Wall clock time and date at job start Tue Mar 31 2020 18:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34774 * 120.00428 * 2 1 4 4 O 1.21284 * 120.00156 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99677 * 0.02562 * 3 2 1 6 6 H 1.09004 * 115.58042 * 34.37614 * 5 3 2 7 7 C 1.53124 * 117.51296 * 248.60633 * 5 3 2 8 8 C 1.52463 * 59.91303 * 252.57250 * 7 5 3 9 9 C 1.53253 * 128.58661 * 242.37621 * 8 7 5 10 10 C 1.53884 * 86.88536 * 194.88792 * 9 8 7 11 11 C 1.53255 * 128.58200 * 117.57682 * 8 7 5 12 12 C 1.46511 * 119.99837 * 180.02562 * 2 1 3 13 13 H 1.08999 * 110.28471 * 179.32451 * 12 2 1 14 14 C 1.54262 * 110.32167 * 301.45175 * 12 2 1 15 15 C 1.54380 * 105.05905 * 118.89562 * 14 12 2 16 16 N 1.48562 * 104.59175 * 23.85401 * 15 14 12 17 17 C 1.46905 * 110.99681 * 200.95704 * 16 15 14 18 18 C 1.50694 * 109.47660 * 290.12669 * 17 16 15 19 19 O 1.21301 * 119.99493 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00475 * 179.97438 * 18 17 16 21 21 C 1.37105 * 120.00046 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00086 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99746 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00439 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99870 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47075 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47164 * 120.00072 * 25 23 21 28 28 H 1.48503 * 109.47296 * 240.00554 * 25 23 21 29 29 C 1.48557 * 104.22244 * 320.51308 * 16 15 14 30 30 H 1.09000 * 109.47379 * 89.99859 * 1 2 3 31 31 H 1.09007 * 109.47554 * 210.00001 * 1 2 3 32 32 H 1.09003 * 109.46863 * 329.99736 * 1 2 3 33 33 H 1.09002 * 117.51408 * 145.10348 * 7 5 3 34 34 H 1.08998 * 117.51142 * 0.04328 * 7 5 3 35 35 H 1.09000 * 113.64538 * 309.38960 * 9 8 7 36 36 H 1.09011 * 113.64293 * 80.38953 * 9 8 7 37 37 H 1.08996 * 113.59311 * 270.39425 * 10 9 8 38 38 H 1.09000 * 113.66024 * 139.57840 * 10 9 8 39 39 H 1.08999 * 113.65298 * 279.60951 * 11 8 7 40 40 H 1.08997 * 113.64902 * 50.62025 * 11 8 7 41 41 H 1.08994 * 110.32526 * 237.79347 * 14 12 2 42 42 H 1.09000 * 110.32632 * 359.90189 * 14 12 2 43 43 H 1.08996 * 110.41215 * 142.62788 * 15 14 12 44 44 H 1.08995 * 110.41327 * 264.95942 * 15 14 12 45 45 H 1.09009 * 109.47079 * 50.12634 * 17 16 15 46 46 H 1.09003 * 109.47013 * 170.12032 * 17 16 15 47 47 H 0.96998 * 120.00010 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00289 * 179.97438 * 24 23 21 49 49 H 1.08999 * 110.41465 * 280.70432 * 29 16 15 50 50 H 1.09001 * 110.40986 * 158.26402 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 1 0.4475 2.4740 0.5561 7 6 1.4603 3.3328 -1.2637 8 6 2.2052 3.7592 -0.0037 9 6 2.0078 5.0218 0.8422 10 6 3.3654 4.6981 1.4906 11 6 3.7140 3.9320 0.2023 12 6 2.1974 -1.2688 -0.0006 13 1 3.2718 -1.0850 -0.0125 14 6 1.8116 -2.1107 1.2331 15 6 1.1978 -3.4057 0.6590 16 7 1.7750 -3.5207 -0.7051 17 6 0.9480 -4.3875 -1.5553 18 6 1.0661 -5.8140 -1.0840 19 8 1.7705 -6.0823 -0.1336 20 7 0.3893 -6.7916 -1.7184 21 6 0.4972 -8.0895 -1.2899 22 1 1.1243 -8.3284 -0.4437 23 6 -0.2010 -9.0973 -1.9437 24 7 -0.9644 -8.8066 -2.9730 25 14 -0.0545 -10.8655 -1.3595 26 1 0.8596 -10.9265 -0.1908 27 1 -1.3948 -11.3694 -0.9658 28 1 0.4877 -11.7062 -2.4570 29 6 1.7843 -2.1259 -1.2163 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 0.5717 3.9005 -1.5398 34 1 2.0539 2.9544 -2.0959 35 1 2.0101 5.9431 0.2597 36 1 1.1670 4.9581 1.5331 37 1 3.2874 4.0594 2.3704 38 1 3.9900 5.5754 1.6589 39 1 4.2412 2.9947 0.3802 40 1 4.1912 4.5500 -0.5582 41 1 2.6967 -2.3417 1.8257 42 1 1.0786 -1.5793 1.8400 43 1 1.4843 -4.2641 1.2665 44 1 0.1123 -3.3220 0.6085 45 1 -0.0930 -4.0698 -1.4944 46 1 1.2897 -4.3165 -2.5879 47 1 -0.1742 -6.5770 -2.4782 48 1 -1.4516 -9.5101 -3.4296 49 1 0.7907 -1.8411 -1.5622 50 1 2.5124 -2.0207 -2.0206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494851439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:57 Heat of formation + Delta-G solvation = -1.489464 kcal Electronic energy + Delta-G solvation = -28984.039903 eV Core-core repulsion = 25013.354675 eV Total energy + Delta-G solvation = -3970.685228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89369 -39.54664 -38.43894 -37.42674 -35.25863 -34.03383 -33.81602 -31.51653 -31.00938 -28.76276 -27.25604 -26.60126 -25.94532 -24.73638 -23.97087 -23.00549 -21.22391 -20.94964 -19.51799 -19.02483 -18.41958 -17.88783 -17.67053 -16.48380 -16.07358 -15.72074 -15.51913 -15.23709 -15.14469 -14.88676 -14.52733 -14.31832 -13.94434 -13.62878 -13.46444 -13.11505 -13.01214 -12.81213 -12.71862 -12.55537 -12.21536 -12.17609 -12.00801 -11.84585 -11.69841 -11.57738 -11.49237 -11.21763 -11.16873 -10.90941 -10.74494 -10.59917 -10.39861 -10.34187 -10.22415 -10.13386 -9.63336 -9.50251 -8.86088 -8.51400 -8.03896 -7.94472 -6.41683 -3.82350 2.25085 2.64476 3.16291 3.26870 3.34200 3.42560 3.90411 3.93136 4.07753 4.20942 4.29758 4.37210 4.45940 4.54334 4.59422 4.65679 4.72386 4.83609 5.05757 5.07115 5.11593 5.16545 5.25126 5.29024 5.32042 5.32564 5.39639 5.42116 5.43683 5.45183 5.58632 5.61839 5.68325 5.75935 5.78681 5.88584 5.95300 5.99923 6.04972 6.11558 6.18083 6.26682 6.35991 6.41676 7.09285 7.15761 7.19117 7.55591 7.99635 8.06652 8.62051 9.18578 9.54690 10.06633 10.76235 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.039013 B = 0.001872 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.544979 B =14953.331062 C =15199.846037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.605 5.605 3 C 0.546 3.454 4 O -0.533 6.533 5 C -0.164 4.164 6 H 0.124 0.876 7 C -0.137 4.137 8 C -0.126 4.126 9 C -0.099 4.099 10 C -0.139 4.139 11 C -0.107 4.107 12 C 0.137 3.863 13 H 0.112 0.888 14 C -0.133 4.133 15 C 0.038 3.962 16 N -0.481 5.481 17 C 0.036 3.964 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.023 3.977 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.037 0.963 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.047 0.953 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 27.405 4.180 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.338 5.338 3 C 0.334 3.666 4 O -0.410 6.410 5 C -0.185 4.185 6 H 0.142 0.858 7 C -0.174 4.174 8 C -0.127 4.127 9 C -0.136 4.136 10 C -0.176 4.176 11 C -0.144 4.144 12 C 0.034 3.966 13 H 0.130 0.870 14 C -0.172 4.172 15 C -0.089 4.089 16 N -0.206 5.206 17 C -0.096 4.096 18 C 0.231 3.769 19 O -0.460 6.460 20 N -0.203 5.203 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.107 4.107 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.305 26.823 4.714 27.266 hybrid contribution -1.609 -0.626 -0.456 1.786 sum -0.304 26.197 4.258 26.543 Atomic orbital electron populations 1.21817 0.79656 1.03278 1.02154 1.47896 1.06952 1.05685 1.73270 1.19674 0.87313 0.84102 0.75512 1.90635 1.13733 1.86868 1.49735 1.22141 1.01396 0.89677 1.05266 0.85801 1.22844 1.02733 1.00874 0.90976 1.22174 0.96740 0.94102 0.99636 1.22519 0.98140 0.95431 0.97533 1.22752 0.96821 1.00288 0.97740 1.22627 0.93084 1.01929 0.96767 1.21852 0.98298 0.81699 0.94789 0.87011 1.22717 1.01804 0.95595 0.97098 1.23165 0.96135 0.98339 0.91310 1.65133 1.47912 1.05633 1.01879 1.22055 0.95557 0.93889 0.98086 1.19677 0.84798 0.85954 0.86519 1.90510 1.42511 1.83171 1.29840 1.41862 1.41808 1.06683 1.29899 1.19750 1.26460 0.82113 1.14348 0.87856 1.25256 0.96314 1.00431 0.96016 1.69616 1.29760 1.34246 1.20794 0.85804 0.78041 0.81787 0.78737 1.19219 1.20811 1.20750 1.23456 1.00667 0.89190 0.97346 0.92302 0.90684 0.90867 0.87732 0.88129 0.89412 0.91476 0.90264 0.91371 0.88528 0.90077 0.90128 0.91041 0.88005 0.94489 0.93295 0.89250 0.77538 0.91959 0.93503 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 8.89 59.84 0.53 1.09 16 2 N -0.61 -6.37 2.79 -172.35 -0.48 -6.85 16 3 C 0.55 6.27 7.46 -10.99 -0.08 6.18 16 4 O -0.53 -7.85 13.46 5.55 0.07 -7.78 16 5 C -0.16 -1.38 5.29 -91.92 -0.49 -1.87 16 6 H 0.12 0.80 6.44 -51.93 -0.33 0.47 16 7 C -0.14 -1.02 10.23 -26.94 -0.28 -1.29 16 8 C -0.13 -1.05 2.88 -154.73 -0.45 -1.49 16 9 C -0.10 -0.65 8.10 -26.14 -0.21 -0.86 16 10 C -0.14 -1.04 8.08 -25.81 -0.21 -1.25 16 11 C -0.11 -0.98 7.63 -26.13 -0.20 -1.18 16 12 C 0.14 1.72 3.46 -66.54 -0.23 1.49 16 13 H 0.11 1.61 6.96 -51.93 -0.36 1.25 16 14 C -0.13 -1.68 6.17 -25.35 -0.16 -1.84 16 15 C 0.04 0.60 5.80 -2.18 -0.01 0.58 16 16 N -0.48 -8.07 5.06 -231.41 -1.17 -9.25 16 17 C 0.04 0.64 5.30 -4.98 -0.03 0.61 16 18 C 0.45 10.51 7.58 -10.99 -0.08 10.43 16 19 O -0.58 -15.57 14.42 5.54 0.08 -15.49 16 20 N -0.57 -14.31 5.29 -10.96 -0.06 -14.37 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 25 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.02 0.30 6.09 -2.19 -0.01 0.29 16 30 H 0.06 0.41 7.89 -51.93 -0.41 0.00 16 31 H 0.07 0.58 6.84 -51.92 -0.36 0.23 16 32 H 0.07 0.40 6.00 -51.93 -0.31 0.09 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 1.15 5.83 -51.93 -0.30 0.85 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.78 6.98 -51.93 -0.36 0.42 16 43 H 0.10 1.90 6.91 -51.93 -0.36 1.54 16 44 H 0.04 0.54 7.82 -51.93 -0.41 0.13 16 45 H 0.05 0.78 7.88 -51.92 -0.41 0.37 16 46 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 47 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.05 0.56 6.73 -51.93 -0.35 0.21 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 394.15 15.07 5.94 5.94 Total: -1.00 -32.62 394.15 -10.08 -42.69 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.02 Total: 9.91 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.14 Total: 2.94 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.99 Total: -54.27 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.15 Total: -23.27 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.62 -10.08 -42.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494851439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.204 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds