Wall clock time and date at job start Tue Mar 31 2020 18:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 110.99877 * 2 1 4 4 C 1.46900 * 111.00347 * 123.95137 * 2 1 3 5 5 C 1.50698 * 109.47734 * 170.00389 * 4 2 1 6 6 C 1.38360 * 119.85007 * 269.73016 * 5 4 2 7 7 C 1.37961 * 120.14286 * 179.71958 * 6 5 4 8 8 C 1.39580 * 119.84991 * 0.54844 * 7 6 5 9 9 C 1.47842 * 120.13983 * 179.70369 * 8 7 6 10 10 O 1.21561 * 119.99837 * 150.64992 * 9 8 7 11 11 N 1.34775 * 120.00687 * 330.65179 * 9 8 7 12 12 C 1.46504 * 119.99657 * 6.16730 * 11 9 8 13 13 C 1.53005 * 109.46927 * 98.05161 * 12 11 9 14 14 O 1.42896 * 109.46802 * 65.00439 * 13 12 11 15 15 C 1.46500 * 120.00655 * 186.17332 * 11 9 8 16 16 C 1.52990 * 109.47187 * 89.99473 * 15 11 9 17 17 N 1.46500 * 109.47187 * 180.02562 * 16 15 11 18 18 C 1.36935 * 120.00444 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99846 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00446 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99517 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00116 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47143 * 59.99668 * 22 20 18 24 24 H 1.48495 * 109.46881 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46803 * 299.99391 * 22 20 18 26 26 C 1.39571 * 119.71460 * 359.72157 * 8 7 6 27 27 C 1.37959 * 119.85289 * 0.02562 * 26 8 7 28 28 H 1.09004 * 109.47253 * 56.04773 * 1 2 3 29 29 H 1.09003 * 109.47107 * 176.04622 * 1 2 3 30 30 H 1.09001 * 109.47421 * 296.04497 * 1 2 3 31 31 H 1.08994 * 109.47308 * 59.99694 * 3 2 1 32 32 H 1.09005 * 109.47340 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46854 * 299.99465 * 3 2 1 34 34 H 1.09003 * 109.46939 * 290.00476 * 4 2 1 35 35 H 1.08997 * 109.46865 * 49.99728 * 4 2 1 36 36 H 1.07999 * 119.93016 * 359.97438 * 6 5 4 37 37 H 1.07997 * 120.07439 * 180.24922 * 7 6 5 38 38 H 1.08994 * 109.47121 * 218.05445 * 12 11 9 39 39 H 1.09005 * 109.46777 * 338.05992 * 12 11 9 40 40 H 1.08997 * 109.46613 * 185.00212 * 13 12 11 41 41 H 1.08993 * 109.47234 * 305.00316 * 13 12 11 42 42 H 0.96700 * 114.00027 * 179.97438 * 14 13 12 43 43 H 1.08997 * 109.47184 * 210.00427 * 15 11 9 44 44 H 1.09005 * 109.46693 * 329.99747 * 15 11 9 45 45 H 1.09006 * 109.47687 * 300.00368 * 16 15 11 46 46 H 1.09005 * 109.47081 * 60.00511 * 16 15 11 47 47 H 0.97006 * 120.00013 * 0.02562 * 17 16 15 48 48 H 0.97001 * 119.99476 * 180.02562 * 21 20 18 49 49 H 1.07995 * 120.07810 * 179.97438 * 26 8 7 50 50 H 1.07997 * 119.93042 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9730 6 6 3.9667 -2.0625 0.3045 7 6 5.3260 -2.2363 0.1453 8 6 6.2130 -1.2950 0.6703 9 6 7.6711 -1.4783 0.5091 10 8 8.4033 -0.5093 0.4562 11 7 8.1887 -2.7195 0.4208 12 6 7.2986 -3.8809 0.3484 13 6 7.1386 -4.3105 -1.1114 14 8 8.3961 -4.7662 -1.6143 15 6 9.6414 -2.9075 0.3973 16 6 10.1577 -3.0709 1.8281 17 7 11.6105 -3.2583 1.8047 18 6 12.2982 -3.4270 2.9768 19 1 11.7695 -3.4224 3.9185 20 6 13.6748 -3.6041 2.9546 21 7 14.3191 -3.6102 1.8068 22 14 14.6127 -3.8350 4.5535 23 1 14.1069 -5.0427 5.2541 24 1 16.0585 -4.0031 4.2593 25 1 14.4182 -2.6433 5.4179 26 6 5.7173 -0.1803 1.3484 27 6 4.3556 -0.0158 1.4961 28 1 -0.3634 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 -0.3634 0.4512 0.9233 31 1 1.6459 1.8948 0.8899 32 1 3.0850 1.3425 -0.0005 33 1 1.6459 1.8948 -0.8901 34 1 1.7975 -0.2247 2.0628 35 1 1.5090 -1.7405 1.1757 36 1 3.2795 -2.7925 -0.0971 37 1 5.7032 -3.1011 -0.3802 38 1 7.7252 -4.7021 0.9242 39 1 6.3236 -3.6174 0.7585 40 1 6.4082 -5.1171 -1.1747 41 1 6.7959 -3.4626 -1.7042 42 1 8.3694 -5.0555 -2.5366 43 1 9.8830 -3.7997 -0.1803 44 1 10.1128 -2.0386 -0.0621 45 1 9.9161 -2.1786 2.4058 46 1 9.6864 -3.9397 2.2875 47 1 12.0854 -3.2628 0.9588 48 1 15.2810 -3.7343 1.7913 49 1 6.3983 0.5514 1.7573 50 1 3.9707 0.8460 2.0209 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501499634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:28 Heat of formation + Delta-G solvation = -30.054736 kcal Electronic energy + Delta-G solvation = -28988.323211 eV Core-core repulsion = 25016.399300 eV Total energy + Delta-G solvation = -3971.923911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82320 -39.97958 -38.33784 -37.86556 -37.06121 -36.00686 -33.86143 -32.74299 -32.22844 -30.62895 -29.41223 -28.45044 -27.88208 -25.78100 -24.37572 -23.91961 -23.63988 -23.07862 -21.93389 -20.68174 -19.24331 -18.76663 -18.32922 -17.61370 -17.00529 -16.77468 -16.55487 -16.39949 -16.29550 -15.90976 -15.57296 -15.40303 -15.29043 -15.09050 -15.04128 -14.77819 -14.47842 -14.45934 -13.91670 -13.64427 -13.19712 -13.19390 -13.06589 -12.98926 -12.93472 -12.79620 -12.58559 -12.57044 -12.43769 -12.20582 -12.17485 -12.15308 -11.89550 -11.77155 -11.00382 -10.99205 -10.86608 -9.96926 -9.86552 -9.69804 -9.26559 -9.09643 -7.98792 -5.30643 -0.17335 0.37034 1.44012 1.49297 1.55283 1.64638 1.87225 2.54350 2.66506 3.23212 3.28712 3.33498 3.38133 3.76883 3.81634 3.95144 4.02928 4.05430 4.12836 4.23017 4.24584 4.31065 4.31600 4.40877 4.43810 4.46135 4.53677 4.58026 4.61776 4.62907 4.73663 4.79340 4.86037 4.86401 5.01633 5.03502 5.05191 5.06367 5.08701 5.26870 5.33558 5.39469 5.49657 5.53407 5.88258 6.03993 6.10097 6.21568 6.32549 6.96956 7.03442 7.27320 7.98116 8.25139 9.24393 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.002255 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.218337 B =12411.619396 C =13246.257338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.016 3.984 4 C 0.091 3.909 5 C -0.055 4.055 6 C -0.097 4.097 7 C -0.114 4.114 8 C -0.144 4.144 9 C 0.544 3.456 10 O -0.586 6.586 11 N -0.588 5.588 12 C 0.064 3.936 13 C 0.053 3.947 14 O -0.590 6.590 15 C 0.129 3.871 16 C 0.151 3.849 17 N -0.741 5.741 18 C -0.255 4.255 19 H 0.073 0.927 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.983 3.017 23 H -0.273 1.273 24 H -0.290 1.290 25 H -0.280 1.280 26 C -0.081 4.081 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.105 0.895 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.396 0.604 43 H 0.100 0.900 44 H 0.053 0.947 45 H -0.003 1.003 46 H 0.028 0.972 47 H 0.375 0.625 48 H 0.254 0.746 49 H 0.114 0.886 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.418 1.163 -6.731 36.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.278 5.278 3 C -0.132 4.132 4 C -0.036 4.036 5 C -0.056 4.056 6 C -0.116 4.116 7 C -0.132 4.132 8 C -0.147 4.147 9 C 0.335 3.665 10 O -0.468 6.468 11 N -0.318 5.318 12 C -0.057 4.057 13 C -0.025 4.025 14 O -0.398 6.398 15 C 0.005 3.995 16 C 0.023 3.977 17 N -0.384 5.384 18 C -0.387 4.387 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.617 5.617 22 Si 0.810 3.190 23 H -0.198 1.198 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.100 4.100 27 C -0.134 4.134 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.102 0.898 39 H 0.163 0.837 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.246 0.754 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.015 0.985 46 H 0.046 0.954 47 H 0.207 0.793 48 H 0.063 0.937 49 H 0.132 0.868 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -34.693 1.545 -6.417 35.316 hybrid contribution 1.120 0.625 0.675 1.449 sum -33.573 2.170 -5.743 34.130 Atomic orbital electron populations 1.22442 0.85700 1.03232 1.00991 1.61996 1.08967 1.14175 1.42650 1.22500 1.00858 0.88687 1.01127 1.21169 0.89947 1.00309 0.92161 1.20193 0.95822 0.94064 0.95545 1.21327 0.94447 0.98128 0.97653 1.22396 0.93642 0.98291 0.98833 1.19805 0.90961 0.98910 1.05045 1.19108 0.89120 0.82622 0.75696 1.90765 1.62807 1.40875 1.52320 1.47708 1.06484 1.06347 1.71307 1.22975 0.97068 0.87848 0.97834 1.22812 0.86807 0.99451 0.93428 1.86547 1.32763 1.86582 1.33939 1.21317 0.79635 1.02385 0.96156 1.20925 0.84443 0.96615 0.95714 1.42364 1.02339 1.87656 1.06083 1.19571 0.90634 1.41238 0.87229 0.90903 1.25697 0.97343 1.02995 1.00653 1.69834 1.07988 1.58045 1.25842 0.85091 0.77125 0.78271 0.78507 1.19835 1.21566 1.20580 1.21194 0.96399 0.95581 0.96873 1.21147 0.91572 0.99985 1.00693 0.90945 0.90131 0.95186 0.94924 0.91926 0.91013 0.93101 0.87675 0.81962 0.81263 0.89779 0.83718 0.88091 0.92674 0.75381 0.88200 0.92831 0.98478 0.95439 0.79305 0.93721 0.86838 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 127.69 1.22 1.39 16 2 N -0.55 -6.09 5.01 -953.46 -4.78 -10.86 16 3 C 0.02 0.19 9.25 127.69 1.18 1.37 16 4 C 0.09 0.87 5.11 85.56 0.44 1.31 16 5 C -0.06 -0.76 4.90 -19.81 -0.10 -0.86 16 6 C -0.10 -1.22 9.68 22.23 0.22 -1.01 16 7 C -0.11 -1.93 7.49 22.53 0.17 -1.76 16 8 C -0.14 -3.71 5.59 -20.09 -0.11 -3.82 16 9 C 0.54 19.05 7.47 86.79 0.65 19.70 16 10 O -0.59 -26.50 16.25 -3.91 -0.06 -26.56 16 11 N -0.59 -18.88 2.48 -825.22 -2.04 -20.93 16 12 C 0.06 1.35 5.34 86.38 0.46 1.81 16 13 C 0.05 0.83 6.15 71.98 0.44 1.27 16 14 O -0.59 -12.48 11.78 -148.98 -1.76 -14.24 16 15 C 0.13 5.19 5.40 86.38 0.47 5.66 16 16 C 0.15 7.16 6.58 86.38 0.57 7.73 16 17 N -0.74 -42.30 5.60 -343.45 -1.92 -44.23 16 18 C -0.26 -15.51 9.99 84.03 0.84 -14.67 16 19 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.07 -4.53 5.50 84.86 0.47 -4.07 16 21 N -0.97 -62.14 13.06 21.65 0.28 -61.86 16 22 Si 0.98 48.30 29.55 68.60 2.03 50.33 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 25 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 26 C -0.08 -1.99 9.60 22.53 0.22 -1.78 16 27 C -0.12 -2.00 7.88 22.23 0.18 -1.83 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 29 H 0.08 0.41 8.12 -2.39 -0.02 0.39 16 30 H 0.03 0.19 8.14 -2.39 -0.02 0.18 16 31 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.90 5.89 -2.38 -0.01 0.88 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.46 8.06 -2.39 -0.02 0.44 16 35 H 0.11 0.64 8.00 -2.39 -0.02 0.62 16 36 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.17 2.18 2.58 -2.91 -0.01 2.17 16 38 H 0.08 1.90 8.13 -2.39 -0.02 1.88 16 39 H 0.15 2.29 4.05 -2.46 -0.01 2.28 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.82 7.24 -2.39 -0.02 0.80 16 42 H 0.40 4.69 9.12 -74.06 -0.68 4.01 16 43 H 0.10 3.91 6.41 -2.39 -0.02 3.89 16 44 H 0.05 2.46 7.35 -2.38 -0.02 2.44 16 45 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 46 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.38 22.45 7.67 -92.70 -0.71 21.74 16 48 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 49 H 0.11 3.14 7.92 -2.91 -0.02 3.12 16 50 H 0.14 1.90 7.98 -2.91 -0.02 1.88 16 Total: -1.00 -84.39 400.24 -1.38 -85.76 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.42 Total: 32.12 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 7.30 Total: 10.45 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -8.46 Total: -137.87 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.82 Total: -40.80 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.33 kcal Total: -84.39 -1.38 -85.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501499634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.710 kcal (2) G-P(sol) polarization free energy of solvation -84.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds