Wall clock time and date at job start Tue Mar 31 2020 18:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 120.00433 * 2 1 4 4 O 1.21273 * 120.00033 * 354.91555 * 3 2 1 5 5 C 1.50701 * 120.00004 * 174.91279 * 3 2 1 6 6 C 1.50706 * 112.84810 * 306.43531 * 5 3 2 7 7 O 1.21288 * 119.99717 * 117.84716 * 6 5 3 8 8 N 1.34772 * 119.99893 * 298.11672 * 6 5 3 9 9 C 1.46880 * 120.46861 * 352.98891 * 8 6 5 10 10 C 1.52857 * 109.01956 * 235.48467 * 9 8 6 11 11 C 1.52665 * 109.17493 * 307.81563 * 10 9 8 12 12 C 1.53481 * 113.62193 * 188.99304 * 11 10 9 13 13 N 1.47672 * 85.98632 * 137.71091 * 12 11 10 14 14 C 1.36932 * 134.45603 * 155.64990 * 13 12 11 15 15 H 1.08003 * 119.99701 * 180.02562 * 14 13 12 16 16 C 1.38817 * 120.00413 * 0.04775 * 14 13 12 17 17 N 1.31623 * 119.99424 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00095 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47030 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47181 * 119.99797 * 18 16 14 21 21 H 1.48499 * 109.46752 * 239.99665 * 18 16 14 22 22 C 1.47660 * 91.08661 * 335.68207 * 13 12 11 23 23 C 1.52671 * 113.18382 * 57.46336 * 11 10 9 24 24 C 1.46882 * 120.46392 * 173.26155 * 8 6 5 25 25 C 1.53784 * 113.61355 * 77.63011 * 5 3 2 26 26 C 1.53949 * 87.01802 * 89.23039 * 25 5 3 27 27 C 1.53775 * 113.61673 * 175.23804 * 5 3 2 28 28 H 1.08999 * 109.46779 * 299.99936 * 1 2 3 29 29 H 1.09004 * 109.47165 * 59.99265 * 1 2 3 30 30 H 1.08996 * 109.47535 * 179.97438 * 1 2 3 31 31 H 0.97008 * 119.99438 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.58595 * 355.31496 * 9 8 6 33 33 H 1.09003 * 109.59092 * 115.74192 * 9 8 6 34 34 H 1.09001 * 109.60976 * 187.84045 * 10 9 8 35 35 H 1.09001 * 109.44445 * 67.69703 * 10 9 8 36 36 H 1.09005 * 113.79249 * 251.97493 * 12 11 10 37 37 H 1.09002 * 113.79221 * 23.44581 * 12 11 10 38 38 H 0.97002 * 119.99556 * 180.02562 * 17 16 14 39 39 H 1.09000 * 113.79472 * 270.05140 * 22 13 12 40 40 H 1.08997 * 113.79360 * 138.58058 * 22 13 12 41 41 H 1.09004 * 109.53335 * 182.51358 * 23 11 10 42 42 H 1.09006 * 109.59535 * 62.33188 * 23 11 10 43 43 H 1.09000 * 109.58952 * 244.26130 * 24 8 6 44 44 H 1.09001 * 109.58758 * 4.54909 * 24 8 6 45 45 H 1.09005 * 113.61371 * 203.74867 * 25 5 3 46 46 H 1.09002 * 113.61417 * 334.65260 * 25 5 3 47 47 H 1.09000 * 113.53811 * 270.80773 * 26 25 5 48 48 H 1.09002 * 113.66858 * 139.93557 * 26 25 5 49 49 H 1.08998 * 113.61458 * 25.34740 * 27 5 3 50 50 H 1.08996 * 113.61620 * 156.25000 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5362 2.2153 -0.0931 5 6 3.6415 1.1696 0.1157 6 6 4.1377 0.3960 1.3102 7 8 4.8412 -0.5792 1.1515 8 7 3.7952 0.7847 2.5544 9 6 3.0693 2.0436 2.7680 10 6 3.8550 2.9110 3.7514 11 6 4.1666 2.0937 5.0027 12 6 4.7610 2.9249 6.1479 13 7 3.8668 2.1528 7.0338 14 6 3.8829 1.8257 8.3634 15 1 3.0852 1.2304 8.7827 16 6 4.9241 2.2596 9.1725 17 7 5.8962 2.9850 8.6614 18 14 4.9462 1.8128 10.9861 19 1 3.7488 0.9962 11.3094 20 1 6.1737 1.0338 11.2891 21 1 4.9336 3.0536 11.8018 22 6 2.9489 1.8741 5.9113 23 6 4.9461 0.8148 4.7066 24 6 4.1480 -0.0417 3.7163 25 6 4.3608 0.8080 -1.1945 26 6 4.3331 2.3101 -1.5303 27 6 4.2672 2.5681 -0.0157 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.9500 -0.8402 -0.0004 32 1 2.9658 2.5712 1.8198 33 1 2.0828 1.8313 3.1800 34 1 3.2616 3.7836 4.0245 35 1 4.7861 3.2345 3.2861 36 1 5.8207 2.7388 6.3223 37 1 4.5171 3.9860 6.0937 38 1 6.6239 3.2879 9.2267 39 1 2.1666 2.6227 5.7866 40 1 2.5685 0.8527 5.8975 41 1 5.0969 0.2576 5.6312 42 1 5.9131 1.0684 4.2721 43 1 3.2390 -0.4041 4.1964 44 1 4.7527 -0.8886 3.3922 45 1 5.3656 0.4122 -1.0462 46 1 3.7597 0.1978 -1.8686 47 1 3.4355 2.6200 -2.0655 48 1 5.2503 2.6716 -1.9953 49 1 3.5906 3.3768 0.2604 50 1 5.2462 2.6545 0.4555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495984751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:52 Heat of formation + Delta-G solvation = -9.804442 kcal Electronic energy + Delta-G solvation = -31112.427680 eV Core-core repulsion = 27141.381888 eV Total energy + Delta-G solvation = -3971.045792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58729 -41.05683 -39.84292 -38.16421 -37.13093 -35.66457 -34.42636 -32.41327 -32.10962 -29.53287 -28.58012 -27.18548 -26.72259 -26.51821 -25.06783 -24.28555 -23.10016 -22.53286 -21.30755 -20.37063 -19.43870 -18.70299 -18.36014 -17.39878 -17.22278 -16.95626 -16.86035 -16.22903 -16.12388 -15.99356 -15.91469 -15.62785 -15.18428 -15.07206 -14.53704 -14.29093 -14.05917 -14.00817 -13.71052 -13.62705 -13.46663 -13.17750 -13.13800 -12.96296 -12.93110 -12.84308 -12.70149 -12.40911 -12.16799 -12.13400 -11.96850 -11.66749 -11.57458 -11.47093 -11.20726 -11.07883 -10.96797 -10.82139 -10.64181 -10.19562 -9.67654 -8.87753 -7.88786 -5.20951 1.27406 1.44231 1.44586 1.45090 1.55204 1.89474 2.11423 2.47675 3.29631 3.31661 3.35753 3.41027 3.47886 3.59759 3.63513 3.78276 3.92232 3.94678 4.12321 4.28142 4.32238 4.36569 4.46846 4.58542 4.61442 4.63157 4.66844 4.71556 4.74515 4.80758 4.85709 4.91228 4.94111 4.97534 4.98987 5.00951 5.04958 5.13259 5.16827 5.28336 5.31269 5.33131 5.37264 5.47636 5.59247 5.73232 5.96703 6.30006 6.35458 6.94410 6.98135 7.05408 7.63225 8.60321 9.28041 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.002962 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.024397 B = 9450.153518 C = 9719.088796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.547 3.453 4 O -0.550 6.550 5 C -0.139 4.139 6 C 0.535 3.465 7 O -0.562 6.562 8 N -0.596 5.596 9 C 0.109 3.891 10 C -0.110 4.110 11 C -0.081 4.081 12 C 0.169 3.831 13 N -0.637 5.637 14 C -0.230 4.230 15 H 0.081 0.919 16 C -0.067 4.067 17 N -0.953 5.953 18 Si 0.974 3.026 19 H -0.266 1.266 20 H -0.293 1.293 21 H -0.294 1.294 22 C 0.129 3.871 23 C -0.088 4.088 24 C 0.124 3.876 25 C -0.098 4.098 26 C -0.130 4.130 27 C -0.113 4.113 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.411 0.589 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.014 0.986 38 H 0.246 0.754 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -5.348 -23.629 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.374 5.374 3 C 0.332 3.668 4 O -0.428 6.428 5 C -0.145 4.145 6 C 0.322 3.678 7 O -0.441 6.441 8 N -0.328 5.328 9 C -0.014 4.014 10 C -0.149 4.149 11 C -0.082 4.082 12 C 0.043 3.957 13 N -0.363 5.363 14 C -0.358 4.358 15 H 0.099 0.901 16 C -0.260 4.260 17 N -0.602 5.602 18 Si 0.803 3.197 19 H -0.190 1.190 20 H -0.220 1.220 21 H -0.222 1.222 22 C 0.005 3.995 23 C -0.127 4.127 24 C 0.001 3.999 25 C -0.136 4.136 26 C -0.167 4.167 27 C -0.151 4.151 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.246 0.754 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.032 0.968 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.113 0.887 49 H 0.107 0.893 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.128 -5.159 -23.418 25.320 hybrid contribution 0.484 -0.215 1.816 1.891 sum -7.644 -5.374 -21.603 23.537 Atomic orbital electron populations 1.21732 0.77778 1.04331 1.02024 1.45788 1.08890 1.08395 1.74333 1.19494 0.87672 0.84087 0.75533 1.90709 1.69737 1.32132 1.50243 1.22423 0.93834 1.01644 0.96644 1.20236 0.79671 0.84040 0.83815 1.90683 1.38589 1.28985 1.85813 1.48114 1.55905 1.22979 1.05776 1.21877 0.94849 0.83633 1.00991 1.21669 1.01087 0.97919 0.94190 1.22095 0.96654 0.96106 0.93375 1.22164 0.95175 0.92488 0.85840 1.46318 1.25102 1.60215 1.04700 1.19435 1.05744 1.26322 0.84308 0.90110 1.25564 0.97371 1.00932 1.02159 1.70021 1.12787 1.41908 1.35492 0.85065 0.77496 0.77025 0.80095 1.18993 1.21999 1.22158 1.22746 0.92833 0.98463 0.85493 1.21344 0.97810 0.95145 0.98365 1.21543 0.99865 0.93398 0.85058 1.22853 1.01183 0.98141 0.91385 1.22857 1.03782 0.94851 0.95198 1.22961 1.01127 0.92587 0.98447 0.92804 0.92086 0.87575 0.75402 0.87948 0.91039 0.89805 0.91004 0.94543 0.96788 0.94464 0.93800 0.93099 0.92345 0.92416 0.90515 0.89378 0.88283 0.89538 0.89663 0.88717 0.89290 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.71 127.77 1.37 2.38 16 2 N -0.72 -11.23 5.60 -484.54 -2.71 -13.94 16 3 C 0.55 11.00 5.30 87.66 0.46 11.47 16 4 O -0.55 -13.80 15.23 -3.01 -0.05 -13.85 16 5 C -0.14 -2.70 0.56 -53.15 -0.03 -2.73 16 6 C 0.53 13.06 6.47 87.66 0.57 13.63 16 7 O -0.56 -16.57 15.48 -3.05 -0.05 -16.62 16 8 N -0.60 -14.87 2.95 -819.48 -2.42 -17.28 16 9 C 0.11 2.57 5.43 86.26 0.47 3.04 16 10 C -0.11 -3.00 5.24 30.44 0.16 -2.84 16 11 C -0.08 -2.85 0.77 -52.04 -0.04 -2.89 16 12 C 0.17 7.98 6.64 86.31 0.57 8.55 16 13 N -0.64 -32.39 3.53 -722.69 -2.55 -34.94 16 14 C -0.23 -12.92 10.70 84.04 0.90 -12.02 16 15 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 16 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 17 N -0.95 -58.07 11.39 21.65 0.25 -57.83 16 18 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 22 C 0.13 5.01 7.72 86.32 0.67 5.67 16 23 C -0.09 -2.99 5.21 30.60 0.16 -2.83 16 24 C 0.12 3.42 6.31 86.42 0.54 3.97 16 25 C -0.10 -1.56 6.92 31.18 0.22 -1.34 16 26 C -0.13 -1.87 7.79 31.18 0.24 -1.62 16 27 C -0.11 -2.03 5.70 31.12 0.18 -1.85 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.41 5.40 8.71 -92.70 -0.81 4.59 16 32 H 0.10 2.27 3.24 -2.39 -0.01 2.26 16 33 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 34 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.04 1.97 7.12 -2.38 -0.02 1.95 16 37 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 38 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 40 H 0.05 1.86 7.41 -2.39 -0.02 1.84 16 41 H 0.06 2.33 8.01 -2.38 -0.02 2.31 16 42 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.08 2.01 7.49 -2.39 -0.02 2.00 16 44 H 0.09 2.50 6.98 -2.39 -0.02 2.49 16 45 H 0.10 1.72 7.65 -2.38 -0.02 1.70 16 46 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.09 1.70 6.40 -2.39 -0.02 1.68 16 50 H 0.10 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -71.91 386.73 1.54 -70.37 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.14 Total: 18.64 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 6.90 Total: 17.16 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -7.43 Total: -123.99 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.09 Total: -30.47 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -71.91 1.54 -70.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495984751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.562 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds