Wall clock time and date at job start Tue Mar 31 2020 18:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 119.99891 * 2 1 4 4 O 1.21608 * 120.00337 * 179.97438 * 3 2 1 5 5 C 1.47105 * 119.99914 * 359.97438 * 3 2 1 6 6 C 1.32998 * 120.00135 * 180.02562 * 5 3 2 7 7 C 1.51402 * 136.31851 * 180.02562 * 6 5 3 8 8 C 1.53670 * 87.41372 * 153.98868 * 7 6 5 9 9 C 1.51404 * 136.31505 * 359.97438 * 6 5 3 10 10 C 1.46498 * 120.00404 * 179.97438 * 2 1 3 11 11 H 1.09005 * 109.46974 * 354.39400 * 10 2 1 12 12 C 1.53002 * 109.47218 * 234.39846 * 10 2 1 13 13 N 1.46896 * 109.47246 * 54.99844 * 12 10 2 14 14 C 1.46896 * 110.99884 * 180.02562 * 13 12 10 15 15 C 1.50708 * 109.47188 * 179.97438 * 14 13 12 16 16 O 1.21295 * 119.99717 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99804 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99512 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00504 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99922 * 179.97438 * 18 17 15 21 21 N 1.31419 * 120.00262 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00323 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47076 * 89.99350 * 22 20 18 24 24 H 1.48499 * 109.47148 * 210.00243 * 22 20 18 25 25 H 1.48506 * 109.46611 * 329.99994 * 22 20 18 26 26 C 1.52997 * 109.47404 * 114.39542 * 10 2 1 27 27 C 1.53003 * 117.49792 * 2.57538 * 26 10 2 28 28 C 1.53006 * 117.49674 * 293.91728 * 26 10 2 29 29 H 1.09000 * 109.46629 * 84.74386 * 1 2 3 30 30 H 1.09005 * 109.46655 * 204.73452 * 1 2 3 31 31 H 1.08991 * 109.47148 * 324.73835 * 1 2 3 32 32 H 1.07999 * 119.99846 * 359.97438 * 5 3 2 33 33 H 1.09004 * 113.56125 * 268.62525 * 7 6 5 34 34 H 1.09005 * 113.56100 * 39.35794 * 7 6 5 35 35 H 1.08997 * 113.82668 * 139.84510 * 8 7 6 36 36 H 1.08998 * 113.82808 * 271.43110 * 8 7 6 37 37 H 1.09007 * 113.55988 * 320.64174 * 9 6 5 38 38 H 1.08997 * 113.56528 * 91.37442 * 9 6 5 39 39 H 1.09002 * 109.47237 * 174.99672 * 12 10 2 40 40 H 1.09000 * 109.46813 * 294.99444 * 12 10 2 41 41 H 1.00897 * 111.00340 * 56.04496 * 13 12 10 42 42 H 1.08998 * 109.47411 * 299.99945 * 14 13 12 43 43 H 1.09003 * 109.47413 * 59.99957 * 14 13 12 44 44 H 0.96998 * 120.00692 * 359.97438 * 17 15 14 45 45 H 0.96995 * 120.00189 * 179.97438 * 21 20 18 46 46 H 1.08994 * 115.54968 * 148.25051 * 26 10 2 47 47 H 1.09003 * 117.49482 * 0.02562 * 27 26 10 48 48 H 1.08995 * 117.49826 * 145.02188 * 27 26 10 49 49 H 1.08999 * 117.49936 * 214.97821 * 28 26 10 50 50 H 1.08999 * 117.49866 * 359.97389 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3550 1.1673 0.0005 5 6 1.4033 2.4411 -0.0006 6 6 2.0682 3.5930 -0.0011 7 6 1.7101 5.0640 -0.0013 8 6 3.0672 5.3232 0.6714 9 6 3.5213 4.0184 -0.0008 10 6 2.1976 -1.2687 0.0006 11 1 1.4936 -2.0947 0.1013 12 6 3.1799 -1.2899 1.1735 13 7 2.4544 -1.0319 2.4245 14 6 3.3679 -1.0442 3.5748 15 6 2.5896 -0.7759 4.8372 16 8 1.3919 -0.5920 4.7837 17 7 3.2247 -0.7392 6.0254 18 6 2.5165 -0.4956 7.1738 19 1 1.4498 -0.3335 7.1264 20 6 3.1711 -0.4584 8.3989 21 7 4.4688 -0.6571 8.4569 22 14 2.2062 -0.1272 9.9638 23 1 1.7340 -1.4137 10.5358 24 1 3.0798 0.5612 10.9477 25 1 1.0375 0.7343 9.6517 26 6 2.9686 -1.4130 -1.3130 27 6 2.8952 -0.2518 -2.3066 28 6 2.1523 -1.5579 -2.5990 29 1 -0.3632 0.0941 -1.0234 30 1 -0.3633 -0.9334 0.4300 31 1 -0.3633 0.8390 0.5932 32 1 0.3233 2.4411 -0.0014 33 1 1.6299 5.4928 -1.0002 34 1 0.8566 5.3047 0.6326 35 1 3.5797 6.2110 0.3011 36 1 3.0366 5.2698 1.7596 37 1 4.1563 3.3998 0.6335 38 1 3.9332 4.1631 -0.9995 39 1 3.6607 -2.2667 1.2271 40 1 3.9372 -0.5197 1.0271 41 1 1.7043 -1.6948 2.5509 42 1 3.8504 -2.0190 3.6453 43 1 4.1262 -0.2720 3.4449 44 1 4.1825 -0.8859 6.0682 45 1 4.9258 -0.6307 9.3120 46 1 3.9081 -1.9618 -1.2488 47 1 2.2979 0.6152 -2.0241 48 1 3.7863 -0.0369 -2.8962 49 1 2.5551 -2.2016 -3.3810 50 1 1.0661 -1.5508 -2.5091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507005556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:07 Heat of formation + Delta-G solvation = -4.694032 kcal Electronic energy + Delta-G solvation = -29744.660902 eV Core-core repulsion = 25773.836714 eV Total energy + Delta-G solvation = -3970.824188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50138 -40.14738 -39.55120 -37.85702 -36.70245 -35.88586 -35.47367 -33.29528 -32.14523 -30.64254 -28.11378 -27.23458 -26.64174 -25.96620 -24.41698 -23.45912 -23.00246 -22.00118 -21.16028 -20.18727 -19.87863 -18.65452 -18.02773 -17.76580 -17.29051 -17.18943 -16.53782 -16.42580 -16.31129 -15.97580 -15.79348 -15.26986 -15.15648 -14.94245 -14.81428 -14.31701 -14.10146 -13.82482 -13.60570 -13.45419 -13.32659 -13.25398 -13.03431 -12.86172 -12.77599 -12.74129 -12.59077 -12.43646 -12.23368 -12.13482 -12.07734 -11.82747 -11.52279 -11.41751 -11.18008 -10.97998 -10.37638 -10.23444 -10.08049 -10.03861 -9.36939 -9.28229 -8.48155 -5.97583 0.51361 1.36732 1.40034 1.53546 2.01963 2.15408 2.27544 2.53952 2.80612 3.03242 3.18540 3.39434 3.49864 3.60067 3.82038 3.87059 3.99082 4.01758 4.16784 4.25643 4.26205 4.31948 4.38159 4.39571 4.47572 4.50871 4.62623 4.65473 4.69765 4.73863 4.75767 4.81441 4.85533 4.92308 5.00279 5.02356 5.06525 5.07821 5.25128 5.29101 5.29633 5.37832 5.38571 5.71082 5.80286 5.86953 6.06981 6.46348 6.57322 6.65600 7.09828 7.48226 7.52947 8.07637 8.69505 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.003047 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.988944 B = 9188.466614 C =10763.224604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.595 5.595 3 C 0.557 3.443 4 O -0.565 6.565 5 C -0.218 4.218 6 C -0.076 4.076 7 C -0.095 4.095 8 C -0.139 4.139 9 C -0.110 4.110 10 C 0.189 3.811 11 H 0.104 0.896 12 C 0.047 3.953 13 N -0.668 5.668 14 C 0.070 3.930 15 C 0.441 3.559 16 O -0.618 6.618 17 N -0.574 5.574 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.995 3.005 23 H -0.269 1.269 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.163 4.163 27 C -0.168 4.168 28 C -0.157 4.157 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.342 0.658 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.109 0.891 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.105 0.895 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 3.852 -23.537 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.327 5.327 3 C 0.349 3.651 4 O -0.446 6.446 5 C -0.238 4.238 6 C -0.078 4.078 7 C -0.132 4.132 8 C -0.176 4.176 9 C -0.146 4.146 10 C 0.085 3.915 11 H 0.122 0.878 12 C -0.083 4.083 13 N -0.300 5.300 14 C -0.063 4.063 15 C 0.228 3.772 16 O -0.504 6.504 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.819 3.181 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.183 4.183 27 C -0.205 4.205 28 C -0.194 4.194 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.166 0.834 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.160 0.840 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.127 0.873 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.123 0.877 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.607 4.634 -23.468 24.361 hybrid contribution 0.537 -1.015 1.336 1.762 sum -4.070 3.618 -22.132 22.792 Atomic orbital electron populations 1.21952 0.78214 1.03924 1.02260 1.47536 1.07372 1.04847 1.72899 1.18382 0.86966 0.84483 0.75275 1.90675 1.14819 1.87755 1.51356 1.21932 1.00671 0.90692 1.10513 1.23839 0.98555 0.95455 0.89956 1.22368 0.98388 0.89466 1.02943 1.22747 0.97179 0.97893 0.99819 1.22285 0.93913 0.96672 1.01771 1.20533 0.93147 0.85875 0.91968 0.87830 1.22431 0.97188 1.00385 0.88291 1.59895 1.12020 1.57693 1.00351 1.21430 0.94771 1.01447 0.88661 1.20735 0.88347 0.82662 0.85415 1.90467 1.16693 1.56067 1.87187 1.41939 1.10650 1.63008 1.05479 1.19686 0.93868 1.47649 0.85132 0.90182 1.26098 0.96799 0.96461 1.02048 1.69687 1.08879 1.49648 1.28089 0.84897 0.77787 0.78692 0.76767 1.19399 1.19555 1.19666 1.22507 1.01410 1.04146 0.90212 1.22851 1.02460 0.92697 1.02532 1.23049 0.99046 0.99524 0.97807 0.90861 0.90240 0.91456 0.83410 0.85857 0.89755 0.88300 0.91038 0.92832 0.87595 0.93667 0.90394 0.83954 0.91835 0.89721 0.77183 0.91278 0.87302 0.90022 0.89897 0.87667 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 10.01 127.77 1.28 2.69 16 2 N -0.60 -14.17 1.96 -826.87 -1.62 -15.79 16 3 C 0.56 16.02 4.75 86.57 0.41 16.43 16 4 O -0.56 -19.33 11.32 -4.06 -0.05 -19.38 16 5 C -0.22 -5.46 9.21 23.43 0.22 -5.25 16 6 C -0.08 -1.80 6.92 -17.17 -0.12 -1.92 16 7 C -0.10 -1.56 7.95 30.16 0.24 -1.32 16 8 C -0.14 -2.60 8.18 31.03 0.25 -2.34 16 9 C -0.11 -2.60 7.01 30.15 0.21 -2.38 16 10 C 0.19 4.30 2.64 44.99 0.12 4.41 16 11 H 0.10 1.97 7.70 -2.38 -0.02 1.95 16 12 C 0.05 1.32 4.74 86.30 0.41 1.72 16 13 N -0.67 -23.01 5.85 -517.93 -3.03 -26.04 16 14 C 0.07 2.68 6.17 85.56 0.53 3.21 16 15 C 0.44 22.14 7.82 87.66 0.69 22.82 16 16 O -0.62 -35.09 15.78 -3.08 -0.05 -35.13 16 17 N -0.57 -30.85 5.29 -306.97 -1.62 -32.47 16 18 C -0.33 -19.50 9.68 84.04 0.81 -18.69 16 19 H 0.08 4.95 7.16 -2.91 -0.02 4.92 16 20 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 21 N -0.92 -51.19 13.05 21.66 0.28 -50.91 16 22 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 26 C -0.16 -3.35 5.33 -10.79 -0.06 -3.41 16 27 C -0.17 -3.62 8.45 30.62 0.26 -3.36 16 28 C -0.16 -2.52 10.24 30.62 0.31 -2.21 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.30 7.77 -2.38 -0.02 1.28 16 31 H 0.07 1.27 6.41 -2.39 -0.02 1.26 16 32 H 0.15 2.96 6.34 -2.91 -0.02 2.94 16 33 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.63 7.48 -2.38 -0.02 1.61 16 38 H 0.11 2.17 8.14 -2.39 -0.02 2.16 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 2.65 5.97 -2.39 -0.01 2.64 16 41 H 0.34 11.68 8.43 -89.70 -0.76 10.92 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.39 20.41 7.90 -92.71 -0.73 19.68 16 45 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 46 H 0.11 2.21 8.07 -2.39 -0.02 2.19 16 47 H 0.08 2.00 5.15 -2.39 -0.01 1.99 16 48 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -73.11 403.09 1.45 -71.67 By element: Atomic # 1 Polarization: 52.80 SS G_CDS: -0.53 Total: 52.27 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 6.03 Total: 10.07 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -5.99 Total: -125.21 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -0.09 Total: -54.52 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -73.11 1.45 -71.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507005556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.972 kcal (2) G-P(sol) polarization free energy of solvation -73.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds