Wall clock time and date at job start Tue Mar 31 2020 18:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 119.99891 * 2 1 4 4 O 1.21608 * 120.00337 * 179.97438 * 3 2 1 5 5 C 1.47105 * 119.99914 * 359.97438 * 3 2 1 6 6 C 1.32998 * 120.00135 * 180.02562 * 5 3 2 7 7 C 1.51402 * 136.31851 * 180.02562 * 6 5 3 8 8 C 1.53670 * 87.41372 * 153.98868 * 7 6 5 9 9 C 1.51404 * 136.31505 * 359.97438 * 6 5 3 10 10 C 1.46498 * 120.00404 * 179.97438 * 2 1 3 11 11 H 1.09005 * 109.46974 * 354.39400 * 10 2 1 12 12 C 1.53002 * 109.47218 * 234.39846 * 10 2 1 13 13 N 1.46896 * 109.47246 * 54.99844 * 12 10 2 14 14 C 1.46896 * 110.99884 * 180.02562 * 13 12 10 15 15 C 1.50708 * 109.47188 * 179.97438 * 14 13 12 16 16 O 1.21295 * 119.99717 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99804 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99512 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00504 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99922 * 179.97438 * 18 17 15 21 21 N 1.31419 * 120.00262 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47076 * 89.99350 * 22 20 18 24 24 H 1.48499 * 109.47148 * 210.00243 * 22 20 18 25 25 H 1.48506 * 109.46611 * 329.99994 * 22 20 18 26 26 C 1.52997 * 109.47404 * 114.39542 * 10 2 1 27 27 C 1.53003 * 117.49792 * 2.57538 * 26 10 2 28 28 C 1.53006 * 117.49674 * 293.91728 * 26 10 2 29 29 H 1.09000 * 109.46629 * 84.74386 * 1 2 3 30 30 H 1.09005 * 109.46655 * 204.73452 * 1 2 3 31 31 H 1.08991 * 109.47148 * 324.73835 * 1 2 3 32 32 H 1.07999 * 119.99846 * 359.97438 * 5 3 2 33 33 H 1.09004 * 113.56125 * 268.62525 * 7 6 5 34 34 H 1.09005 * 113.56100 * 39.35794 * 7 6 5 35 35 H 1.08997 * 113.82668 * 139.84510 * 8 7 6 36 36 H 1.08998 * 113.82808 * 271.43110 * 8 7 6 37 37 H 1.09007 * 113.55988 * 320.64174 * 9 6 5 38 38 H 1.08997 * 113.56528 * 91.37442 * 9 6 5 39 39 H 1.09002 * 109.47237 * 174.99672 * 12 10 2 40 40 H 1.09000 * 109.46813 * 294.99444 * 12 10 2 41 41 H 1.00897 * 111.00340 * 56.04496 * 13 12 10 42 42 H 1.08998 * 109.47411 * 299.99945 * 14 13 12 43 43 H 1.09003 * 109.47413 * 59.99957 * 14 13 12 44 44 H 0.96998 * 120.00692 * 359.97438 * 17 15 14 45 45 H 0.96995 * 120.00189 * 179.97438 * 21 20 18 46 46 H 1.08994 * 115.54968 * 148.25051 * 26 10 2 47 47 H 1.09003 * 117.49482 * 0.02562 * 27 26 10 48 48 H 1.08995 * 117.49826 * 145.02188 * 27 26 10 49 49 H 1.08999 * 117.49936 * 214.97821 * 28 26 10 50 50 H 1.08999 * 117.49866 * 359.97389 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3550 1.1673 0.0005 5 6 1.4033 2.4411 -0.0006 6 6 2.0682 3.5930 -0.0011 7 6 1.7101 5.0640 -0.0013 8 6 3.0672 5.3232 0.6714 9 6 3.5213 4.0184 -0.0008 10 6 2.1976 -1.2687 0.0006 11 1 1.4936 -2.0947 0.1013 12 6 3.1799 -1.2899 1.1735 13 7 2.4544 -1.0319 2.4245 14 6 3.3679 -1.0442 3.5748 15 6 2.5896 -0.7759 4.8372 16 8 1.3919 -0.5920 4.7837 17 7 3.2247 -0.7392 6.0254 18 6 2.5165 -0.4956 7.1738 19 1 1.4498 -0.3335 7.1264 20 6 3.1711 -0.4584 8.3989 21 7 4.4688 -0.6571 8.4569 22 14 2.2062 -0.1272 9.9638 23 1 1.7340 -1.4137 10.5358 24 1 3.0798 0.5612 10.9477 25 1 1.0375 0.7343 9.6517 26 6 2.9686 -1.4130 -1.3130 27 6 2.8952 -0.2518 -2.3066 28 6 2.1523 -1.5579 -2.5990 29 1 -0.3632 0.0941 -1.0234 30 1 -0.3633 -0.9334 0.4300 31 1 -0.3633 0.8390 0.5932 32 1 0.3233 2.4411 -0.0014 33 1 1.6299 5.4928 -1.0002 34 1 0.8566 5.3047 0.6326 35 1 3.5797 6.2110 0.3011 36 1 3.0366 5.2698 1.7596 37 1 4.1563 3.3998 0.6335 38 1 3.9332 4.1631 -0.9995 39 1 3.6607 -2.2667 1.2271 40 1 3.9372 -0.5197 1.0271 41 1 1.7043 -1.6948 2.5509 42 1 3.8504 -2.0190 3.6453 43 1 4.1262 -0.2720 3.4449 44 1 4.1825 -0.8859 6.0682 45 1 4.9258 -0.6307 9.3120 46 1 3.9081 -1.9618 -1.2488 47 1 2.2979 0.6152 -2.0241 48 1 3.7863 -0.0369 -2.8962 49 1 2.5551 -2.2016 -3.3810 50 1 1.0661 -1.5508 -2.5091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507005556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:07 Heat of formation + Delta-G solvation = 16.387539 kcal Electronic energy + Delta-G solvation = -29743.746736 eV Core-core repulsion = 25773.836714 eV Total energy + Delta-G solvation = -3969.910023 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.52495 -38.73776 -38.14596 -36.89276 -35.36821 -34.53026 -33.75008 -31.27029 -31.04067 -29.52326 -26.67148 -26.13862 -25.81697 -24.21658 -23.40801 -22.50431 -22.03050 -21.10594 -19.42932 -19.00740 -17.83496 -17.74110 -16.87677 -16.49929 -16.29603 -15.64873 -15.51665 -15.22583 -14.85967 -14.49588 -14.22059 -14.17500 -13.96135 -13.59851 -13.28582 -13.17670 -12.97546 -12.69643 -12.55547 -12.45563 -12.03120 -11.89915 -11.75076 -11.73134 -11.46376 -11.41872 -11.38588 -11.12625 -11.01446 -10.99283 -10.53336 -10.37586 -10.35652 -10.18311 -10.12510 -9.46660 -9.22424 -9.14379 -8.47169 -8.32996 -7.93714 -7.86903 -6.37414 -3.78128 1.45544 3.06718 3.20034 3.28132 3.34300 3.53597 3.74919 3.97555 4.14629 4.24717 4.34442 4.42521 4.67175 4.81153 4.84045 4.90435 4.99319 5.05470 5.14912 5.20261 5.27927 5.30781 5.37366 5.43102 5.47862 5.50403 5.54281 5.57669 5.62044 5.69369 5.74526 5.75110 5.87373 5.92903 5.93165 6.01590 6.09878 6.11162 6.14239 6.21717 6.27443 6.35025 6.61737 6.75081 7.34149 7.58760 7.61396 7.81317 8.11149 8.49274 8.66543 9.22267 9.59857 10.11652 10.80513 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.003047 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.988944 B = 9188.466614 C =10763.224604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.596 5.596 3 C 0.567 3.433 4 O -0.532 6.532 5 C -0.198 4.198 6 C -0.064 4.064 7 C -0.110 4.110 8 C -0.143 4.143 9 C -0.104 4.104 10 C 0.188 3.812 11 H 0.085 0.915 12 C 0.041 3.959 13 N -0.659 5.659 14 C 0.054 3.946 15 C 0.444 3.556 16 O -0.584 6.584 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.184 4.184 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.102 0.898 41 H 0.341 0.659 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 3.884 -22.655 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.328 5.328 3 C 0.358 3.642 4 O -0.410 6.410 5 C -0.219 4.219 6 C -0.065 4.065 7 C -0.146 4.146 8 C -0.181 4.181 9 C -0.140 4.140 10 C 0.084 3.916 11 H 0.103 0.897 12 C -0.089 4.089 13 N -0.291 5.291 14 C -0.078 4.078 15 C 0.229 3.771 16 O -0.468 6.468 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.175 4.175 27 C -0.192 4.192 28 C -0.221 4.221 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.147 0.853 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.120 0.880 41 H 0.159 0.841 42 H 0.058 0.942 43 H 0.102 0.898 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.127 0.873 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.638 4.685 -22.566 23.333 hybrid contribution 0.187 -1.022 1.100 1.513 sum -3.451 3.663 -21.466 22.048 Atomic orbital electron populations 1.21779 0.79785 1.03729 1.00655 1.47439 1.06329 1.05257 1.73780 1.18012 0.87109 0.83441 0.75589 1.90695 1.13482 1.87204 1.49635 1.21731 0.99677 0.91060 1.09415 1.23393 0.98194 0.93920 0.91026 1.22339 0.98787 0.91957 1.01559 1.22774 0.96441 0.98108 1.00729 1.22227 0.94298 0.95985 1.01538 1.20490 0.93189 0.85382 0.92519 0.89691 1.22469 0.97119 1.00519 0.88825 1.59939 1.11932 1.57130 1.00079 1.21623 0.95326 1.00319 0.90573 1.19841 0.88427 0.84407 0.84395 1.90501 1.14942 1.54898 1.86465 1.41865 1.10606 1.62508 1.05230 1.19690 0.94371 1.45192 0.83501 0.88010 1.25257 0.95783 0.97529 0.99440 1.69618 1.07845 1.50039 1.26898 0.85868 0.79161 0.78534 0.80774 1.20464 1.20939 1.19436 1.22548 1.00875 1.03914 0.90149 1.22918 1.02134 0.92347 1.01847 1.22993 0.98727 1.01359 0.99015 0.93386 0.90974 0.90929 0.85288 0.88460 0.90500 0.90649 0.89522 0.89354 0.88831 0.95304 0.87989 0.84054 0.94196 0.89765 0.77486 0.91925 0.87347 0.88719 0.89454 0.89217 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.01 59.85 0.60 1.41 16 2 N -0.60 -7.26 1.96 -175.33 -0.34 -7.61 16 3 C 0.57 8.02 4.75 -12.66 -0.06 7.96 16 4 O -0.53 -8.71 11.32 5.27 0.06 -8.65 16 5 C -0.20 -2.48 9.21 -37.80 -0.35 -2.83 16 6 C -0.06 -0.75 6.92 -100.48 -0.70 -1.45 16 7 C -0.11 -0.99 7.95 -27.41 -0.22 -1.21 16 8 C -0.14 -1.39 8.18 -26.06 -0.21 -1.60 16 9 C -0.10 -1.20 7.01 -27.42 -0.19 -1.39 16 10 C 0.19 2.24 2.64 -67.93 -0.18 2.06 16 11 H 0.09 0.90 7.70 -51.93 -0.40 0.50 16 12 C 0.04 0.58 4.74 -3.82 -0.02 0.56 16 13 N -0.66 -11.39 5.85 -115.06 -0.67 -12.06 16 14 C 0.05 1.04 6.17 -4.97 -0.03 1.01 16 15 C 0.44 10.92 7.82 -10.98 -0.09 10.84 16 16 O -0.58 -16.20 15.78 5.54 0.09 -16.11 16 17 N -0.57 -14.87 5.29 -10.96 -0.06 -14.93 16 18 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 19 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 20 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 21 N -0.90 -25.15 13.05 55.50 0.72 -24.43 16 22 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 C -0.16 -1.68 5.33 -90.62 -0.48 -2.17 16 27 C -0.16 -1.72 8.45 -26.69 -0.23 -1.94 16 28 C -0.18 -1.68 10.24 -26.69 -0.27 -1.96 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.65 7.77 -51.93 -0.40 0.25 16 31 H 0.07 0.72 6.41 -51.93 -0.33 0.38 16 32 H 0.13 1.33 6.34 -52.49 -0.33 1.00 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.24 7.48 -51.93 -0.39 0.85 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 1.69 5.97 -51.93 -0.31 1.38 16 41 H 0.34 5.90 8.43 -39.29 -0.33 5.57 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 44 H 0.39 9.93 7.90 -40.82 -0.32 9.61 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.11 1.15 8.07 -51.93 -0.42 0.73 16 47 H 0.09 1.16 5.15 -51.93 -0.27 0.90 16 48 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 403.09 15.07 6.07 6.07 Total: -1.00 -33.10 403.09 -9.91 -43.01 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -8.09 Total: 17.16 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -2.66 Total: 1.13 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.35 Total: -59.02 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.15 Total: -24.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.10 -9.91 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507005556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.397 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds