Wall clock time and date at job start Tue Mar 31 2020 18:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 110.99877 * 2 1 4 4 C 1.46900 * 111.00347 * 123.95137 * 2 1 3 5 5 C 1.50698 * 109.47734 * 170.00389 * 4 2 1 6 6 C 1.38360 * 119.85007 * 269.73016 * 5 4 2 7 7 C 1.37961 * 120.14286 * 179.71958 * 6 5 4 8 8 C 1.39580 * 119.84991 * 0.54844 * 7 6 5 9 9 C 1.47842 * 120.13983 * 179.70369 * 8 7 6 10 10 O 1.21561 * 119.99837 * 150.64992 * 9 8 7 11 11 N 1.34775 * 120.00687 * 330.65179 * 9 8 7 12 12 C 1.46504 * 119.99657 * 6.16730 * 11 9 8 13 13 C 1.53005 * 109.46927 * 98.05161 * 12 11 9 14 14 O 1.42896 * 109.46802 * 65.00439 * 13 12 11 15 15 C 1.46500 * 120.00655 * 186.17332 * 11 9 8 16 16 C 1.52990 * 109.47187 * 89.99473 * 15 11 9 17 17 N 1.46500 * 109.47187 * 180.02562 * 16 15 11 18 18 C 1.36935 * 120.00444 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99846 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00446 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99517 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00116 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47143 * 59.99668 * 22 20 18 24 24 H 1.48495 * 109.46881 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46803 * 299.99391 * 22 20 18 26 26 C 1.39571 * 119.71460 * 359.72157 * 8 7 6 27 27 C 1.37959 * 119.85289 * 0.02562 * 26 8 7 28 28 H 1.09004 * 109.47253 * 56.04773 * 1 2 3 29 29 H 1.09003 * 109.47107 * 176.04622 * 1 2 3 30 30 H 1.09001 * 109.47421 * 296.04497 * 1 2 3 31 31 H 1.08994 * 109.47308 * 59.99694 * 3 2 1 32 32 H 1.09005 * 109.47340 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46854 * 299.99465 * 3 2 1 34 34 H 1.09003 * 109.46939 * 290.00476 * 4 2 1 35 35 H 1.08997 * 109.46865 * 49.99728 * 4 2 1 36 36 H 1.07999 * 119.93016 * 359.97438 * 6 5 4 37 37 H 1.07997 * 120.07439 * 180.24922 * 7 6 5 38 38 H 1.08994 * 109.47121 * 218.05445 * 12 11 9 39 39 H 1.09005 * 109.46777 * 338.05992 * 12 11 9 40 40 H 1.08997 * 109.46613 * 185.00212 * 13 12 11 41 41 H 1.08993 * 109.47234 * 305.00316 * 13 12 11 42 42 H 0.96700 * 114.00027 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.47184 * 210.00427 * 15 11 9 44 44 H 1.09005 * 109.46693 * 329.99747 * 15 11 9 45 45 H 1.09006 * 109.47687 * 300.00368 * 16 15 11 46 46 H 1.09005 * 109.47081 * 60.00511 * 16 15 11 47 47 H 0.97006 * 120.00013 * 0.02562 * 17 16 15 48 48 H 0.97001 * 119.99476 * 180.02562 * 21 20 18 49 49 H 1.07995 * 120.07810 * 179.97438 * 26 8 7 50 50 H 1.07997 * 119.93042 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9730 6 6 3.9667 -2.0625 0.3045 7 6 5.3260 -2.2363 0.1453 8 6 6.2130 -1.2950 0.6703 9 6 7.6711 -1.4783 0.5091 10 8 8.4033 -0.5093 0.4562 11 7 8.1887 -2.7195 0.4208 12 6 7.2986 -3.8809 0.3484 13 6 7.1386 -4.3105 -1.1114 14 8 8.3961 -4.7662 -1.6143 15 6 9.6414 -2.9075 0.3973 16 6 10.1577 -3.0709 1.8281 17 7 11.6105 -3.2583 1.8047 18 6 12.2982 -3.4270 2.9768 19 1 11.7695 -3.4224 3.9185 20 6 13.6748 -3.6041 2.9546 21 7 14.3191 -3.6102 1.8068 22 14 14.6127 -3.8350 4.5535 23 1 14.1069 -5.0427 5.2541 24 1 16.0585 -4.0031 4.2593 25 1 14.4182 -2.6433 5.4179 26 6 5.7173 -0.1803 1.3484 27 6 4.3556 -0.0158 1.4961 28 1 -0.3634 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 -0.3634 0.4512 0.9233 31 1 1.6459 1.8948 0.8899 32 1 3.0850 1.3425 -0.0005 33 1 1.6459 1.8948 -0.8901 34 1 1.7975 -0.2247 2.0628 35 1 1.5090 -1.7405 1.1757 36 1 3.2795 -2.7925 -0.0971 37 1 5.7032 -3.1011 -0.3802 38 1 7.7252 -4.7021 0.9242 39 1 6.3236 -3.6174 0.7585 40 1 6.4082 -5.1171 -1.1747 41 1 6.7959 -3.4626 -1.7042 42 1 8.3694 -5.0555 -2.5366 43 1 9.8830 -3.7997 -0.1803 44 1 10.1128 -2.0386 -0.0621 45 1 9.9161 -2.1786 2.4058 46 1 9.6864 -3.9397 2.2875 47 1 12.0854 -3.2628 0.9588 48 1 15.2810 -3.7343 1.7913 49 1 6.3983 0.5514 1.7573 50 1 3.9707 0.8460 2.0209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501499634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:29 Heat of formation + Delta-G solvation = -1.000163 kcal Electronic energy + Delta-G solvation = -28987.063310 eV Core-core repulsion = 25016.399300 eV Total energy + Delta-G solvation = -3970.664010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77898 -39.11015 -37.32839 -37.21535 -35.52609 -34.39891 -32.45929 -31.58989 -30.97949 -29.50745 -28.12433 -27.97557 -26.82739 -24.06472 -23.36353 -22.91220 -22.80085 -21.62601 -21.11086 -19.48725 -17.92802 -17.32027 -17.10152 -16.50801 -16.14240 -15.92100 -15.74369 -15.50022 -15.01486 -14.73746 -14.45225 -14.42836 -14.16282 -13.78225 -13.62668 -13.43302 -13.19577 -13.12334 -12.82693 -12.79241 -12.62674 -12.45198 -12.30522 -12.06087 -11.96023 -11.72023 -11.44443 -11.15032 -10.98959 -10.85313 -10.82305 -10.54124 -10.15440 -10.07366 -9.75875 -9.60870 -9.14738 -9.08559 -8.78300 -8.75132 -8.42043 -6.83760 -5.67619 -2.96326 0.68361 1.12351 2.77568 3.06928 3.46488 3.50317 3.53798 3.55641 3.79899 4.00587 4.29038 4.41053 4.52288 4.68405 4.70361 4.71715 4.83691 4.89153 4.91167 4.98588 5.03504 5.09746 5.10937 5.15545 5.24158 5.27699 5.34981 5.40277 5.55408 5.56904 5.63652 5.66699 5.75544 5.86570 6.01308 6.04187 6.15362 6.17892 6.22868 6.34643 6.49199 6.54222 6.61869 6.67899 6.86451 7.03617 7.47437 7.61157 7.77186 8.31151 8.51046 9.61539 10.19259 10.54775 11.55279 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002255 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.218337 B =12411.619396 C =13246.257338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.017 3.983 4 C 0.090 3.910 5 C -0.063 4.063 6 C -0.106 4.106 7 C -0.122 4.122 8 C -0.120 4.120 9 C 0.550 3.450 10 O -0.528 6.528 11 N -0.590 5.590 12 C 0.074 3.926 13 C 0.052 3.948 14 O -0.557 6.557 15 C 0.109 3.891 16 C 0.143 3.857 17 N -0.729 5.729 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.062 4.062 27 C -0.120 4.120 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.153 0.847 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.378 0.622 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.019 0.981 46 H 0.017 0.983 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.134 0.866 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.972 2.775 -7.027 32.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.131 4.131 4 C -0.037 4.037 5 C -0.064 4.064 6 C -0.124 4.124 7 C -0.140 4.140 8 C -0.124 4.124 9 C 0.338 3.662 10 O -0.405 6.405 11 N -0.322 5.322 12 C -0.049 4.049 13 C -0.027 4.027 14 O -0.363 6.363 15 C -0.013 4.013 16 C 0.015 3.985 17 N -0.373 5.373 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.081 4.081 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.225 0.775 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.152 0.848 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -31.173 3.193 -6.706 32.045 hybrid contribution 0.192 0.095 0.794 0.822 sum -30.981 3.289 -5.912 31.711 Atomic orbital electron populations 1.22401 0.86957 1.02401 1.00659 1.61990 1.07782 1.14292 1.42471 1.22523 1.01724 0.88276 1.00621 1.21113 0.91434 0.99166 0.91974 1.19865 0.94728 0.94706 0.97068 1.20948 0.94838 0.97805 0.98840 1.22271 0.93390 0.98765 0.99537 1.20030 0.93227 0.96883 1.02237 1.18387 0.87470 0.83248 0.77059 1.90811 1.61036 1.39062 1.49578 1.47654 1.07669 1.04956 1.71900 1.22537 0.96981 0.89851 0.95558 1.22736 0.86631 0.97801 0.95485 1.86615 1.31222 1.86273 1.32161 1.21796 0.77101 1.03580 0.98835 1.20902 0.86564 0.97490 0.93565 1.42187 1.00554 1.87623 1.06963 1.19169 0.89869 1.41351 0.86392 0.91322 1.24749 0.96448 1.03044 0.96869 1.69663 1.07904 1.57105 1.23524 0.86234 0.78959 0.77897 0.82902 1.21325 1.21676 1.21303 1.21221 0.95295 0.95794 0.95820 1.21009 0.92790 0.99158 1.00860 0.91164 0.91215 0.95585 0.95550 0.90552 0.91295 0.93659 0.89625 0.85380 0.83024 0.89205 0.86284 0.92432 0.93168 0.77528 0.88800 0.89961 0.96353 0.96566 0.78201 0.93506 0.84780 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.57 60.06 0.57 0.70 16 2 N -0.54 -3.80 5.01 -252.72 -1.27 -5.07 16 3 C 0.02 0.11 9.25 60.07 0.56 0.67 16 4 C 0.09 0.60 5.11 -4.98 -0.03 0.57 16 5 C -0.06 -0.52 4.90 -104.53 -0.51 -1.04 16 6 C -0.11 -0.87 9.68 -39.64 -0.38 -1.25 16 7 C -0.12 -1.17 7.49 -39.18 -0.29 -1.47 16 8 C -0.12 -1.54 5.59 -104.97 -0.59 -2.13 16 9 C 0.55 9.16 7.47 -12.33 -0.09 9.07 16 10 O -0.53 -10.99 16.25 5.31 0.09 -10.91 16 11 N -0.59 -9.23 2.48 -174.80 -0.43 -9.67 16 12 C 0.07 0.84 5.34 -4.04 -0.02 0.81 16 13 C 0.05 0.48 6.15 37.16 0.23 0.70 16 14 O -0.56 -6.28 11.78 -35.23 -0.42 -6.69 16 15 C 0.11 2.09 5.40 -4.05 -0.02 2.07 16 16 C 0.14 3.26 6.58 -4.05 -0.03 3.24 16 17 N -0.73 -20.05 5.60 -59.91 -0.34 -20.39 16 18 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 19 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -29.40 13.06 55.49 0.72 -28.67 16 22 Si 0.91 23.33 29.55 -169.99 -5.02 18.31 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C -0.06 -0.74 9.60 -39.19 -0.38 -1.11 16 27 C -0.12 -1.10 7.88 -39.64 -0.31 -1.41 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 30 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.59 5.89 -51.93 -0.31 0.29 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.28 8.06 -51.93 -0.42 -0.14 16 35 H 0.09 0.47 8.00 -51.93 -0.42 0.05 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.15 1.22 2.58 -52.49 -0.14 1.09 16 38 H 0.09 1.08 8.13 -51.93 -0.42 0.66 16 39 H 0.12 1.09 4.05 -52.00 -0.21 0.88 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 0.44 7.24 -51.93 -0.38 0.06 16 42 H 0.38 2.53 9.12 45.56 0.42 2.95 16 43 H 0.09 1.78 6.41 -51.93 -0.33 1.44 16 44 H 0.08 1.75 7.35 -51.93 -0.38 1.37 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.38 11.00 7.67 -40.82 -0.31 10.69 16 48 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 49 H 0.13 1.66 7.92 -52.49 -0.42 1.24 16 50 H 0.12 0.92 7.98 -52.49 -0.42 0.50 16 LS Contribution 400.24 15.07 6.03 6.03 Total: -1.00 -37.30 400.24 -9.25 -46.55 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.08 Total: 8.84 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.54 Total: 1.66 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -1.31 Total: -63.80 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.33 Total: -17.60 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.30 -9.25 -46.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501499634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.554 kcal (2) G-P(sol) polarization free energy of solvation -37.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds