Wall clock time and date at job start Tue Mar 31 2020 18:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34774 * 120.00428 * 2 1 4 4 O 1.21284 * 120.00156 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99677 * 0.02562 * 3 2 1 6 6 H 1.09004 * 115.58042 * 34.37614 * 5 3 2 7 7 C 1.53124 * 117.51296 * 248.60633 * 5 3 2 8 8 C 1.52463 * 59.91303 * 252.57250 * 7 5 3 9 9 C 1.53253 * 128.58661 * 242.37621 * 8 7 5 10 10 C 1.53884 * 86.88536 * 194.88792 * 9 8 7 11 11 C 1.53255 * 128.58200 * 117.57682 * 8 7 5 12 12 C 1.46511 * 119.99837 * 180.02562 * 2 1 3 13 13 H 1.08999 * 110.28471 * 179.32451 * 12 2 1 14 14 C 1.54262 * 110.32167 * 301.45175 * 12 2 1 15 15 C 1.54380 * 105.05905 * 118.89562 * 14 12 2 16 16 N 1.48562 * 104.59175 * 23.85401 * 15 14 12 17 17 C 1.46905 * 110.99681 * 200.95704 * 16 15 14 18 18 C 1.50694 * 109.47660 * 290.12669 * 17 16 15 19 19 O 1.21301 * 119.99493 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00475 * 179.97438 * 18 17 16 21 21 C 1.37105 * 120.00046 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00086 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99746 * 179.97438 * 21 20 18 24 24 N 1.31407 * 120.00439 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99870 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47075 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47164 * 120.00072 * 25 23 21 28 28 H 1.48503 * 109.47296 * 240.00554 * 25 23 21 29 29 C 1.48557 * 104.22244 * 320.51308 * 16 15 14 30 30 H 1.09000 * 109.47379 * 89.99859 * 1 2 3 31 31 H 1.09007 * 109.47554 * 210.00001 * 1 2 3 32 32 H 1.09003 * 109.46863 * 329.99736 * 1 2 3 33 33 H 1.09002 * 117.51408 * 145.10348 * 7 5 3 34 34 H 1.08998 * 117.51142 * 0.04328 * 7 5 3 35 35 H 1.09000 * 113.64538 * 309.38960 * 9 8 7 36 36 H 1.09011 * 113.64293 * 80.38953 * 9 8 7 37 37 H 1.08996 * 113.59311 * 270.39425 * 10 9 8 38 38 H 1.09000 * 113.66024 * 139.57840 * 10 9 8 39 39 H 1.08999 * 113.65298 * 279.60951 * 11 8 7 40 40 H 1.08997 * 113.64902 * 50.62025 * 11 8 7 41 41 H 1.08994 * 110.32526 * 237.79347 * 14 12 2 42 42 H 1.09000 * 110.32632 * 359.90189 * 14 12 2 43 43 H 1.08996 * 110.41215 * 142.62788 * 15 14 12 44 44 H 1.08995 * 110.41327 * 264.95942 * 15 14 12 45 45 H 1.09009 * 109.47079 * 50.12634 * 17 16 15 46 46 H 1.09003 * 109.47013 * 170.12032 * 17 16 15 47 47 H 0.96998 * 120.00010 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00289 * 179.97438 * 24 23 21 49 49 H 1.08999 * 110.41465 * 280.70432 * 29 16 15 50 50 H 1.09001 * 110.40986 * 158.26402 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 1 0.4475 2.4740 0.5561 7 6 1.4603 3.3328 -1.2637 8 6 2.2052 3.7592 -0.0037 9 6 2.0078 5.0218 0.8422 10 6 3.3654 4.6981 1.4906 11 6 3.7140 3.9320 0.2023 12 6 2.1974 -1.2688 -0.0006 13 1 3.2718 -1.0850 -0.0125 14 6 1.8116 -2.1107 1.2331 15 6 1.1978 -3.4057 0.6590 16 7 1.7750 -3.5207 -0.7051 17 6 0.9480 -4.3875 -1.5553 18 6 1.0661 -5.8140 -1.0840 19 8 1.7705 -6.0823 -0.1336 20 7 0.3893 -6.7916 -1.7184 21 6 0.4972 -8.0895 -1.2899 22 1 1.1243 -8.3284 -0.4437 23 6 -0.2010 -9.0973 -1.9437 24 7 -0.9644 -8.8066 -2.9730 25 14 -0.0545 -10.8655 -1.3595 26 1 0.8596 -10.9265 -0.1908 27 1 -1.3948 -11.3694 -0.9658 28 1 0.4877 -11.7062 -2.4570 29 6 1.7843 -2.1259 -1.2163 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 0.5717 3.9005 -1.5398 34 1 2.0539 2.9544 -2.0959 35 1 2.0101 5.9431 0.2597 36 1 1.1670 4.9581 1.5331 37 1 3.2874 4.0594 2.3704 38 1 3.9900 5.5754 1.6589 39 1 4.2412 2.9947 0.3802 40 1 4.1912 4.5500 -0.5582 41 1 2.6967 -2.3417 1.8257 42 1 1.0786 -1.5793 1.8400 43 1 1.4843 -4.2641 1.2665 44 1 0.1123 -3.3220 0.6085 45 1 -0.0930 -4.0698 -1.4944 46 1 1.2897 -4.3165 -2.5879 47 1 -0.1742 -6.5770 -2.4782 48 1 -1.4516 -9.5101 -3.4296 49 1 0.7907 -1.8411 -1.5622 50 1 2.5124 -2.0207 -2.0206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494851439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:56 Heat of formation + Delta-G solvation = -23.272235 kcal Electronic energy + Delta-G solvation = -28984.984475 eV Core-core repulsion = 25013.354675 eV Total energy + Delta-G solvation = -3971.629799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71525 -40.66896 -39.76226 -38.70767 -36.33917 -35.82212 -34.62746 -33.32958 -32.44074 -29.84439 -28.47805 -27.64828 -26.53862 -26.22444 -25.10172 -23.57758 -22.53335 -21.84373 -21.03718 -20.19398 -19.83086 -19.09198 -18.52740 -17.80373 -17.36139 -16.78905 -16.48109 -16.31908 -16.19967 -16.03802 -15.83736 -15.70295 -15.48434 -14.85060 -14.61311 -14.34353 -14.01567 -13.67799 -13.66688 -13.47753 -13.38897 -13.26725 -13.18920 -12.95405 -12.79913 -12.68386 -12.42812 -12.42081 -12.37635 -12.33424 -12.20500 -12.11282 -11.80616 -11.49151 -11.28542 -11.00087 -10.74963 -10.42994 -10.34807 -10.00836 -9.70420 -9.40947 -8.46881 -5.95270 1.36071 1.41424 1.43785 1.55428 1.81376 2.05112 2.28717 2.79534 2.84499 3.19693 3.29526 3.35576 3.53015 3.62002 3.72929 3.83054 3.87770 3.98662 4.00393 4.04041 4.17718 4.21785 4.30824 4.35711 4.43716 4.50364 4.50670 4.54887 4.63817 4.70551 4.73140 4.83593 4.86619 4.90613 4.92152 4.94839 5.05238 5.07007 5.10283 5.11507 5.28415 5.41059 5.42733 5.45040 5.52813 5.81366 5.90122 6.06341 6.35805 6.60728 7.13268 7.15301 7.56365 8.12596 8.70781 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.039013 B = 0.001872 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.544979 B =14953.331062 C =15199.846037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.602 5.602 3 C 0.537 3.463 4 O -0.576 6.576 5 C -0.165 4.165 6 H 0.152 0.848 7 C -0.125 4.125 8 C -0.139 4.139 9 C -0.084 4.084 10 C -0.138 4.138 11 C -0.119 4.119 12 C 0.144 3.856 13 H 0.087 0.913 14 C -0.121 4.121 15 C 0.042 3.958 16 N -0.509 5.509 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.032 3.968 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.070 0.930 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 29.368 3.746 29.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.334 5.334 3 C 0.327 3.673 4 O -0.455 6.455 5 C -0.186 4.186 6 H 0.169 0.831 7 C -0.162 4.162 8 C -0.140 4.140 9 C -0.121 4.121 10 C -0.176 4.176 11 C -0.156 4.156 12 C 0.039 3.961 13 H 0.105 0.895 14 C -0.160 4.160 15 C -0.086 4.086 16 N -0.234 5.234 17 C -0.082 4.082 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.097 4.097 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.126 0.874 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.068 28.809 4.260 29.141 hybrid contribution -0.810 -1.220 -0.322 1.499 sum -1.878 27.589 3.938 27.932 Atomic orbital electron populations 1.22083 0.77342 1.04651 1.03400 1.47937 1.08238 1.04535 1.72661 1.20315 0.87063 0.85287 0.74615 1.90634 1.15781 1.87514 1.51618 1.22201 1.01950 0.87816 1.06594 0.83074 1.22919 1.03233 1.00068 0.89956 1.22319 0.95908 0.94907 1.00843 1.22484 0.97550 0.94955 0.97118 1.22743 0.98078 1.00219 0.96537 1.22637 0.93995 1.00752 0.98212 1.21544 0.97374 0.82729 0.94426 0.89486 1.22603 1.01767 0.94408 0.97173 1.23037 0.96996 0.98064 0.90501 1.65035 1.48378 1.07576 1.02410 1.21906 0.97490 0.90048 0.98759 1.20720 0.83042 0.87971 0.85356 1.90490 1.43841 1.84376 1.31504 1.41916 1.42495 1.06424 1.30337 1.19678 1.27660 0.83972 1.14768 0.90441 1.26014 0.95489 1.03889 0.95872 1.69669 1.29731 1.35628 1.21092 0.84884 0.78298 0.77062 0.78162 1.19946 1.19489 1.19678 1.23403 1.01870 0.87046 0.97344 0.91087 0.90618 0.88260 0.84883 0.89583 0.87869 0.90203 0.91249 0.90254 0.91956 0.89627 0.91225 0.88729 0.91946 0.93056 0.90584 0.87421 0.76993 0.91317 0.91210 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.89 127.77 1.14 1.91 16 2 N -0.60 -11.62 2.79 -817.57 -2.28 -13.90 16 3 C 0.54 11.86 7.46 87.66 0.65 12.52 16 4 O -0.58 -17.57 13.46 -3.04 -0.04 -17.61 16 5 C -0.17 -2.38 5.29 -11.63 -0.06 -2.44 16 6 H 0.15 1.31 6.44 -2.39 -0.02 1.29 16 7 C -0.12 -1.52 10.23 30.46 0.31 -1.21 16 8 C -0.14 -2.06 2.88 -52.33 -0.15 -2.21 16 9 C -0.08 -0.86 8.10 30.98 0.25 -0.61 16 10 C -0.14 -1.93 8.08 31.19 0.25 -1.67 16 11 C -0.12 -2.19 7.63 30.98 0.24 -1.95 16 12 C 0.14 3.54 3.46 45.88 0.16 3.69 16 13 H 0.09 2.60 6.96 -2.39 -0.02 2.59 16 14 C -0.12 -2.99 6.17 31.49 0.19 -2.80 16 15 C 0.04 1.30 5.80 86.45 0.50 1.80 16 16 N -0.51 -16.86 5.06 -886.05 -4.49 -21.35 16 17 C 0.05 1.71 5.30 85.55 0.45 2.16 16 18 C 0.44 21.19 7.58 87.66 0.66 21.85 16 19 O -0.62 -34.53 14.42 -3.09 -0.04 -34.57 16 20 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 21 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.52 13.05 21.66 0.28 -49.24 16 25 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 C 0.03 0.80 6.09 86.45 0.53 1.33 16 30 H 0.07 0.70 7.89 -2.39 -0.02 0.68 16 31 H 0.08 0.91 6.84 -2.38 -0.02 0.89 16 32 H 0.10 0.65 6.00 -2.39 -0.01 0.64 16 33 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 1.59 5.83 -2.39 -0.01 1.58 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 1.89 6.98 -2.39 -0.02 1.88 16 43 H 0.06 2.44 6.91 -2.39 -0.02 2.42 16 44 H 0.05 1.42 7.82 -2.39 -0.02 1.41 16 45 H 0.08 2.24 7.88 -2.38 -0.02 2.22 16 46 H 0.11 3.34 8.13 -2.39 -0.02 3.32 16 47 H 0.40 19.24 7.90 -92.71 -0.73 18.50 16 48 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 49 H 0.07 1.45 6.73 -2.39 -0.02 1.43 16 50 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -74.02 394.15 0.46 -73.56 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.22 Total: 35.05 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 6.41 Total: 14.06 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -8.11 Total: -115.63 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -0.09 Total: -52.18 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -74.02 0.46 -73.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494851439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.286 kcal (2) G-P(sol) polarization free energy of solvation -74.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds