Wall clock time and date at job start Tue Mar 31 2020 18:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 H 1.09004 * 115.55642 * 34.06388 * 5 3 2 7 7 C 1.53123 * 117.50893 * 248.32987 * 5 3 2 8 8 C 1.52456 * 117.51078 * 179.87053 * 5 3 2 9 9 C 1.53257 * 128.58836 * 349.84277 * 8 5 3 10 10 C 1.53891 * 86.88393 * 194.89143 * 9 8 5 11 11 C 1.53259 * 128.58167 * 225.04843 * 8 5 3 12 12 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 13 13 H 1.09007 * 110.28459 * 180.67202 * 12 2 1 14 14 C 1.54264 * 110.32750 * 58.54293 * 12 2 1 15 15 C 1.54373 * 105.05882 * 241.10234 * 14 12 2 16 16 N 1.48561 * 104.59847 * 23.85351 * 15 14 12 17 17 C 1.46893 * 111.00038 * 200.95860 * 16 15 14 18 18 C 1.50700 * 109.47269 * 290.12190 * 17 16 15 19 19 O 1.21293 * 120.00066 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00139 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99942 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00388 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99932 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00181 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00135 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47201 * 60.00021 * 25 23 21 27 27 H 1.48494 * 109.47716 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47369 * 300.00296 * 25 23 21 29 29 C 1.48561 * 104.22046 * 320.51590 * 16 15 14 30 30 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 31 31 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 32 32 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 33 33 H 1.09001 * 117.51563 * 0.02562 * 7 5 3 34 34 H 1.09007 * 117.50984 * 145.06331 * 7 5 3 35 35 H 1.09000 * 113.64500 * 309.39419 * 9 8 5 36 36 H 1.08997 * 113.64219 * 80.39385 * 9 8 5 37 37 H 1.08995 * 113.58490 * 270.39236 * 10 9 8 38 38 H 1.09002 * 113.65593 * 139.57863 * 10 9 8 39 39 H 1.09003 * 113.64719 * 279.60525 * 11 8 5 40 40 H 1.09000 * 113.65093 * 50.51840 * 11 8 5 41 41 H 1.08999 * 110.32036 * 359.97438 * 14 12 2 42 42 H 1.09006 * 110.32134 * 122.10619 * 14 12 2 43 43 H 1.08997 * 110.40887 * 142.63083 * 15 14 12 44 44 H 1.09001 * 110.41592 * 265.06807 * 15 14 12 45 45 H 1.08996 * 109.47302 * 50.12421 * 17 16 15 46 46 H 1.09003 * 109.47404 * 170.12463 * 17 16 15 47 47 H 0.97000 * 120.00246 * 0.02562 * 20 18 17 48 48 H 0.97002 * 120.00334 * 180.02562 * 24 23 21 49 49 H 1.09000 * 110.41232 * 280.70395 * 29 16 15 50 50 H 1.08995 * 110.41535 * 158.25905 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 1 0.4473 2.4709 0.5612 7 6 1.4609 3.3386 -1.2539 8 6 2.2045 3.7582 0.0091 9 6 3.7130 3.9303 0.2176 10 6 3.4270 5.4264 0.4374 11 6 2.0059 5.0160 0.8620 12 6 2.1974 -1.2688 -0.0006 13 1 3.2718 -1.0849 0.0115 14 6 1.8116 -2.1097 -1.2349 15 6 1.1979 -3.4051 -0.6618 16 7 0.7229 -3.0265 0.6940 17 6 0.5713 -4.2115 1.5487 18 6 -0.5965 -5.0328 1.0662 19 8 -1.2390 -4.6671 0.1046 20 7 -0.9270 -6.1736 1.7032 21 6 -1.9891 -6.9210 1.2639 22 1 -2.5612 -6.5955 0.4077 23 6 -2.3295 -8.0974 1.9203 24 7 -1.6332 -8.4938 2.9619 25 14 -3.7771 -9.1154 1.3223 26 1 -3.5358 -9.5435 -0.0791 27 1 -3.9308 -10.3130 2.1866 28 1 -5.0158 -8.2987 1.3841 29 6 1.7844 -2.1269 1.2145 30 1 -0.3633 0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 2.0550 2.9643 -2.0876 34 1 0.5721 3.9071 -1.5280 35 1 4.0926 3.4228 1.1044 36 1 4.3039 3.7248 -0.6750 37 1 3.4555 6.0151 -0.4794 38 1 4.0120 5.8697 1.2432 39 1 1.2283 5.6809 0.4860 40 1 1.9086 4.8106 1.9280 41 1 1.0769 -1.5787 -1.8401 42 1 2.6966 -2.3387 -1.8287 43 1 0.3622 -3.7352 -1.2788 44 1 1.9543 -4.1871 -0.5950 45 1 1.4804 -4.8109 1.5033 46 1 0.3941 -3.8973 2.5773 47 1 -0.4135 -6.4658 2.4725 48 1 -1.8706 -9.3153 3.4199 49 1 2.6327 -2.7087 1.5750 50 1 1.3905 -1.4945 2.0101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494851436.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:51 Heat of formation + Delta-G solvation = -2.480591 kcal Electronic energy + Delta-G solvation = -29111.244641 eV Core-core repulsion = 25140.516435 eV Total energy + Delta-G solvation = -3970.728206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.75225 -39.51863 -38.41386 -37.40825 -35.02681 -33.98189 -33.79219 -31.51419 -31.02083 -28.67966 -27.12924 -26.35201 -25.92266 -24.59993 -23.88951 -23.32849 -21.19606 -20.75107 -19.22015 -19.05267 -18.37639 -17.89595 -17.50900 -16.47830 -16.03454 -15.70757 -15.48073 -15.28262 -15.05026 -14.81810 -14.53061 -14.21088 -13.80945 -13.75999 -13.28707 -13.05135 -12.71904 -12.52737 -12.47947 -12.38127 -12.14871 -11.95904 -11.90901 -11.81849 -11.76316 -11.60716 -11.50824 -11.46406 -11.10370 -10.89467 -10.68469 -10.58079 -10.44797 -10.34548 -10.22153 -9.99334 -9.67986 -9.49078 -8.76752 -8.44305 -8.05607 -7.95630 -6.42223 -3.83142 2.38585 2.85879 3.19130 3.25034 3.29101 3.49934 3.89796 4.02608 4.04848 4.25941 4.34146 4.41461 4.52209 4.60255 4.64475 4.69583 4.82778 5.03622 5.09430 5.18768 5.22186 5.28952 5.32661 5.36667 5.39095 5.44064 5.44957 5.54583 5.58564 5.61880 5.66023 5.72170 5.77819 5.79420 5.84552 5.88977 5.93134 6.02991 6.05104 6.15092 6.18413 6.26161 6.41766 6.53306 7.06051 7.16714 7.37730 7.54164 8.05176 8.12688 8.61095 9.17386 9.53889 10.05644 10.75452 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.001952 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.509740 B =14337.978104 C =14483.053883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.543 3.457 4 O -0.543 6.543 5 C -0.178 4.178 6 H 0.125 0.875 7 C -0.120 4.120 8 C -0.129 4.129 9 C -0.081 4.081 10 C -0.143 4.143 11 C -0.099 4.099 12 C 0.139 3.861 13 H 0.105 0.895 14 C -0.133 4.133 15 C 0.038 3.962 16 N -0.483 5.483 17 C 0.034 3.966 18 C 0.445 3.555 19 O -0.579 6.579 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.019 3.981 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.039 0.961 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.052 0.948 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 22.957 -3.731 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.329 5.329 3 C 0.332 3.668 4 O -0.421 6.421 5 C -0.199 4.199 6 H 0.142 0.858 7 C -0.157 4.157 8 C -0.129 4.129 9 C -0.119 4.119 10 C -0.180 4.180 11 C -0.136 4.136 12 C 0.035 3.965 13 H 0.123 0.877 14 C -0.172 4.172 15 C -0.090 4.090 16 N -0.208 5.208 17 C -0.098 4.098 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.110 4.110 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.653 23.256 -4.259 25.176 hybrid contribution 0.112 -1.453 0.416 1.516 sum 8.765 21.803 -3.842 23.811 Atomic orbital electron populations 1.21946 0.78569 1.04260 1.02277 1.47814 1.07541 1.05012 1.72560 1.19666 0.87268 0.84273 0.75601 1.90657 1.13783 1.87256 1.50432 1.22207 1.02215 0.90238 1.05238 0.85756 1.22765 1.02012 1.00353 0.90613 1.22299 0.96545 0.93735 1.00330 1.22309 0.92591 0.94467 1.02484 1.22815 0.96662 0.97028 1.01487 1.22504 0.97618 0.94272 0.99221 1.21809 0.97240 0.82675 0.94794 0.87749 1.22725 1.01011 0.96294 0.97193 1.23164 0.99373 0.95122 0.91334 1.65158 1.39405 1.14186 1.02002 1.22062 0.98034 0.91761 0.97928 1.19675 0.87496 0.83205 0.86562 1.90497 1.55126 1.71371 1.29246 1.41856 1.29273 1.19962 1.29066 1.19635 1.07023 1.02563 1.13612 0.87987 1.25257 0.99093 0.97636 0.95976 1.69603 1.40360 1.24271 1.20121 0.85921 0.81052 0.78753 0.78504 1.19949 1.20999 1.19906 1.23529 0.94248 0.95899 0.97333 0.92748 0.88149 0.91681 0.88165 0.87652 0.89464 0.91366 0.90210 0.91290 0.91280 0.89611 0.90393 0.90940 0.88045 0.94223 0.93152 0.89336 0.77522 0.91836 0.92941 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.33 59.85 0.56 1.33 16 2 N -0.60 -7.10 2.74 -172.34 -0.47 -7.57 16 3 C 0.54 6.74 7.46 -10.98 -0.08 6.66 16 4 O -0.54 -8.23 14.49 5.55 0.08 -8.15 16 5 C -0.18 -1.71 5.29 -91.99 -0.49 -2.19 16 6 H 0.12 1.01 6.43 -51.93 -0.33 0.68 16 7 C -0.12 -0.99 10.24 -26.95 -0.28 -1.26 16 8 C -0.13 -1.15 2.88 -154.80 -0.45 -1.60 16 9 C -0.08 -0.77 6.47 -26.13 -0.17 -0.94 16 10 C -0.14 -1.01 8.08 -25.81 -0.21 -1.22 16 11 C -0.10 -0.71 8.10 -26.14 -0.21 -0.92 16 12 C 0.14 1.74 3.47 -66.55 -0.23 1.50 16 13 H 0.10 1.37 6.96 -51.93 -0.36 1.01 16 14 C -0.13 -1.67 6.48 -25.35 -0.16 -1.84 16 15 C 0.04 0.58 5.80 -2.18 -0.01 0.57 16 16 N -0.48 -7.63 3.94 -231.42 -0.91 -8.54 16 17 C 0.03 0.59 5.30 -4.98 -0.03 0.56 16 18 C 0.45 10.25 7.59 -10.99 -0.08 10.17 16 19 O -0.58 -15.10 14.42 5.55 0.08 -15.02 16 20 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 25 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.02 0.25 5.42 -2.18 -0.01 0.23 16 30 H 0.05 0.56 7.91 -51.93 -0.41 0.15 16 31 H 0.10 1.30 6.27 -51.93 -0.33 0.97 16 32 H 0.06 0.56 5.99 -51.93 -0.31 0.25 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.09 0.93 8.05 -51.93 -0.42 0.51 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.99 7.24 -51.93 -0.38 0.62 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 44 H 0.04 0.59 7.82 -51.93 -0.41 0.19 16 45 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 46 H 0.09 1.41 8.13 -51.93 -0.42 0.98 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.05 0.64 8.00 -51.93 -0.42 0.22 16 50 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -31.42 395.99 -9.88 -41.31 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -8.18 Total: 10.80 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.09 Total: 3.17 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.72 Total: -53.97 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.16 Total: -23.17 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.42 -9.88 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494851436.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.827 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds