Wall clock time and date at job start Tue Mar 31 2020 18:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99820 * 2 1 4 4 C 1.50698 * 109.47058 * 89.99812 * 3 2 1 5 5 O 1.21280 * 120.00410 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99821 * 179.97438 * 4 3 2 7 7 C 1.46802 * 119.57797 * 0.02562 * 6 4 3 8 8 C 1.53462 * 107.64935 * 127.97868 * 7 6 4 9 9 C 1.52740 * 108.44252 * 58.04687 * 8 7 6 10 10 C 1.53009 * 110.80277 * 296.23105 * 9 8 7 11 11 H 1.08990 * 111.39105 * 291.23392 * 10 9 8 12 12 C 1.45142 * 119.59260 * 179.91525 * 6 4 3 13 13 H 1.09002 * 110.61539 * 348.52712 * 12 6 4 14 14 C 1.54414 * 111.55188 * 111.31640 * 12 6 4 15 15 C 1.54568 * 102.44997 * 156.61042 * 14 12 6 16 16 N 1.47120 * 107.25237 * 338.33025 * 15 14 12 17 17 C 1.36937 * 125.76921 * 177.42904 * 16 15 14 18 18 H 1.07994 * 120.00328 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99552 * 359.97133 * 17 16 15 20 20 N 1.31621 * 120.00256 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99714 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47213 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47438 * 119.99852 * 21 19 17 24 24 H 1.48505 * 109.46714 * 239.99858 * 21 19 17 25 25 C 1.34781 * 119.99986 * 179.97438 * 2 1 3 26 26 O 1.21285 * 119.99888 * 180.02562 * 25 2 1 27 27 C 1.50700 * 120.00006 * 0.02562 * 25 2 1 28 28 C 1.52998 * 117.49631 * 248.74226 * 27 25 2 29 29 C 1.53001 * 117.49753 * 180.08710 * 27 25 2 30 30 H 1.08999 * 109.46669 * 90.00478 * 1 2 3 31 31 H 1.09000 * 109.47002 * 210.00342 * 1 2 3 32 32 H 1.08996 * 109.47336 * 330.00355 * 1 2 3 33 33 H 1.08998 * 109.47414 * 329.99841 * 3 2 1 34 34 H 1.09007 * 109.47118 * 209.99484 * 3 2 1 35 35 H 1.09002 * 109.83367 * 8.42266 * 7 6 4 36 36 H 1.08996 * 109.83500 * 247.53325 * 7 6 4 37 37 H 1.09002 * 109.64109 * 177.73228 * 8 7 6 38 38 H 1.09000 * 109.64092 * 298.14931 * 8 7 6 39 39 H 1.08999 * 109.21035 * 56.57408 * 9 8 7 40 40 H 1.09000 * 109.21268 * 175.89360 * 9 8 7 41 41 H 1.09002 * 110.81531 * 274.85096 * 14 12 6 42 42 H 1.09005 * 110.81242 * 38.17896 * 14 12 6 43 43 H 1.08996 * 109.88224 * 97.73907 * 15 14 12 44 44 H 1.08997 * 109.88958 * 218.75775 * 15 14 12 45 45 H 0.96997 * 119.99860 * 179.97438 * 20 19 17 46 46 H 1.08999 * 115.55143 * 34.40958 * 27 25 2 47 47 H 1.09000 * 117.49983 * 0.02562 * 28 27 25 48 48 H 1.09000 * 117.50034 * 145.01768 * 28 27 25 49 49 H 1.09000 * 117.49507 * 214.98245 * 29 27 25 50 50 H 1.09003 * 117.49862 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 8 2.0541 1.0216 2.3427 6 7 3.1115 2.8511 1.6671 7 6 3.5844 3.6701 0.5442 8 6 3.0806 5.1023 0.7684 9 6 3.6087 5.5952 2.1141 10 6 3.0399 4.7572 3.2610 11 1 1.9712 4.9298 3.3875 12 6 3.3469 3.2627 3.0389 13 1 2.7600 2.6553 3.7278 14 6 4.8444 3.1808 3.4066 15 6 4.9542 4.1801 4.5807 16 7 3.8122 5.1018 4.4776 17 6 3.5139 6.1082 5.3570 18 1 2.6485 6.7323 5.1901 19 6 4.3238 6.3260 6.4631 20 7 5.3782 5.5650 6.6669 21 14 3.9165 7.6984 7.6632 22 1 2.6894 8.4025 7.2120 23 1 3.6898 7.1240 9.0137 24 1 5.0469 8.6600 7.7175 25 6 2.1389 -1.1672 0.0005 26 8 3.3518 -1.1672 0.0010 27 6 1.3854 -2.4723 0.0005 28 6 1.4579 -3.3298 1.2656 29 6 2.2075 -3.7627 0.0032 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6084 2.0284 -0.5138 34 1 3.1500 1.1384 -0.5138 35 1 3.1852 3.2799 -0.3920 36 1 4.6739 3.6619 0.5135 37 1 3.4481 5.7488 -0.0285 38 1 1.9906 5.1106 0.7736 39 1 4.6962 5.5218 2.1213 40 1 3.3193 6.6368 2.2533 41 1 5.1096 2.1739 3.7290 42 1 5.4667 3.4938 2.5683 43 1 4.9135 3.6439 5.5288 44 1 5.8895 4.7352 4.5089 45 1 5.9444 5.7175 7.4396 46 1 0.4479 -2.4740 -0.5556 47 1 2.0501 -2.9498 2.0979 48 1 0.5682 -3.8959 1.5415 49 1 1.8108 -4.6133 -0.5510 50 1 3.2934 -3.6676 0.0045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569909473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:39 Heat of formation + Delta-G solvation = -0.163919 kcal Electronic energy + Delta-G solvation = -30439.046261 eV Core-core repulsion = 26468.418513 eV Total energy + Delta-G solvation = -3970.627748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.71901 -39.87541 -38.00006 -36.38469 -35.49312 -35.26753 -32.39703 -32.28035 -29.80377 -28.74987 -28.04225 -26.80922 -24.86174 -24.27705 -23.60059 -22.65604 -21.99219 -20.49842 -19.96047 -19.04248 -18.12931 -17.76417 -17.33595 -16.87485 -16.44880 -15.65129 -15.43140 -14.89286 -14.76248 -14.67460 -14.32637 -14.13198 -13.85997 -13.50081 -13.36849 -13.13615 -12.97208 -12.82288 -12.57943 -12.45256 -12.12441 -12.04448 -11.82346 -11.77233 -11.36534 -11.03517 -10.98317 -10.84594 -10.79541 -10.75062 -10.64949 -10.48684 -10.11454 -10.04795 -9.99472 -9.80179 -9.62613 -9.59475 -8.78446 -8.61990 -8.25770 -6.85566 -5.70481 -3.04863 2.28462 2.61402 2.75261 3.27335 3.40239 3.45582 3.48053 3.64532 4.24047 4.48274 4.52537 4.53693 4.64813 4.78387 4.85091 4.89460 4.96481 5.11006 5.14378 5.24802 5.28847 5.37337 5.38315 5.46070 5.48772 5.49573 5.58362 5.65444 5.68841 5.73416 5.89260 5.89867 5.99626 6.09606 6.12767 6.23056 6.30162 6.37435 6.55198 6.59983 6.73709 6.99542 7.07102 7.11035 7.56201 7.59964 7.64734 7.83804 7.99629 8.23790 8.36363 9.20941 9.80767 10.46874 11.40702 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020057 B = 0.002765 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.653236 B =10125.233875 C =10661.791045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.098 3.902 4 C 0.494 3.506 5 O -0.534 6.534 6 N -0.591 5.591 7 C 0.106 3.894 8 C -0.132 4.132 9 C -0.130 4.130 10 C 0.157 3.843 11 H 0.058 0.942 12 C 0.131 3.869 13 H 0.100 0.900 14 C -0.152 4.152 15 C 0.181 3.819 16 N -0.598 5.598 17 C -0.226 4.226 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.550 3.450 26 O -0.536 6.536 27 C -0.193 4.193 28 C -0.149 4.149 29 C -0.149 4.149 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.252 0.748 46 H 0.124 0.876 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 -12.033 -19.150 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C -0.029 4.029 4 C 0.280 3.720 5 O -0.410 6.410 6 N -0.324 5.324 7 C -0.017 4.017 8 C -0.171 4.171 9 C -0.170 4.170 10 C 0.049 3.951 11 H 0.076 0.924 12 C 0.027 3.973 13 H 0.118 0.882 14 C -0.191 4.191 15 C 0.056 3.944 16 N -0.322 5.322 17 C -0.354 4.354 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.339 3.661 26 O -0.413 6.413 27 C -0.214 4.214 28 C -0.186 4.186 29 C -0.187 4.187 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.142 0.858 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.118 -12.293 -18.414 23.944 hybrid contribution -0.190 1.010 0.670 1.227 sum -9.308 -11.282 -17.744 22.995 Atomic orbital electron populations 1.21810 0.78719 1.04054 1.01403 1.47297 1.07204 1.04785 1.73724 1.21384 0.99945 0.86429 0.95133 1.21074 0.78185 0.80975 0.91789 1.90685 1.51114 1.53223 1.46002 1.47628 1.55555 1.21869 1.07336 1.21857 0.99944 0.91646 0.88276 1.21926 1.00970 0.95073 0.99146 1.22119 1.01260 1.00460 0.93182 1.21303 0.95391 0.90516 0.87924 0.92393 1.21741 0.97504 0.96970 0.81113 0.88215 1.23118 0.95124 1.00568 1.00318 1.21160 0.90857 0.88958 0.93406 1.44697 1.27255 1.36176 1.24086 1.19070 1.08550 1.06432 1.01362 0.90403 1.24808 0.97554 0.99454 0.98597 1.69973 1.16882 1.40233 1.29667 0.86052 0.77391 0.81245 0.81098 1.20545 1.21772 1.21804 1.19684 0.87259 0.84318 0.74888 1.90699 1.13930 1.87146 1.49480 1.22155 1.02539 0.90584 1.06158 1.22962 1.03195 1.00950 0.91540 1.22974 1.00120 0.95053 1.00524 0.92405 0.90538 0.90825 0.87523 0.86992 0.90381 0.91018 0.91251 0.91840 0.91799 0.92121 0.92154 0.92300 0.93092 0.94042 0.93782 0.85838 0.87957 0.87736 0.87943 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.01 59.85 0.60 1.24 16 2 N -0.60 -6.80 2.36 -182.95 -0.43 -7.23 16 3 C 0.10 1.11 4.20 -5.19 -0.02 1.09 16 4 C 0.49 7.77 7.72 -10.99 -0.08 7.68 16 5 O -0.53 -10.54 15.78 5.56 0.09 -10.45 16 6 N -0.59 -9.15 2.73 -165.03 -0.45 -9.60 16 7 C 0.11 1.24 6.05 -3.64 -0.02 1.22 16 8 C -0.13 -1.62 6.11 -26.63 -0.16 -1.79 16 9 C -0.13 -2.23 5.10 -26.86 -0.14 -2.37 16 10 C 0.16 3.19 3.59 -66.39 -0.24 2.96 16 11 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 12 C 0.13 2.52 3.08 -67.30 -0.21 2.31 16 13 H 0.10 2.20 7.00 -51.93 -0.36 1.83 16 14 C -0.15 -3.06 6.07 -25.17 -0.15 -3.21 16 15 C 0.18 4.48 5.19 -2.88 -0.01 4.46 16 16 N -0.60 -15.04 2.91 -162.26 -0.47 -15.52 16 17 C -0.23 -6.23 10.29 -15.06 -0.16 -6.38 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -27.17 10.33 55.49 0.57 -26.59 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C 0.55 7.22 7.46 -10.98 -0.08 7.14 16 26 O -0.54 -9.07 15.84 5.55 0.09 -8.98 16 27 C -0.19 -1.83 4.79 -91.77 -0.44 -2.27 16 28 C -0.15 -1.36 10.24 -26.70 -0.27 -1.63 16 29 C -0.15 -1.31 10.05 -26.70 -0.27 -1.57 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.54 6.64 -51.93 -0.34 0.19 16 32 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.11 0.82 7.54 -51.93 -0.39 0.43 16 34 H 0.11 1.27 7.21 -51.93 -0.37 0.90 16 35 H 0.08 0.65 5.82 -51.93 -0.30 0.35 16 36 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.19 7.13 -51.93 -0.37 0.81 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.09 6.82 -51.93 -0.35 0.74 16 43 H 0.05 1.41 7.30 -51.93 -0.38 1.04 16 44 H 0.04 1.12 7.60 -51.93 -0.39 0.72 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.12 0.81 7.27 -51.93 -0.38 0.43 16 47 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 48 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.11 1.14 7.67 -51.93 -0.40 0.74 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -35.41 389.27 -9.73 -45.14 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.21 Total: 1.65 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -1.76 Total: 8.57 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.78 Total: -58.94 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.18 Total: -19.44 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.41 -9.73 -45.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569909473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.973 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds