Wall clock time and date at job start Tue Mar 31 2020 18:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 120.00433 * 2 1 4 4 O 1.21273 * 120.00033 * 354.91555 * 3 2 1 5 5 C 1.50701 * 120.00004 * 174.91279 * 3 2 1 6 6 C 1.50706 * 112.84810 * 306.43531 * 5 3 2 7 7 O 1.21288 * 119.99717 * 117.84716 * 6 5 3 8 8 N 1.34772 * 119.99893 * 298.11672 * 6 5 3 9 9 C 1.46880 * 120.46861 * 352.98891 * 8 6 5 10 10 C 1.52857 * 109.01956 * 235.48467 * 9 8 6 11 11 C 1.52665 * 109.17493 * 307.81563 * 10 9 8 12 12 C 1.53481 * 113.62193 * 188.99304 * 11 10 9 13 13 N 1.47672 * 85.98632 * 137.71091 * 12 11 10 14 14 C 1.36932 * 134.45603 * 155.64990 * 13 12 11 15 15 H 1.08003 * 119.99701 * 180.02562 * 14 13 12 16 16 C 1.38817 * 120.00413 * 0.04775 * 14 13 12 17 17 N 1.31623 * 119.99424 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00095 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47030 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47181 * 119.99797 * 18 16 14 21 21 H 1.48499 * 109.46752 * 239.99665 * 18 16 14 22 22 C 1.47660 * 91.08661 * 335.68207 * 13 12 11 23 23 C 1.52671 * 113.18382 * 57.46336 * 11 10 9 24 24 C 1.46882 * 120.46392 * 173.26155 * 8 6 5 25 25 C 1.53784 * 113.61355 * 77.63011 * 5 3 2 26 26 C 1.53949 * 87.01802 * 89.23039 * 25 5 3 27 27 C 1.53775 * 113.61673 * 175.23804 * 5 3 2 28 28 H 1.08999 * 109.46779 * 299.99936 * 1 2 3 29 29 H 1.09004 * 109.47165 * 59.99265 * 1 2 3 30 30 H 1.08996 * 109.47535 * 179.97438 * 1 2 3 31 31 H 0.97008 * 119.99438 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.58595 * 355.31496 * 9 8 6 33 33 H 1.09003 * 109.59092 * 115.74192 * 9 8 6 34 34 H 1.09001 * 109.60976 * 187.84045 * 10 9 8 35 35 H 1.09001 * 109.44445 * 67.69703 * 10 9 8 36 36 H 1.09005 * 113.79249 * 251.97493 * 12 11 10 37 37 H 1.09002 * 113.79221 * 23.44581 * 12 11 10 38 38 H 0.97002 * 119.99556 * 180.02562 * 17 16 14 39 39 H 1.09000 * 113.79472 * 270.05140 * 22 13 12 40 40 H 1.08997 * 113.79360 * 138.58058 * 22 13 12 41 41 H 1.09004 * 109.53335 * 182.51358 * 23 11 10 42 42 H 1.09006 * 109.59535 * 62.33188 * 23 11 10 43 43 H 1.09000 * 109.58952 * 244.26130 * 24 8 6 44 44 H 1.09001 * 109.58758 * 4.54909 * 24 8 6 45 45 H 1.09005 * 113.61371 * 203.74867 * 25 5 3 46 46 H 1.09002 * 113.61417 * 334.65260 * 25 5 3 47 47 H 1.09000 * 113.53811 * 270.80773 * 26 25 5 48 48 H 1.09002 * 113.66858 * 139.93557 * 26 25 5 49 49 H 1.08998 * 113.61458 * 25.34740 * 27 5 3 50 50 H 1.08996 * 113.61620 * 156.25000 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5362 2.2153 -0.0931 5 6 3.6415 1.1696 0.1157 6 6 4.1377 0.3960 1.3102 7 8 4.8412 -0.5792 1.1515 8 7 3.7952 0.7847 2.5544 9 6 3.0693 2.0436 2.7680 10 6 3.8550 2.9110 3.7514 11 6 4.1666 2.0937 5.0027 12 6 4.7610 2.9249 6.1479 13 7 3.8668 2.1528 7.0338 14 6 3.8829 1.8257 8.3634 15 1 3.0852 1.2304 8.7827 16 6 4.9241 2.2596 9.1725 17 7 5.8962 2.9850 8.6614 18 14 4.9462 1.8128 10.9861 19 1 3.7488 0.9962 11.3094 20 1 6.1737 1.0338 11.2891 21 1 4.9336 3.0536 11.8018 22 6 2.9489 1.8741 5.9113 23 6 4.9461 0.8148 4.7066 24 6 4.1480 -0.0417 3.7163 25 6 4.3608 0.8080 -1.1945 26 6 4.3331 2.3101 -1.5303 27 6 4.2672 2.5681 -0.0157 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8402 -0.0004 32 1 2.9658 2.5712 1.8198 33 1 2.0828 1.8313 3.1800 34 1 3.2616 3.7836 4.0245 35 1 4.7861 3.2345 3.2861 36 1 5.8207 2.7388 6.3223 37 1 4.5171 3.9860 6.0937 38 1 6.6239 3.2879 9.2267 39 1 2.1666 2.6227 5.7866 40 1 2.5685 0.8527 5.8975 41 1 5.0969 0.2576 5.6312 42 1 5.9131 1.0684 4.2721 43 1 3.2390 -0.4041 4.1964 44 1 4.7527 -0.8886 3.3922 45 1 5.3656 0.4122 -1.0462 46 1 3.7597 0.1978 -1.8686 47 1 3.4355 2.6200 -2.0655 48 1 5.2503 2.6716 -1.9953 49 1 3.5906 3.3768 0.2604 50 1 5.2462 2.6545 0.4555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495984751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:53 Heat of formation + Delta-G solvation = 11.800067 kcal Electronic energy + Delta-G solvation = -31111.490838 eV Core-core repulsion = 27141.381888 eV Total energy + Delta-G solvation = -3970.108950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65574 -39.73691 -38.66445 -37.28456 -35.80528 -34.88185 -32.50660 -31.16728 -30.54428 -28.62506 -26.95307 -26.26927 -25.77323 -25.00978 -23.60476 -23.06682 -21.88313 -21.33856 -20.19963 -19.49704 -18.31188 -17.11300 -16.70568 -16.46923 -16.28056 -16.04320 -15.29620 -15.19433 -14.95822 -14.83916 -14.62207 -14.19355 -13.78278 -13.66060 -13.53382 -13.22165 -13.04436 -12.75373 -12.62339 -12.51063 -12.30796 -12.16253 -12.05479 -11.74018 -11.54422 -11.28429 -11.09489 -11.02369 -10.86258 -10.82964 -10.69167 -10.33726 -10.21816 -10.13581 -9.71803 -9.70288 -9.49478 -9.46074 -9.32988 -8.77752 -8.47363 -6.84199 -5.74874 -3.06455 2.17271 2.42467 2.84367 2.96350 3.39096 3.44543 3.46995 4.15585 4.18284 4.31482 4.40216 4.46907 4.49242 4.89102 4.96018 5.06513 5.08589 5.19374 5.23658 5.31435 5.36387 5.37466 5.47480 5.49467 5.50916 5.57421 5.63001 5.68682 5.73084 5.74220 5.89001 5.91398 5.96974 6.02637 6.07047 6.18550 6.27806 6.32452 6.43533 6.61451 6.64765 6.81927 6.86336 7.07525 7.25599 7.38832 7.40083 7.60403 7.82812 8.00731 8.05823 9.07045 9.73147 10.63625 11.42107 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.002962 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.024397 B = 9450.153518 C = 9719.088796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.730 5.730 3 C 0.548 3.452 4 O -0.524 6.524 5 C -0.139 4.139 6 C 0.531 3.469 7 O -0.539 6.539 8 N -0.595 5.595 9 C 0.099 3.901 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.174 3.826 13 N -0.609 5.609 14 C -0.221 4.221 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.920 5.920 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.126 3.874 23 C -0.095 4.095 24 C 0.112 3.888 25 C -0.102 4.102 26 C -0.140 4.140 27 C -0.110 4.110 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.405 0.595 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.252 0.748 39 H 0.031 0.969 40 H 0.039 0.961 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.666 -4.559 -21.936 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.381 5.381 3 C 0.333 3.667 4 O -0.400 6.400 5 C -0.145 4.145 6 C 0.318 3.682 7 O -0.416 6.416 8 N -0.327 5.327 9 C -0.023 4.023 10 C -0.155 4.155 11 C -0.110 4.110 12 C 0.048 3.952 13 N -0.335 5.335 14 C -0.348 4.348 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.568 5.568 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.000 4.000 23 C -0.133 4.133 24 C -0.010 4.010 25 C -0.140 4.140 26 C -0.178 4.178 27 C -0.147 4.147 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.239 0.761 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.122 0.878 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.112 0.888 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.653 -4.337 -21.695 23.103 hybrid contribution 0.061 -0.435 1.317 1.388 sum -6.592 -4.772 -20.378 21.943 Atomic orbital electron populations 1.21583 0.78950 1.02514 1.02547 1.45739 1.08047 1.08725 1.75614 1.19468 0.87701 0.83892 0.75651 1.90716 1.69362 1.31202 1.48730 1.22366 0.93654 1.01361 0.97144 1.19871 0.80415 0.84393 0.83545 1.90690 1.37582 1.27878 1.85482 1.48102 1.55839 1.22912 1.05861 1.21926 0.95253 0.84182 1.00953 1.21722 1.00181 0.97972 0.95648 1.22388 0.98693 0.96560 0.93361 1.22229 0.97124 0.92430 0.83391 1.45960 1.23072 1.59866 1.04566 1.19054 1.06026 1.27020 0.82743 0.90407 1.24757 0.97385 1.00262 0.98047 1.69830 1.12184 1.40359 1.34392 0.86090 0.77335 0.77524 0.85082 1.20541 1.21745 1.21833 1.22581 0.92494 0.97589 0.87288 1.21467 0.97484 0.95457 0.98898 1.21749 0.99998 0.93940 0.85267 1.22844 1.01522 0.97374 0.92225 1.22914 1.02992 0.95578 0.96298 1.22914 1.01358 0.93362 0.97097 0.91898 0.91981 0.90479 0.76138 0.89184 0.91512 0.90576 0.91739 0.90981 0.95738 0.93779 0.95179 0.94278 0.89448 0.92062 0.91400 0.89324 0.87786 0.90786 0.89579 0.90364 0.88829 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.71 59.85 0.64 1.27 16 2 N -0.73 -6.54 5.60 -67.08 -0.38 -6.92 16 3 C 0.55 6.11 5.30 -10.99 -0.06 6.05 16 4 O -0.52 -7.09 15.23 5.56 0.08 -7.00 16 5 C -0.14 -1.49 0.56 -156.00 -0.09 -1.58 16 6 C 0.53 6.99 6.47 -10.98 -0.07 6.92 16 7 O -0.54 -8.38 15.48 5.55 0.09 -8.29 16 8 N -0.60 -7.98 2.95 -172.95 -0.51 -8.49 16 9 C 0.10 1.28 5.43 -3.91 -0.02 1.26 16 10 C -0.12 -1.68 5.24 -26.98 -0.14 -1.82 16 11 C -0.11 -1.93 0.77 -154.43 -0.12 -2.05 16 12 C 0.17 3.99 6.64 -3.16 -0.02 3.97 16 13 N -0.61 -15.27 3.53 -179.78 -0.64 -15.91 16 14 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 15 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 17 N -0.92 -27.17 11.39 55.49 0.63 -26.53 16 18 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 C 0.13 2.51 7.72 -3.15 -0.02 2.49 16 23 C -0.09 -1.61 5.21 -26.73 -0.14 -1.75 16 24 C 0.11 1.63 6.31 -3.66 -0.02 1.60 16 25 C -0.10 -0.93 6.92 -25.83 -0.18 -1.10 16 26 C -0.14 -1.18 7.79 -25.83 -0.20 -1.38 16 27 C -0.11 -1.09 5.70 -25.92 -0.15 -1.24 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 3.18 8.71 -40.82 -0.36 2.82 16 32 H 0.09 1.10 3.24 -51.93 -0.17 0.94 16 33 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 37 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.04 0.75 7.41 -51.93 -0.38 0.36 16 41 H 0.09 1.70 8.01 -51.93 -0.42 1.28 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 44 H 0.09 1.31 6.98 -51.93 -0.36 0.95 16 45 H 0.10 1.01 7.65 -51.93 -0.40 0.61 16 46 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.99 6.40 -51.93 -0.33 0.65 16 50 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 LS Contribution 386.73 15.07 5.83 5.83 Total: -1.00 -32.89 386.73 -8.97 -41.86 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.20 Total: 2.32 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.85 Total: 6.00 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.89 Total: -57.85 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.17 Total: -15.30 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.89 -8.97 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495984751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.659 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds