Wall clock time and date at job start Tue Mar 31 2020 18:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00216 * 2 1 4 4 C 1.50702 * 109.47385 * 293.95643 * 3 2 1 5 5 O 1.21287 * 119.99716 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00424 * 179.97438 * 4 3 2 7 7 C 1.37095 * 120.00395 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99914 * 0.02562 * 7 6 4 9 9 C 1.38951 * 120.00207 * 180.02562 * 7 6 4 10 10 N 1.31408 * 120.00127 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00078 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47053 * 89.99836 * 11 9 7 13 13 H 1.48492 * 109.47252 * 209.99680 * 11 9 7 14 14 H 1.48498 * 109.47108 * 330.00005 * 11 9 7 15 15 C 1.46897 * 111.00200 * 123.95546 * 2 1 3 16 16 H 1.09002 * 109.49788 * 296.10965 * 15 2 1 17 17 C 1.53038 * 109.50175 * 176.04474 * 15 2 1 18 18 C 1.53035 * 109.54175 * 178.65135 * 17 15 2 19 19 C 1.53191 * 109.31327 * 61.36680 * 18 17 15 20 20 N 1.46926 * 108.89109 * 305.29292 * 19 18 17 21 21 C 1.34778 * 120.63336 * 233.68039 * 20 19 18 22 22 O 1.21273 * 120.00022 * 180.02562 * 21 20 19 23 23 C 1.50706 * 119.99581 * 0.02562 * 21 20 19 24 24 H 1.09000 * 115.54933 * 325.71730 * 23 21 20 25 25 C 1.52996 * 117.49750 * 111.39231 * 23 21 20 26 26 C 1.52989 * 117.49442 * 180.02562 * 23 21 20 27 27 C 1.52993 * 138.59046 * 121.61816 * 26 23 21 28 28 C 1.52994 * 138.59403 * 23.39872 * 26 23 21 29 29 C 1.47207 * 118.55531 * 53.54119 * 20 19 18 30 30 H 1.08998 * 109.46606 * 296.04587 * 1 2 3 31 31 H 1.08998 * 109.46808 * 56.04345 * 1 2 3 32 32 H 1.09000 * 109.46872 * 176.04458 * 1 2 3 33 33 H 1.09004 * 109.47287 * 53.95347 * 3 2 1 34 34 H 1.08998 * 109.47646 * 173.95800 * 3 2 1 35 35 H 0.97007 * 120.00089 * 359.97438 * 6 4 3 36 36 H 0.96999 * 120.00442 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.46001 * 58.62469 * 17 15 2 38 38 H 1.09004 * 109.46331 * 298.67527 * 17 15 2 39 39 H 1.09003 * 109.49576 * 301.41349 * 18 17 15 40 40 H 1.09000 * 109.52700 * 181.33397 * 18 17 15 41 41 H 1.09002 * 109.58786 * 65.15336 * 19 18 17 42 42 H 1.08996 * 109.58870 * 185.43616 * 19 18 17 43 43 H 1.09001 * 117.49802 * 214.97310 * 25 23 21 44 44 H 1.09001 * 117.49981 * 359.97438 * 25 23 21 45 45 H 1.08998 * 117.50035 * 336.59071 * 27 26 23 46 46 H 1.09008 * 117.50075 * 121.61257 * 27 26 23 47 47 H 1.08999 * 117.50297 * 238.38689 * 28 26 23 48 48 H 1.09004 * 117.49829 * 23.40865 * 28 26 23 49 49 H 1.08996 * 109.53610 * 186.67231 * 29 20 19 50 50 H 1.09002 * 109.68003 * 66.36699 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 8 1.0054 1.4454 -2.1411 6 7 2.0180 3.3202 -1.5233 7 6 1.6923 3.9348 -2.7047 8 1 1.1300 3.3989 -3.4550 9 6 2.0857 5.2471 -2.9367 10 7 2.7695 5.8993 -2.0235 11 14 1.6413 6.0847 -4.5462 12 1 0.3290 6.7652 -4.4042 13 1 2.6836 7.0858 -4.8875 14 1 1.5578 5.0690 -5.6263 15 6 1.9955 -0.7660 1.1375 16 1 1.7037 -0.2809 2.0690 17 6 3.5221 -0.8268 1.0497 18 6 4.0738 -1.5959 2.2523 19 6 3.5308 -3.0282 2.2301 20 7 2.0636 -2.9799 2.1698 21 6 1.3168 -3.6437 3.0743 22 8 0.1065 -3.5962 3.0134 23 6 1.9859 -4.4448 4.1614 24 1 2.9217 -4.9282 3.8809 25 6 1.8581 -3.9321 5.5972 26 6 1.0834 -5.1761 5.1570 27 6 0.8337 -6.6046 5.6447 28 6 -0.3439 -5.7227 5.2251 29 6 1.4289 -2.1889 1.1027 30 1 -0.3632 0.4512 0.9233 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3633 -1.0252 -0.0709 33 1 1.5611 1.9273 0.8309 34 1 3.0797 1.3444 0.1082 35 1 2.5228 3.8017 -0.8492 36 1 3.0445 6.8153 -2.1856 37 1 3.9265 0.1854 1.0494 38 1 3.8131 -1.3340 0.1298 39 1 3.7624 -1.1030 3.1733 40 1 5.1624 -1.6187 2.2020 41 1 3.9156 -3.5513 1.3547 42 1 3.8423 -3.5511 3.1344 43 1 2.7098 -4.0785 6.2615 44 1 1.2906 -3.0151 5.7555 45 1 1.1143 -7.4202 4.9783 46 1 0.9602 -6.8023 6.7092 47 1 -0.9924 -5.3402 6.0133 48 1 -0.8382 -5.9582 4.2825 49 1 0.3515 -2.1572 1.2643 50 1 1.6400 -2.6427 0.1344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567198529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:59 Heat of formation + Delta-G solvation = -16.030034 kcal Electronic energy + Delta-G solvation = -29195.874712 eV Core-core repulsion = 25224.558958 eV Total energy + Delta-G solvation = -3971.315754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.56080 -40.49815 -39.37775 -38.20607 -36.94459 -35.84834 -33.76896 -33.33845 -33.24684 -31.39877 -29.48302 -27.45312 -26.41414 -25.66473 -24.20726 -23.28824 -22.94007 -21.64294 -20.91738 -20.55667 -19.85897 -19.40862 -18.55834 -17.80086 -17.17653 -16.65583 -16.45935 -16.25395 -16.17188 -15.88141 -15.80128 -15.61800 -15.37354 -15.23131 -15.10679 -14.66643 -14.10522 -14.07452 -13.91550 -13.73042 -13.47091 -13.31068 -13.05551 -12.76094 -12.74147 -12.61313 -12.43386 -12.37211 -12.35438 -12.12335 -11.88332 -11.77358 -11.47085 -11.43000 -11.18371 -11.04255 -10.93437 -10.71757 -10.29818 -10.00219 -9.71209 -9.30547 -8.46392 -5.94821 1.37512 1.40883 1.41503 1.54024 1.76583 2.04646 2.28607 2.69935 2.73367 2.83137 3.19856 3.31264 3.35916 3.51835 3.72703 3.83198 3.85282 3.96995 4.05648 4.07919 4.17690 4.25956 4.31602 4.43239 4.47522 4.49423 4.53942 4.55724 4.57498 4.67865 4.74213 4.76116 4.77815 4.80294 4.83342 4.97113 5.00889 5.02330 5.08123 5.10556 5.14375 5.26579 5.35625 5.41528 5.44640 5.82866 6.02675 6.14243 6.37800 6.60813 7.11659 7.13273 7.56247 8.12366 8.71005 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.002031 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.875653 B =13780.104933 C =14193.351684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.525 5.525 3 C 0.057 3.943 4 C 0.442 3.558 5 O -0.613 6.613 6 N -0.574 5.574 7 C -0.332 4.332 8 H 0.078 0.922 9 C -0.013 4.013 10 N -0.920 5.920 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.080 3.920 16 H 0.037 0.963 17 C -0.118 4.118 18 C -0.124 4.124 19 C 0.099 3.901 20 N -0.605 5.605 21 C 0.534 3.466 22 O -0.584 6.584 23 C -0.142 4.142 24 H 0.156 0.844 25 C -0.084 4.084 26 C -0.228 4.228 27 C -0.102 4.102 28 C -0.138 4.138 29 C 0.125 3.875 30 H 0.022 0.978 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.140 0.860 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.098 0.902 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -21.275 19.252 29.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.250 5.250 3 C -0.074 4.074 4 C 0.230 3.770 5 O -0.499 6.499 6 N -0.211 5.211 7 C -0.461 4.461 8 H 0.096 0.904 9 C -0.213 4.213 10 N -0.561 5.561 11 Si 0.816 3.184 12 H -0.198 1.198 13 H -0.194 1.194 14 H -0.198 1.198 15 C -0.029 4.029 16 H 0.055 0.945 17 C -0.156 4.156 18 C -0.162 4.162 19 C -0.022 4.022 20 N -0.337 5.337 21 C 0.324 3.676 22 O -0.464 6.464 23 C -0.163 4.163 24 H 0.173 0.827 25 C -0.121 4.121 26 C -0.229 4.229 27 C -0.138 4.138 28 C -0.175 4.175 29 C 0.001 3.999 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.104 0.896 45 H 0.123 0.877 46 H 0.137 0.863 47 H 0.116 0.884 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.836 -21.687 18.216 28.917 hybrid contribution -0.745 1.598 -0.250 1.781 sum 5.091 -20.089 17.965 27.427 Atomic orbital electron populations 1.22420 0.87305 1.02225 1.00202 1.61551 1.08263 1.12395 1.42774 1.21792 1.02585 0.89068 0.93983 1.20689 0.83777 0.82278 0.90287 1.90465 1.45090 1.65383 1.49004 1.41914 1.50101 1.11464 1.17624 1.19645 1.34398 0.96429 0.95638 0.90361 1.26022 0.96283 0.96601 1.02373 1.69667 1.38102 1.12632 1.35684 0.84937 0.78199 0.77799 0.77452 1.19802 1.19435 1.19830 1.21954 0.96999 0.93141 0.90818 0.94540 1.21712 0.92023 1.01851 1.00030 1.21895 1.02286 0.94526 0.97503 1.22141 0.76904 0.98246 1.04875 1.48198 1.08427 1.48263 1.28804 1.20394 0.86474 0.78877 0.81877 1.90673 1.16202 1.64602 1.74956 1.22046 1.01412 1.02750 0.90070 0.82676 1.22757 1.01564 0.95000 0.92812 1.21462 1.00114 0.97402 1.03924 1.22843 0.98754 0.89651 1.02573 1.22582 0.89931 1.02714 1.02292 1.21449 0.97716 0.90160 0.90550 0.95977 0.91964 0.90879 0.92133 0.86483 0.77040 0.91316 0.91041 0.91019 0.91371 0.87357 0.89918 0.86547 0.84220 0.89615 0.87704 0.86252 0.88385 0.90379 0.91294 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 8.76 127.69 1.12 2.07 16 2 N -0.53 -17.84 4.37 -901.17 -3.94 -21.77 16 3 C 0.06 2.03 5.26 85.56 0.45 2.48 16 4 C 0.44 21.41 7.47 87.66 0.66 22.07 16 5 O -0.61 -34.36 13.91 -3.05 -0.04 -34.41 16 6 N -0.57 -29.73 5.29 -306.99 -1.62 -31.35 16 7 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 10 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 11 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 15 C 0.08 2.08 2.09 44.99 0.09 2.17 16 16 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 17 C -0.12 -2.38 5.00 30.62 0.15 -2.23 16 18 C -0.12 -1.54 6.08 30.67 0.19 -1.35 16 19 C 0.10 1.19 6.29 86.36 0.54 1.73 16 20 N -0.60 -12.49 2.98 -818.19 -2.44 -14.93 16 21 C 0.53 12.63 7.49 87.66 0.66 13.29 16 22 O -0.58 -19.32 15.68 -3.01 -0.05 -19.37 16 23 C -0.14 -2.15 4.97 -11.54 -0.06 -2.21 16 24 H 0.16 1.33 6.81 -2.39 -0.02 1.32 16 25 C -0.08 -1.06 10.24 30.60 0.31 -0.74 16 26 C -0.23 -3.66 5.05 -52.18 -0.26 -3.92 16 27 C -0.10 -1.16 10.53 30.59 0.32 -0.84 16 28 C -0.14 -2.46 10.16 30.59 0.31 -2.15 16 29 C 0.12 3.25 5.17 86.31 0.45 3.70 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 2.68 5.82 -2.39 -0.01 2.67 16 32 H 0.07 2.41 6.37 -2.39 -0.02 2.39 16 33 H 0.06 2.01 8.12 -2.39 -0.02 2.00 16 34 H 0.12 3.60 5.80 -2.39 -0.01 3.59 16 35 H 0.40 19.43 7.90 -92.70 -0.73 18.70 16 36 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 37 H 0.07 1.46 6.13 -2.39 -0.01 1.45 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.12 0.72 5.67 -2.39 -0.01 0.71 16 43 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 49 H 0.07 2.14 5.58 -2.39 -0.01 2.12 16 50 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -75.58 395.42 0.65 -74.92 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.22 Total: 35.39 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 6.21 Total: 15.65 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -7.72 Total: -117.50 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.09 Total: -53.78 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -75.58 0.65 -74.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567198529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.894 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds