Wall clock time and date at job start Tue Mar 31 2020 18:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99769 * 2 1 4 4 C 1.50703 * 109.47094 * 293.95492 * 3 2 1 5 5 O 1.21288 * 120.00019 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99735 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99872 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99705 * 0.02562 * 7 6 4 9 9 C 1.38942 * 120.00084 * 180.02562 * 7 6 4 10 10 N 1.31408 * 120.00191 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00129 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 89.99853 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00033 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00027 * 11 9 7 15 15 C 1.46899 * 111.00391 * 123.95400 * 2 1 3 16 16 H 1.09003 * 109.49991 * 185.98630 * 15 2 1 17 17 C 1.53042 * 109.49625 * 306.04768 * 15 2 1 18 18 C 1.53041 * 109.53854 * 181.31279 * 17 15 2 19 19 C 1.53191 * 109.31326 * 298.63848 * 18 17 15 20 20 N 1.46923 * 108.77420 * 54.63393 * 19 18 17 21 21 C 1.34781 * 120.62825 * 126.36992 * 20 19 18 22 22 O 1.21282 * 119.99856 * 179.97438 * 21 20 19 23 23 C 1.50701 * 120.00333 * 359.97438 * 21 20 19 24 24 H 1.08998 * 115.54714 * 34.41184 * 23 21 20 25 25 C 1.52998 * 117.49905 * 248.74790 * 23 21 20 26 26 C 1.52991 * 117.49849 * 180.08552 * 23 21 20 27 27 C 1.52991 * 138.59039 * 336.59688 * 26 23 21 28 28 C 1.52991 * 138.59008 * 238.37694 * 26 23 21 29 29 C 1.46919 * 118.74198 * 306.38914 * 20 19 18 30 30 H 1.08999 * 109.47294 * 60.00271 * 1 2 3 31 31 H 1.09001 * 109.46735 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47159 * 299.99396 * 1 2 3 33 33 H 1.09002 * 109.47117 * 173.95187 * 3 2 1 34 34 H 1.08998 * 109.47117 * 53.95304 * 3 2 1 35 35 H 0.96998 * 120.00302 * 0.02562 * 6 4 3 36 36 H 0.97009 * 120.00103 * 0.02562 * 10 9 7 37 37 H 1.09000 * 109.46362 * 301.33772 * 17 15 2 38 38 H 1.09000 * 109.45882 * 61.30774 * 17 15 2 39 39 H 1.09006 * 109.49469 * 58.58898 * 18 17 15 40 40 H 1.08997 * 109.49711 * 178.68253 * 18 17 15 41 41 H 1.09000 * 109.58215 * 174.41890 * 19 18 17 42 42 H 1.08994 * 109.58606 * 294.84157 * 19 18 17 43 43 H 1.09000 * 117.49715 * 359.97438 * 25 23 21 44 44 H 1.08999 * 117.50059 * 145.01721 * 25 23 21 45 45 H 1.09001 * 117.50041 * 336.59814 * 27 26 23 46 46 H 1.09005 * 117.49707 * 121.62121 * 27 26 23 47 47 H 1.09000 * 117.49892 * 238.38836 * 28 26 23 48 48 H 1.09004 * 117.49464 * 23.41094 * 28 26 23 49 49 H 1.09002 * 109.58550 * 293.82538 * 29 20 19 50 50 H 1.08999 * 109.58998 * 173.40227 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 8 1.0053 1.4453 -2.1411 6 7 2.0178 3.3203 -1.5233 7 6 1.6921 3.9348 -2.7047 8 1 1.1298 3.3989 -3.4550 9 6 2.0854 5.2471 -2.9367 10 7 2.7699 5.8990 -2.0240 11 14 1.6409 6.0847 -4.5462 12 1 0.3286 6.7651 -4.4043 13 1 1.5576 5.0690 -5.6263 14 1 2.6832 7.0858 -4.8876 15 6 1.9955 -0.7660 1.1375 16 1 3.0799 -0.6622 1.1753 17 6 1.3860 -0.2347 2.4370 18 6 1.9587 -1.0103 3.6255 19 6 1.5908 -2.4911 3.4888 20 7 2.0469 -2.9726 2.1778 21 6 2.8349 -4.0619 2.0825 22 8 3.2044 -4.4497 0.9944 23 6 3.2569 -4.7980 3.3280 24 1 2.5212 -4.8221 4.1318 25 6 4.7333 -4.7287 3.7234 26 6 4.1532 -6.0255 3.1535 27 6 4.4896 -7.0566 2.0744 28 6 4.1328 -7.5181 3.4888 29 6 1.6280 -2.2440 0.9727 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 3.0797 1.3445 0.1083 34 1 1.5610 1.9274 0.8309 35 1 2.5232 3.8015 -0.8495 36 1 3.0011 5.4640 -1.1883 37 1 1.6254 0.8233 2.5444 38 1 0.3038 -0.3611 2.4087 39 1 3.0435 -0.9048 3.6401 40 1 1.5419 -0.6159 4.5522 41 1 2.0786 -3.0631 4.2781 42 1 0.5098 -2.6075 3.5651 43 1 5.3994 -4.1511 3.0826 44 1 4.9689 -4.7077 4.7875 45 1 3.7518 -7.2227 1.2895 46 1 5.5317 -7.1402 1.7657 47 1 4.9400 -7.9054 4.1105 48 1 3.1600 -7.9879 3.6344 49 1 0.5500 -2.3403 0.8438 50 1 2.1402 -2.6530 0.1019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567198532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:08 Heat of formation + Delta-G solvation = -16.525263 kcal Electronic energy + Delta-G solvation = -29249.305738 eV Core-core repulsion = 25277.968509 eV Total energy + Delta-G solvation = -3971.337229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64029 -40.64712 -39.54344 -38.28429 -36.99431 -36.18495 -33.73631 -33.19146 -33.15703 -31.40909 -29.26903 -27.19943 -26.76223 -25.78099 -24.22403 -23.30535 -23.26913 -21.73369 -21.10580 -20.39053 -19.94310 -19.41146 -18.53902 -18.10217 -17.28440 -16.80717 -16.60005 -16.24375 -16.14003 -15.89761 -15.84840 -15.55411 -15.47488 -15.34066 -15.01187 -14.73578 -14.36451 -14.21887 -13.93238 -13.56858 -13.36631 -13.35123 -13.01302 -12.73736 -12.68813 -12.62073 -12.38513 -12.25235 -11.95495 -11.92709 -11.89345 -11.86960 -11.77839 -11.48259 -11.19650 -11.05610 -10.94519 -10.72997 -10.40599 -10.10380 -9.73212 -9.19088 -8.93352 -6.06904 1.40052 1.50760 1.53887 1.74956 1.81330 1.99772 2.38510 2.67617 2.71930 2.80929 3.15343 3.25119 3.30557 3.52001 3.69503 3.76882 3.81635 3.94498 4.01082 4.02835 4.07757 4.16661 4.25299 4.33230 4.43306 4.45254 4.50932 4.55252 4.56040 4.62398 4.72842 4.73381 4.75966 4.79175 4.82824 4.86276 4.98151 5.00654 5.04521 5.09709 5.16708 5.25469 5.31347 5.41599 5.58969 5.88085 5.96660 6.11540 6.35859 6.57451 6.75062 7.11784 7.43671 7.93179 8.54432 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.002076 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.177511 B =13485.784482 C =13801.939961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.535 5.535 3 C 0.063 3.937 4 C 0.445 3.555 5 O -0.609 6.609 6 N -0.588 5.588 7 C -0.407 4.407 8 H 0.072 0.928 9 C -0.043 4.043 10 N -0.917 5.917 11 Si 1.135 2.865 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.272 1.272 15 C 0.081 3.919 16 H 0.074 0.926 17 C -0.152 4.152 18 C -0.122 4.122 19 C 0.101 3.899 20 N -0.604 5.604 21 C 0.532 3.468 22 O -0.584 6.584 23 C -0.141 4.141 24 H 0.157 0.843 25 C -0.085 4.085 26 C -0.229 4.229 27 C -0.140 4.140 28 C -0.100 4.100 29 C 0.127 3.873 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.384 0.616 36 H 0.259 0.741 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.141 0.859 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.119 0.881 48 H 0.105 0.895 49 H 0.075 0.925 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 -20.595 22.930 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.258 5.258 3 C -0.068 4.068 4 C 0.232 3.768 5 O -0.494 6.494 6 N -0.227 5.227 7 C -0.537 4.537 8 H 0.090 0.910 9 C -0.241 4.241 10 N -0.556 5.556 11 Si 0.955 3.045 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.197 1.197 15 C -0.028 4.028 16 H 0.092 0.908 17 C -0.191 4.191 18 C -0.161 4.161 19 C -0.020 4.020 20 N -0.337 5.337 21 C 0.322 3.678 22 O -0.464 6.464 23 C -0.161 4.161 24 H 0.174 0.826 25 C -0.122 4.122 26 C -0.230 4.230 27 C -0.177 4.177 28 C -0.137 4.137 29 C 0.004 3.996 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.218 0.782 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.158 0.842 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.138 0.862 48 H 0.124 0.876 49 H 0.093 0.907 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.733 -20.003 20.493 28.646 hybrid contribution -0.190 -0.500 1.122 1.243 sum 0.542 -20.503 21.615 29.797 Atomic orbital electron populations 1.22478 0.86605 1.02250 1.00956 1.61570 1.09251 1.12244 1.42772 1.21690 1.01669 0.89608 0.93871 1.20767 0.83563 0.81933 0.90502 1.90474 1.44774 1.65123 1.49018 1.41987 1.50924 1.12228 1.17588 1.20516 1.37562 0.99353 0.96243 0.91032 1.27807 0.94672 0.93841 1.07820 1.70941 1.37462 1.39358 1.07863 0.82594 0.77138 0.75027 0.69697 1.19437 1.20517 1.19722 1.22008 0.99425 0.92737 0.88666 0.90778 1.22239 1.01524 1.00569 0.94816 1.21847 1.01683 0.94086 0.98478 1.22134 1.01145 0.95526 0.83221 1.48125 1.49739 1.27360 1.08442 1.20427 0.77001 0.80046 0.90304 1.90695 1.56832 1.67795 1.31082 1.22046 0.97222 0.99561 0.97318 0.82563 1.22770 0.91298 0.95239 1.02894 1.21474 1.05175 0.88327 1.07988 1.22583 1.01929 1.00531 0.92643 1.22842 1.03906 0.90026 0.96912 1.21342 0.99981 0.90420 0.87887 0.92810 0.90433 0.94014 0.87982 0.90729 0.78194 0.92978 0.91422 0.90645 0.91489 0.87727 0.86618 0.89775 0.89697 0.84154 0.90422 0.88464 0.86240 0.87634 0.90661 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 8.33 127.69 1.06 1.84 16 2 N -0.53 -17.69 4.45 -901.14 -4.01 -21.70 16 3 C 0.06 2.20 5.02 85.56 0.43 2.63 16 4 C 0.44 21.60 7.51 87.66 0.66 22.26 16 5 O -0.61 -34.57 13.89 -3.05 -0.04 -34.61 16 6 N -0.59 -30.39 5.28 -306.99 -1.62 -32.01 16 7 C -0.41 -23.68 9.68 84.04 0.81 -22.87 16 8 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 9 C -0.04 -2.39 5.50 84.93 0.47 -1.92 16 10 N -0.92 -51.58 13.68 21.66 0.30 -51.29 16 11 Si 1.14 49.43 29.92 68.60 2.05 51.48 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 C 0.08 2.02 2.34 44.99 0.11 2.12 16 16 H 0.07 1.98 7.93 -2.39 -0.02 1.96 16 17 C -0.15 -2.67 4.40 30.62 0.13 -2.54 16 18 C -0.12 -1.36 6.08 30.67 0.19 -1.17 16 19 C 0.10 1.08 6.30 86.36 0.54 1.62 16 20 N -0.60 -12.13 2.97 -818.93 -2.43 -14.56 16 21 C 0.53 12.72 7.48 87.66 0.66 13.38 16 22 O -0.58 -19.99 15.66 -3.04 -0.05 -20.04 16 23 C -0.14 -2.13 4.96 -11.54 -0.06 -2.19 16 24 H 0.16 1.28 6.82 -2.39 -0.02 1.27 16 25 C -0.08 -1.09 10.24 30.62 0.31 -0.77 16 26 C -0.23 -3.74 5.06 -52.17 -0.26 -4.01 16 27 C -0.14 -2.58 10.16 30.59 0.31 -2.27 16 28 C -0.10 -1.17 10.53 30.59 0.32 -0.85 16 29 C 0.13 3.26 5.75 86.36 0.50 3.76 16 30 H 0.05 2.19 5.88 -2.39 -0.01 2.17 16 31 H 0.08 2.14 6.20 -2.39 -0.01 2.13 16 32 H 0.04 1.11 6.49 -2.38 -0.02 1.10 16 33 H 0.10 3.26 7.93 -2.39 -0.02 3.24 16 34 H 0.07 2.24 7.03 -2.39 -0.02 2.22 16 35 H 0.38 18.15 6.73 -92.71 -0.62 17.53 16 36 H 0.26 14.09 6.78 -92.70 -0.63 13.46 16 37 H 0.07 1.24 6.86 -2.39 -0.02 1.22 16 38 H 0.07 1.29 6.50 -2.39 -0.02 1.27 16 39 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.12 0.62 5.67 -2.39 -0.01 0.61 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.08 1.83 6.26 -2.39 -0.01 1.81 16 50 H 0.06 2.11 7.00 -2.39 -0.02 2.10 16 Total: -1.00 -80.51 391.04 0.85 -79.66 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.48 Total: 34.05 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 6.18 Total: 9.02 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -7.77 Total: -119.56 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -0.09 Total: -54.65 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.48 kcal Total: -80.51 0.85 -79.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567198532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.134 kcal (2) G-P(sol) polarization free energy of solvation -80.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds