Wall clock time and date at job start Tue Mar 31 2020 18:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34774 * 120.00610 * 2 1 4 4 O 1.21283 * 120.00485 * 179.97438 * 3 2 1 5 5 C 1.50708 * 119.99469 * 0.26980 * 3 2 1 6 6 H 1.09000 * 115.56009 * 325.46146 * 5 3 2 7 7 C 1.53121 * 117.50803 * 111.26597 * 5 3 2 8 8 C 1.52461 * 117.51065 * 179.72860 * 5 3 2 9 9 C 1.53251 * 128.58615 * 134.95212 * 8 5 3 10 10 C 1.53890 * 86.88408 * 194.88286 * 9 8 5 11 11 C 1.53254 * 128.58554 * 10.14827 * 8 5 3 12 12 C 1.46504 * 119.99970 * 179.97438 * 2 1 3 13 13 H 1.08996 * 110.28979 * 180.67802 * 12 2 1 14 14 C 1.54259 * 110.32198 * 58.54630 * 12 2 1 15 15 C 1.54378 * 105.06457 * 241.10473 * 14 12 2 16 16 N 1.48560 * 104.59319 * 23.85377 * 15 14 12 17 17 C 1.46894 * 111.00292 * 200.96092 * 16 15 14 18 18 C 1.50706 * 109.47332 * 176.49207 * 17 16 15 19 19 O 1.21290 * 119.99878 * 6.05252 * 18 17 16 20 20 N 1.34773 * 119.99891 * 186.06138 * 18 17 16 21 21 C 1.37099 * 119.99834 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00026 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99726 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99550 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00288 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47367 * 89.99703 * 25 23 21 27 27 H 1.48500 * 109.47168 * 209.99754 * 25 23 21 28 28 H 1.48499 * 109.47062 * 329.99456 * 25 23 21 29 29 C 1.48560 * 104.22445 * 320.51818 * 16 15 14 30 30 H 1.09011 * 109.47076 * 90.00069 * 1 2 3 31 31 H 1.08999 * 109.47698 * 209.99940 * 1 2 3 32 32 H 1.08995 * 109.47409 * 330.00812 * 1 2 3 33 33 H 1.09005 * 117.51085 * 214.89473 * 7 5 3 34 34 H 1.08995 * 117.51954 * 0.02562 * 7 5 3 35 35 H 1.08997 * 113.64635 * 309.38639 * 9 8 5 36 36 H 1.09003 * 113.64489 * 80.38685 * 9 8 5 37 37 H 1.08992 * 113.59372 * 270.39123 * 10 9 8 38 38 H 1.09006 * 113.65667 * 139.57710 * 10 9 8 39 39 H 1.08993 * 113.64898 * 279.61055 * 11 8 5 40 40 H 1.08994 * 113.64480 * 50.53024 * 11 8 5 41 41 H 1.09001 * 110.32726 * 0.02562 * 14 12 2 42 42 H 1.09004 * 110.32648 * 122.20946 * 14 12 2 43 43 H 1.09000 * 110.41745 * 142.62863 * 15 14 12 44 44 H 1.08999 * 110.41631 * 264.96238 * 15 14 12 45 45 H 1.09003 * 109.46956 * 296.48953 * 17 16 15 46 46 H 1.09001 * 109.47303 * 56.48638 * 17 16 15 47 47 H 0.97008 * 120.00227 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00065 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.41271 * 280.70619 * 29 16 15 50 50 H 1.08998 * 110.41792 * 158.25685 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3854 2.4723 0.0061 6 1 0.4465 2.4759 -0.5475 7 6 1.4636 3.3281 1.2735 8 6 2.2044 3.7582 0.0122 9 6 2.0040 5.0231 -0.8296 10 6 3.4260 5.4298 -0.4047 11 6 3.7125 3.9320 -0.1980 12 6 2.1974 -1.2688 0.0006 13 1 3.2717 -1.0850 0.0126 14 6 1.8116 -2.1107 -1.2331 15 6 1.1978 -3.4057 -0.6590 16 7 0.7228 -3.0259 0.6964 17 6 0.5711 -4.2102 1.5521 18 6 0.1721 -3.7794 2.9400 19 8 -0.0787 -2.6142 3.1647 20 7 0.0940 -4.6889 3.9316 21 6 -0.2685 -4.2969 5.1943 22 1 -0.4911 -3.2592 5.3946 23 6 -0.3495 -5.2347 6.2165 24 7 -0.6964 -4.8588 7.4270 25 14 0.0363 -7.0293 5.8703 26 1 1.4832 -7.2768 6.0943 27 1 -0.7600 -7.8912 6.7803 28 1 -0.3079 -7.3466 4.4610 29 6 1.7842 -2.1259 1.2163 30 1 -0.3634 0.0000 -1.0278 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 0.5756 3.8948 1.5539 34 1 2.0602 2.9472 2.1023 35 1 1.9059 4.8267 -1.8972 36 1 1.2271 5.6847 -0.4463 37 1 3.4565 6.0110 0.5169 38 1 4.0107 5.8789 -1.2076 39 1 4.3053 3.7191 0.6915 40 1 4.0902 3.4307 -1.0890 41 1 1.0776 -1.5798 -1.8393 42 1 2.6968 -2.3417 -1.8257 43 1 0.3622 -3.7363 -1.2758 44 1 1.9538 -4.1882 -0.5934 45 1 -0.1990 -4.8612 1.1383 46 1 1.5172 -4.7497 1.5970 47 1 0.2943 -5.6209 3.7518 48 1 -0.7526 -5.5133 8.1406 49 1 2.6326 -2.7074 1.5773 50 1 1.3902 -1.4929 2.0114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494851434.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:47 Heat of formation + Delta-G solvation = -18.582242 kcal Electronic energy + Delta-G solvation = -29577.423933 eV Core-core repulsion = 25605.997506 eV Total energy + Delta-G solvation = -3971.426426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67517 -40.75067 -39.81127 -38.73537 -36.22636 -35.85260 -34.64408 -33.76413 -32.49398 -29.74522 -28.57569 -27.53509 -26.58747 -26.02116 -25.02512 -23.95690 -22.34477 -21.67176 -21.25168 -20.30001 -19.92908 -19.12898 -18.47576 -17.79523 -17.22389 -16.92395 -16.62212 -16.47881 -16.25896 -16.10091 -15.89589 -15.44973 -15.24718 -14.89980 -14.69792 -14.39109 -14.11196 -13.69502 -13.62121 -13.35074 -13.23130 -13.17483 -13.07948 -13.04362 -12.94513 -12.77930 -12.57706 -12.43468 -12.42310 -12.30786 -12.23210 -11.98412 -11.79285 -11.48466 -11.27624 -11.03379 -10.75812 -10.58214 -10.36797 -10.24460 -9.66836 -9.37891 -8.41897 -6.02303 1.28715 1.34114 1.43017 1.44629 1.94666 1.97129 2.21896 2.66837 2.76602 3.14398 3.19143 3.29815 3.56940 3.66843 3.72123 3.80244 3.88040 3.94297 4.00197 4.12782 4.16164 4.28818 4.34130 4.38982 4.43601 4.49780 4.54487 4.60768 4.70168 4.72075 4.76101 4.84345 4.84971 4.88807 4.92626 4.97435 5.06598 5.09159 5.13749 5.15677 5.20735 5.38719 5.50831 5.51817 5.57055 5.78997 5.89820 6.01955 6.43042 6.59139 6.88290 7.15882 7.39579 7.96811 8.75769 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.002513 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.847119 B =11140.629089 C =12167.232144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.597 5.597 3 C 0.535 3.465 4 O -0.580 6.580 5 C -0.181 4.181 6 H 0.146 0.854 7 C -0.121 4.121 8 C -0.133 4.133 9 C -0.086 4.086 10 C -0.132 4.132 11 C -0.093 4.093 12 C 0.137 3.863 13 H 0.088 0.912 14 C -0.120 4.120 15 C 0.034 3.966 16 N -0.498 5.498 17 C 0.042 3.958 18 C 0.450 3.550 19 O -0.603 6.603 20 N -0.593 5.593 21 C -0.324 4.324 22 H 0.055 0.945 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.260 1.260 27 H -0.275 1.275 28 H -0.229 1.229 29 C 0.031 3.969 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.126 0.874 46 H 0.078 0.922 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.041 0.959 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 9.286 -23.319 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.328 5.328 3 C 0.325 3.675 4 O -0.461 6.461 5 C -0.202 4.202 6 H 0.164 0.836 7 C -0.158 4.158 8 C -0.134 4.134 9 C -0.123 4.123 10 C -0.170 4.170 11 C -0.131 4.131 12 C 0.032 3.968 13 H 0.106 0.894 14 C -0.159 4.159 15 C -0.093 4.093 16 N -0.223 5.223 17 C -0.089 4.089 18 C 0.238 3.762 19 O -0.487 6.487 20 N -0.236 5.236 21 C -0.453 4.453 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.185 1.185 27 H -0.200 1.200 28 H -0.153 1.153 29 C -0.098 4.098 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.096 0.904 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.060 0.940 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.508 10.257 -22.974 25.560 hybrid contribution 0.817 -1.642 1.154 2.167 sum 5.325 8.615 -21.820 24.056 Atomic orbital electron populations 1.21922 0.77671 1.04228 1.02677 1.47850 1.08137 1.04829 1.71957 1.20254 0.87109 0.85397 0.74772 1.90625 1.15413 1.87848 1.52188 1.22212 1.02819 0.89024 1.06156 0.83645 1.22837 1.02804 1.00312 0.89896 1.22504 0.96075 0.94157 1.00615 1.22501 0.97822 0.92726 0.99271 1.22793 0.96933 0.94959 1.02281 1.22325 0.93014 0.96786 1.00962 1.21787 0.96586 0.83269 0.95147 0.89367 1.22639 1.02040 0.95079 0.96112 1.23279 1.00099 0.96795 0.89156 1.65175 1.41375 1.13232 1.02492 1.22074 1.03258 0.93751 0.89844 1.20865 0.82141 0.85893 0.87338 1.90529 1.54106 1.19881 1.84140 1.42052 1.63381 1.09789 1.08330 1.18970 1.45051 0.95958 0.85369 0.92692 1.26112 0.96509 1.04740 0.94164 1.69807 1.48172 1.37375 1.02269 0.85377 0.79353 0.76418 0.80460 1.18456 1.20031 1.15269 1.23358 0.92875 0.96082 0.97509 0.90619 0.90341 0.90776 0.85120 0.90290 0.88752 0.89552 0.89598 0.89979 0.93541 0.90828 0.89568 0.88911 0.87744 0.92009 0.85627 0.90449 0.77597 0.91211 0.94045 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.80 9.07 127.77 1.16 2.96 16 2 N -0.60 -16.11 2.74 -817.57 -2.24 -18.35 16 3 C 0.53 15.49 7.46 87.66 0.65 16.15 16 4 O -0.58 -20.49 14.49 -3.04 -0.04 -20.53 16 5 C -0.18 -3.99 4.80 -11.68 -0.06 -4.05 16 6 H 0.15 2.45 7.26 -2.39 -0.02 2.43 16 7 C -0.12 -2.56 10.24 30.46 0.31 -2.25 16 8 C -0.13 -2.70 2.87 -52.37 -0.15 -2.85 16 9 C -0.09 -1.21 8.10 30.98 0.25 -0.96 16 10 C -0.13 -2.00 8.08 31.19 0.25 -1.75 16 11 C -0.09 -2.08 6.47 30.98 0.20 -1.88 16 12 C 0.14 3.69 3.47 45.89 0.16 3.85 16 13 H 0.09 2.64 6.96 -2.39 -0.02 2.62 16 14 C -0.12 -2.29 6.48 31.49 0.20 -2.08 16 15 C 0.03 0.64 6.49 86.45 0.56 1.20 16 16 N -0.50 -14.09 4.06 -886.03 -3.60 -17.69 16 17 C 0.04 1.25 5.39 85.56 0.46 1.71 16 18 C 0.45 19.92 7.43 87.66 0.65 20.58 16 19 O -0.60 -32.48 14.01 -3.06 -0.04 -32.52 16 20 N -0.59 -27.75 5.09 -306.98 -1.56 -29.32 16 21 C -0.32 -18.94 10.16 84.04 0.85 -18.08 16 22 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 24 N -0.94 -56.62 13.96 21.66 0.30 -56.32 16 25 Si 0.96 38.80 27.74 68.60 1.90 40.70 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 27 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 29 C 0.03 1.00 4.51 86.45 0.39 1.39 16 30 H 0.08 1.33 7.91 -2.38 -0.02 1.31 16 31 H 0.08 2.30 6.26 -2.39 -0.01 2.29 16 32 H 0.07 1.60 6.63 -2.39 -0.02 1.58 16 33 H 0.13 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 41 H 0.09 1.53 7.24 -2.39 -0.02 1.51 16 42 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.06 1.00 7.92 -2.39 -0.02 0.98 16 45 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.08 1.92 7.98 -2.39 -0.02 1.90 16 47 H 0.39 15.05 5.76 -92.70 -0.53 14.51 16 48 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 49 H 0.04 1.34 7.96 -2.39 -0.02 1.33 16 50 H 0.06 2.71 6.43 -2.39 -0.02 2.69 16 Total: -1.00 -79.77 392.82 1.44 -78.33 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: 0.35 Total: 42.25 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.37 Total: 13.45 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -7.09 Total: -121.67 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.09 Total: -53.05 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.90 Total: 40.70 kcal Total: -79.77 1.44 -78.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494851434.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.746 kcal (2) G-P(sol) polarization free energy of solvation -79.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds