 0.91387 0.91295 0.89586 0.90405 0.90844 0.89970 0.93789 0.88890 0.93261 0.79735 0.91602 0.93453 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 9.07 59.84 0.54 1.42 16 2 N -0.60 -7.97 2.74 -172.35 -0.47 -8.45 16 3 C 0.54 7.68 7.46 -10.98 -0.08 7.60 16 4 O -0.54 -9.13 14.49 5.55 0.08 -9.05 16 5 C -0.18 -1.97 4.80 -91.98 -0.44 -2.42 16 6 H 0.12 1.15 7.26 -51.93 -0.38 0.77 16 7 C -0.12 -1.25 10.24 -26.94 -0.28 -1.53 16 8 C -0.13 -1.34 2.87 -154.80 -0.45 -1.79 16 9 C -0.10 -0.80 8.10 -26.14 -0.21 -1.01 16 10 C -0.14 -1.17 8.08 -25.81 -0.21 -1.38 16 11 C -0.08 -0.88 6.47 -26.14 -0.17 -1.05 16 12 C 0.14 1.85 3.47 -66.54 -0.23 1.62 16 13 H 0.10 1.50 6.96 -51.93 -0.36 1.14 16 14 C -0.13 -1.43 6.48 -25.35 -0.16 -1.60 16 15 C 0.03 0.33 6.49 -2.18 -0.01 0.32 16 16 N -0.49 -7.28 4.06 -231.41 -0.94 -8.21 16 17 C 0.03 0.50 5.39 -4.98 -0.03 0.48 16 18 C 0.45 9.93 7.43 -10.98 -0.08 9.84 16 19 O -0.56 -14.31 14.01 5.55 0.08 -14.23 16 20 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 21 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 22 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 23 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 24 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 25 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 28 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 29 C 0.02 0.39 4.51 -2.18 -0.01 0.38 16 30 H 0.05 0.47 7.91 -51.92 -0.41 0.06 16 31 H 0.10 1.52 6.26 -51.93 -0.33 1.20 16 32 H 0.07 0.74 6.63 -51.93 -0.34 0.39 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 41 H 0.08 0.82 7.24 -51.93 -0.38 0.44 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.46 7.92 -51.93 -0.41 0.05 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 47 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 48 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 49 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 50 H 0.11 2.19 6.43 -51.93 -0.33 1.85 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -32.66 392.82 -9.60 -42.26 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -8.20 Total: 12.65 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.07 Total: 3.27 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.69 Total: -55.33 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.16 Total: -23.28 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.66 -9.60 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494851434.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.026 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds