Wall clock time and date at job start Tue Mar 31 2020 18:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99769 * 2 1 4 4 C 1.50703 * 109.47094 * 293.95492 * 3 2 1 5 5 O 1.21288 * 120.00019 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99735 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99872 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99705 * 0.02562 * 7 6 4 9 9 C 1.38942 * 120.00084 * 180.02562 * 7 6 4 10 10 N 1.31408 * 120.00191 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00129 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 89.99853 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00033 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00027 * 11 9 7 15 15 C 1.46899 * 111.00391 * 123.95400 * 2 1 3 16 16 H 1.09003 * 109.49991 * 185.98630 * 15 2 1 17 17 C 1.53042 * 109.49625 * 306.04768 * 15 2 1 18 18 C 1.53041 * 109.53854 * 181.31279 * 17 15 2 19 19 C 1.53191 * 109.31326 * 298.63848 * 18 17 15 20 20 N 1.46923 * 108.77420 * 54.63393 * 19 18 17 21 21 C 1.34781 * 120.62825 * 126.36992 * 20 19 18 22 22 O 1.21282 * 119.99856 * 179.97438 * 21 20 19 23 23 C 1.50701 * 120.00333 * 359.97438 * 21 20 19 24 24 H 1.08998 * 115.54714 * 34.41184 * 23 21 20 25 25 C 1.52998 * 117.49905 * 248.74790 * 23 21 20 26 26 C 1.52991 * 117.49849 * 180.08552 * 23 21 20 27 27 C 1.52991 * 138.59039 * 336.59688 * 26 23 21 28 28 C 1.52991 * 138.59008 * 238.37694 * 26 23 21 29 29 C 1.46919 * 118.74198 * 306.38914 * 20 19 18 30 30 H 1.08999 * 109.47294 * 60.00271 * 1 2 3 31 31 H 1.09001 * 109.46735 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47159 * 299.99396 * 1 2 3 33 33 H 1.09002 * 109.47117 * 173.95187 * 3 2 1 34 34 H 1.08998 * 109.47117 * 53.95304 * 3 2 1 35 35 H 0.96998 * 120.00302 * 0.02562 * 6 4 3 36 36 H 0.97009 * 120.00103 * 0.02562 * 10 9 7 37 37 H 1.09000 * 109.46362 * 301.33772 * 17 15 2 38 38 H 1.09000 * 109.45882 * 61.30774 * 17 15 2 39 39 H 1.09006 * 109.49469 * 58.58898 * 18 17 15 40 40 H 1.08997 * 109.49711 * 178.68253 * 18 17 15 41 41 H 1.09000 * 109.58215 * 174.41890 * 19 18 17 42 42 H 1.08994 * 109.58606 * 294.84157 * 19 18 17 43 43 H 1.09000 * 117.49715 * 359.97438 * 25 23 21 44 44 H 1.08999 * 117.50059 * 145.01721 * 25 23 21 45 45 H 1.09001 * 117.50041 * 336.59814 * 27 26 23 46 46 H 1.09005 * 117.49707 * 121.62121 * 27 26 23 47 47 H 1.09000 * 117.49892 * 238.38836 * 28 26 23 48 48 H 1.09004 * 117.49464 * 23.41094 * 28 26 23 49 49 H 1.09002 * 109.58550 * 293.82538 * 29 20 19 50 50 H 1.08999 * 109.58998 * 173.40227 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 8 1.0053 1.4453 -2.1411 6 7 2.0178 3.3203 -1.5233 7 6 1.6921 3.9348 -2.7047 8 1 1.1298 3.3989 -3.4550 9 6 2.0854 5.2471 -2.9367 10 7 2.7699 5.8990 -2.0240 11 14 1.6409 6.0847 -4.5462 12 1 0.3286 6.7651 -4.4043 13 1 1.5576 5.0690 -5.6263 14 1 2.6832 7.0858 -4.8876 15 6 1.9955 -0.7660 1.1375 16 1 3.0799 -0.6622 1.1753 17 6 1.3860 -0.2347 2.4370 18 6 1.9587 -1.0103 3.6255 19 6 1.5908 -2.4911 3.4888 20 7 2.0469 -2.9726 2.1778 21 6 2.8349 -4.0619 2.0825 22 8 3.2044 -4.4497 0.9944 23 6 3.2569 -4.7980 3.3280 24 1 2.5212 -4.8221 4.1318 25 6 4.7333 -4.7287 3.7234 26 6 4.1532 -6.0255 3.1535 27 6 4.4896 -7.0566 2.0744 28 6 4.1328 -7.5181 3.4888 29 6 1.6280 -2.2440 0.9727 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 3.0797 1.3445 0.1083 34 1 1.5610 1.9274 0.8309 35 1 2.5232 3.8015 -0.8495 36 1 3.0011 5.4640 -1.1883 37 1 1.6254 0.8233 2.5444 38 1 0.3038 -0.3611 2.4087 39 1 3.0435 -0.9048 3.6401 40 1 1.5419 -0.6159 4.5522 41 1 2.0786 -3.0631 4.2781 42 1 0.5098 -2.6075 3.5651 43 1 5.3994 -4.1511 3.0826 44 1 4.9689 -4.7077 4.7875 45 1 3.7518 -7.2227 1.2895 46 1 5.5317 -7.1402 1.7657 47 1 4.9400 -7.9054 4.1105 48 1 3.1600 -7.9879 3.6344 49 1 0.5500 -2.3403 0.8438 50 1 2.1402 -2.6530 0.1019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567198532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:09 Heat of formation + Delta-G solvation = 7.323195 kcal Electronic energy + Delta-G solvation = -29248.271591 eV Core-core repulsion = 25277.968509 eV Total energy + Delta-G solvation = -3970.303082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72486 -39.28582 -38.21581 -37.33914 -35.79574 -34.20375 -33.02646 -32.36926 -31.13264 -30.31935 -27.82170 -26.19202 -25.42411 -24.22832 -23.25945 -22.70164 -22.41236 -20.61850 -19.67292 -19.35925 -18.64666 -17.86860 -17.64066 -16.44684 -16.24809 -15.49949 -15.48448 -15.28713 -15.20781 -14.82437 -14.52843 -14.46838 -14.29493 -13.89680 -13.75850 -13.51564 -13.31214 -12.96124 -12.85950 -12.63962 -12.24925 -12.00498 -11.79901 -11.73123 -11.43747 -11.24064 -11.18117 -11.10233 -11.00235 -10.84694 -10.79350 -10.55929 -10.42776 -10.31802 -10.20733 -9.85515 -9.84349 -9.49869 -8.88767 -8.46147 -8.02484 -7.86773 -6.73816 -3.86751 2.26250 2.59954 3.31716 3.36084 3.36533 3.41454 3.55663 3.85638 3.90302 3.96945 4.23326 4.31669 4.41367 4.50775 4.60438 4.64260 4.69002 4.84733 4.96564 5.04510 5.08313 5.13436 5.20963 5.24678 5.25793 5.28765 5.31878 5.33644 5.45430 5.51450 5.55874 5.60148 5.63971 5.64271 5.73507 5.77597 5.81669 5.87073 5.88356 6.01425 6.05741 6.11277 6.28008 6.51595 7.13835 7.21964 7.32137 7.83149 8.01128 8.10095 8.62105 8.82546 9.49516 9.90627 10.69709 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.002076 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.177511 B =13485.784482 C =13801.939961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.509 5.509 3 C 0.048 3.952 4 C 0.447 3.553 5 O -0.570 6.570 6 N -0.577 5.577 7 C -0.380 4.380 8 H 0.099 0.901 9 C -0.011 4.011 10 N -0.903 5.903 11 Si 1.094 2.906 12 H -0.285 1.285 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.073 3.927 16 H 0.083 0.917 17 C -0.157 4.157 18 C -0.129 4.129 19 C 0.106 3.894 20 N -0.608 5.608 21 C 0.542 3.458 22 O -0.529 6.529 23 C -0.142 4.142 24 H 0.124 0.876 25 C -0.099 4.099 26 C -0.203 4.203 27 C -0.113 4.113 28 C -0.130 4.130 29 C 0.122 3.878 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.375 0.625 36 H 0.261 0.739 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 -20.249 19.209 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.231 5.231 3 C -0.084 4.084 4 C 0.233 3.767 5 O -0.453 6.453 6 N -0.216 5.216 7 C -0.509 4.509 8 H 0.117 0.883 9 C -0.213 4.213 10 N -0.542 5.542 11 Si 0.920 3.080 12 H -0.212 1.212 13 H -0.209 1.209 14 H -0.207 1.207 15 C -0.037 4.037 16 H 0.101 0.899 17 C -0.197 4.197 18 C -0.168 4.168 19 C -0.017 4.017 20 N -0.342 5.342 21 C 0.330 3.670 22 O -0.405 6.405 23 C -0.163 4.163 24 H 0.142 0.858 25 C -0.137 4.137 26 C -0.203 4.203 27 C -0.150 4.150 28 C -0.166 4.166 29 C -0.001 4.001 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.208 0.792 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.089 0.911 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.897 -19.660 16.696 25.809 hybrid contribution -0.234 -0.515 2.293 2.361 sum 0.664 -20.175 18.989 27.714 Atomic orbital electron populations 1.22637 0.86843 1.01538 1.02112 1.61683 1.08779 1.12754 1.39901 1.21860 1.00567 0.89017 0.96949 1.19651 0.85454 0.82622 0.88993 1.90491 1.43470 1.64320 1.47000 1.41942 1.50216 1.11436 1.17959 1.20558 1.36474 0.98630 0.95271 0.88281 1.26499 0.95612 0.93642 1.05539 1.70874 1.36762 1.39100 1.07469 0.83092 0.76452 0.75547 0.72938 1.21167 1.20914 1.20665 1.22071 0.99964 0.93341 0.88309 0.89878 1.22292 1.01399 1.00398 0.95580 1.21858 1.01788 0.94456 0.98717 1.21798 0.99900 0.95343 0.84644 1.48023 1.50401 1.28031 1.07763 1.19682 0.77634 0.79949 0.89730 1.90716 1.54773 1.66275 1.28768 1.21983 0.95863 1.00060 0.98375 0.85838 1.22675 0.92677 0.96850 1.01453 1.21180 1.04279 0.87095 1.07773 1.22609 1.02459 0.98172 0.91715 1.22768 1.02888 0.91772 0.99213 1.21597 1.00303 0.90376 0.87792 0.88531 0.92034 0.96219 0.89576 0.93400 0.79238 0.92787 0.91313 0.91100 0.91285 0.90603 0.89525 0.91293 0.87985 0.87549 0.88129 0.88455 0.88313 0.88566 0.91124 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.33 60.06 0.50 0.76 16 2 N -0.51 -8.43 4.45 -236.18 -1.05 -9.48 16 3 C 0.05 0.84 5.02 -4.97 -0.02 0.82 16 4 C 0.45 10.62 7.51 -10.98 -0.08 10.54 16 5 O -0.57 -15.53 13.89 5.55 0.08 -15.45 16 6 N -0.58 -14.61 5.28 -10.96 -0.06 -14.67 16 7 C -0.38 -10.75 9.68 -14.94 -0.14 -10.89 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 C -0.01 -0.29 5.50 -17.47 -0.10 -0.39 16 10 N -0.90 -25.42 13.68 55.50 0.76 -24.66 16 11 Si 1.09 24.55 29.92 -169.99 -5.09 19.47 16 12 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 15 C 0.07 0.95 2.34 -67.59 -0.16 0.79 16 16 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 17 C -0.16 -1.61 4.40 -26.69 -0.12 -1.73 16 18 C -0.13 -0.98 6.08 -26.61 -0.16 -1.15 16 19 C 0.11 0.78 6.30 -3.71 -0.02 0.75 16 20 N -0.61 -6.54 2.97 -172.78 -0.51 -7.05 16 21 C 0.54 6.60 7.48 -10.98 -0.08 6.52 16 22 O -0.53 -8.59 15.66 5.56 0.09 -8.50 16 23 C -0.14 -1.24 4.96 -91.78 -0.46 -1.70 16 24 H 0.12 0.79 6.82 -51.93 -0.35 0.43 16 25 C -0.10 -0.76 10.24 -26.69 -0.27 -1.04 16 26 C -0.20 -1.82 5.06 -154.48 -0.78 -2.60 16 27 C -0.11 -1.02 10.16 -26.74 -0.27 -1.29 16 28 C -0.13 -0.90 10.53 -26.74 -0.28 -1.18 16 29 C 0.12 1.56 5.75 -3.72 -0.02 1.54 16 30 H 0.10 1.90 5.88 -51.93 -0.31 1.60 16 31 H 0.06 0.86 6.20 -51.93 -0.32 0.54 16 32 H 0.02 0.28 6.49 -51.93 -0.34 -0.06 16 33 H 0.09 1.42 7.93 -51.93 -0.41 1.00 16 34 H 0.05 0.77 7.03 -51.93 -0.37 0.40 16 35 H 0.37 8.76 6.73 -40.82 -0.27 8.48 16 36 H 0.26 7.06 6.78 -40.82 -0.28 6.78 16 37 H 0.07 0.74 6.86 -51.93 -0.36 0.39 16 38 H 0.07 0.73 6.50 -51.93 -0.34 0.39 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.46 5.67 -51.93 -0.29 0.16 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.87 6.26 -51.93 -0.33 0.55 16 50 H 0.10 1.58 7.00 -51.93 -0.36 1.22 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -34.73 391.04 -10.08 -44.81 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.71 Total: 9.90 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.47 Total: -0.25 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.86 Total: -55.87 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.16 Total: -23.95 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.47 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.73 -10.08 -44.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567198532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.131 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds