Wall clock time and date at job start Tue Mar 31 2020 18:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46500 * 120.00343 * 2 1 4 4 C 1.50700 * 109.46810 * 269.99840 * 3 2 1 5 5 O 1.21279 * 120.00401 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99635 * 180.02562 * 4 3 2 7 7 C 1.47844 * 122.23198 * 359.97438 * 6 4 3 8 8 C 1.52716 * 111.06011 * 127.49569 * 7 6 4 9 9 C 1.53866 * 111.52761 * 48.52895 * 8 7 6 10 10 C 1.51084 * 107.34039 * 303.07435 * 9 8 7 11 11 H 1.08998 * 108.74233 * 308.53194 * 10 9 8 12 12 C 1.45730 * 122.22675 * 179.71341 * 6 4 3 13 13 H 1.08996 * 111.07305 * 119.50474 * 12 6 4 14 14 C 1.53430 * 116.37724 * 350.13025 * 12 6 4 15 15 C 1.55470 * 101.67529 * 207.27875 * 14 12 6 16 16 N 1.45027 * 119.18676 * 183.25881 * 10 9 8 17 17 C 1.36943 * 126.55920 * 28.77776 * 16 10 9 18 18 H 1.07998 * 119.99568 * 352.92151 * 17 16 10 19 19 C 1.38804 * 119.99873 * 172.91259 * 17 16 10 20 20 N 1.31625 * 120.00083 * 5.64592 * 19 17 16 21 21 Si 1.86803 * 120.00087 * 185.63807 * 19 17 16 22 22 H 1.48507 * 109.46851 * 94.99500 * 21 19 17 23 23 H 1.48499 * 109.47268 * 214.99342 * 21 19 17 24 24 H 1.48496 * 109.47276 * 334.99822 * 21 19 17 25 25 C 1.34782 * 120.00152 * 179.97438 * 2 1 3 26 26 O 1.21277 * 120.00535 * 180.02562 * 25 2 1 27 27 C 1.50704 * 119.99655 * 0.02562 * 25 2 1 28 28 C 1.53003 * 117.49622 * 248.61978 * 27 25 2 29 29 C 1.52994 * 117.49609 * 179.97438 * 27 25 2 30 30 H 1.09004 * 109.47540 * 270.00133 * 1 2 3 31 31 H 1.09004 * 109.47250 * 30.00313 * 1 2 3 32 32 H 1.09003 * 109.47465 * 150.00048 * 1 2 3 33 33 H 1.09004 * 109.47253 * 29.99508 * 3 2 1 34 34 H 1.08996 * 109.47432 * 149.99907 * 3 2 1 35 35 H 1.09001 * 109.16181 * 247.89968 * 7 6 4 36 36 H 1.09001 * 109.16165 * 7.13676 * 7 6 4 37 37 H 1.09002 * 109.07394 * 169.05899 * 8 7 6 38 38 H 1.09006 * 109.06706 * 288.07011 * 8 7 6 39 39 H 1.09000 * 109.88509 * 62.53644 * 9 8 7 40 40 H 1.09001 * 109.88113 * 183.62003 * 9 8 7 41 41 H 1.09004 * 110.99164 * 325.37367 * 14 12 6 42 42 H 1.09005 * 110.98457 * 89.17850 * 14 12 6 43 43 H 1.08999 * 109.96154 * 141.98371 * 15 14 12 44 44 H 1.09000 * 109.96003 * 263.18740 * 15 14 12 45 45 H 0.97000 * 119.99931 * 179.97438 * 20 19 17 46 46 H 1.08997 * 115.56195 * 34.30391 * 27 25 2 47 47 H 1.08995 * 117.49870 * 359.97438 * 28 27 25 48 48 H 1.08999 * 117.49955 * 145.02161 * 28 27 25 49 49 H 1.09006 * 117.49980 * 214.97207 * 29 27 25 50 50 H 1.08993 * 117.50242 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 8 2.0550 1.0209 -2.3427 6 7 3.1118 2.8509 -1.6671 7 6 3.6137 3.7202 -0.5816 8 6 5.0978 4.0284 -0.7673 9 6 5.4040 4.4863 -2.2040 10 6 4.9309 3.3945 -3.1351 11 1 5.3503 2.4449 -2.8028 12 6 3.3866 3.3144 -3.0211 13 1 2.9255 4.2849 -3.2043 14 6 3.0927 2.3223 -4.1540 15 6 4.0966 2.7861 -5.2467 16 7 5.1612 3.5315 -4.5604 17 6 6.1881 4.2114 -5.1591 18 1 6.8616 4.8079 -4.5616 19 6 6.3635 4.1338 -6.5338 20 7 5.4804 3.4990 -7.2751 21 14 7.8528 4.9304 -7.3319 22 1 8.9279 3.9187 -7.4941 23 1 7.4732 5.4670 -8.6635 24 1 8.3415 6.0385 -6.4726 25 6 2.1389 -1.1672 0.0005 26 8 3.3516 -1.1673 0.0010 27 6 1.3853 -2.4723 0.0005 28 6 1.4601 -3.3312 1.2645 29 6 2.2074 -3.7626 0.0005 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1384 0.5138 35 1 3.0516 4.6540 -0.5823 36 1 3.4704 3.2172 0.3747 37 1 5.3874 4.8171 -0.0729 38 1 5.6778 3.1316 -0.5492 39 1 4.8720 5.4131 -2.4190 40 1 6.4768 4.6371 -2.3244 41 1 3.3014 1.2992 -3.8411 42 1 2.0642 2.4204 -4.5018 43 1 4.5061 1.9204 -5.7674 44 1 3.5961 3.4445 -5.9566 45 1 5.6028 3.4450 -8.2359 46 1 0.4469 -2.4736 -0.5540 47 1 2.0546 -2.9525 2.0959 48 1 0.5709 -3.8976 1.5415 49 1 1.8096 -4.6129 -0.5537 50 1 3.2932 -3.6677 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569909475.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:45 Heat of formation + Delta-G solvation = 8.020933 kcal Electronic energy + Delta-G solvation = -30636.731990 eV Core-core repulsion = 26666.459164 eV Total energy + Delta-G solvation = -3970.272826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.67624 -39.86287 -37.84644 -36.35109 -35.46267 -35.44416 -32.57232 -32.22493 -29.79672 -28.49599 -28.13448 -26.77240 -24.78836 -24.43779 -23.43438 -22.66342 -21.47353 -20.90167 -19.72333 -19.22019 -18.71657 -17.72723 -16.99085 -16.45076 -16.27300 -15.51287 -15.42241 -14.99768 -14.77452 -14.61011 -14.31926 -14.10825 -13.91660 -13.46255 -13.36279 -13.19574 -12.97370 -12.84528 -12.44855 -12.41436 -12.24269 -11.94323 -11.79810 -11.77830 -11.54764 -11.10228 -10.84150 -10.82487 -10.72416 -10.68891 -10.51203 -10.42620 -10.06143 -9.97311 -9.93913 -9.79913 -9.58037 -9.37311 -8.64791 -8.48210 -8.19140 -6.77115 -5.67111 -3.01074 2.31043 2.68214 2.82895 3.28155 3.42921 3.47866 3.49892 3.63836 4.25899 4.50908 4.52637 4.56444 4.63854 4.76361 4.83772 4.91413 4.97837 5.09974 5.19481 5.26025 5.30345 5.30710 5.40922 5.43952 5.48704 5.57020 5.59545 5.65983 5.70379 5.80656 5.90596 5.92217 6.02972 6.11136 6.15969 6.30332 6.33260 6.43662 6.60637 6.76957 6.83070 6.94315 7.14598 7.23872 7.63673 7.69222 7.75991 7.89046 8.04799 8.31445 8.45182 9.25326 9.88201 10.56093 11.44891 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.002984 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.093053 B = 9379.843680 C = 9971.045599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.597 5.597 3 C 0.097 3.903 4 C 0.500 3.500 5 O -0.522 6.522 6 N -0.600 5.600 7 C 0.111 3.889 8 C -0.131 4.131 9 C -0.114 4.114 10 C 0.157 3.843 11 H 0.018 0.982 12 C 0.117 3.883 13 H 0.079 0.921 14 C -0.128 4.128 15 C 0.175 3.825 16 N -0.591 5.591 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.549 3.451 26 O -0.534 6.534 27 C -0.192 4.192 28 C -0.153 4.153 29 C -0.148 4.148 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.050 0.950 45 H 0.252 0.748 46 H 0.126 0.874 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 -6.210 20.954 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.330 5.330 3 C -0.030 4.030 4 C 0.286 3.714 5 O -0.398 6.398 6 N -0.334 5.334 7 C -0.012 4.012 8 C -0.169 4.169 9 C -0.153 4.153 10 C 0.048 3.952 11 H 0.035 0.965 12 C 0.013 3.987 13 H 0.097 0.903 14 C -0.167 4.167 15 C 0.050 3.950 16 N -0.316 5.316 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.338 3.662 26 O -0.410 6.410 27 C -0.213 4.213 28 C -0.190 4.190 29 C -0.185 4.185 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.144 0.856 47 H 0.116 0.884 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.094 -6.555 20.229 24.463 hybrid contribution 0.694 0.635 -0.604 1.118 sum -11.400 -5.920 19.625 23.455 Atomic orbital electron populations 1.21810 0.78775 1.03832 1.01434 1.47283 1.07144 1.04781 1.73746 1.21377 0.99785 0.86426 0.95390 1.20922 0.78325 0.80551 0.91644 1.90700 1.50775 1.52981 1.45372 1.48039 1.55363 1.22206 1.07804 1.21708 0.95517 0.94476 0.89480 1.21905 0.95098 1.01718 0.98225 1.21403 1.01889 0.99115 0.92863 1.20689 0.91902 0.95814 0.86813 0.96459 1.22318 0.98090 0.97613 0.80704 0.90327 1.22953 0.99611 0.99134 0.94984 1.21469 0.86757 0.95463 0.91337 1.43758 1.29259 1.59915 0.98640 1.18999 1.04021 1.22185 0.90430 0.90365 1.24835 0.98627 1.00572 0.96274 1.69981 1.34816 1.46986 1.04702 0.86142 0.82513 0.78544 0.78815 1.21659 1.21794 1.20654 1.19644 0.87258 0.84303 0.74997 1.90712 1.13893 1.87091 1.49308 1.22200 1.02858 0.90682 1.05513 1.22932 1.03175 1.01552 0.91359 1.22976 1.00248 0.95339 0.99964 0.92389 0.90960 0.90657 0.87783 0.87155 0.91381 0.90618 0.90837 0.91691 0.91794 0.91431 0.90113 0.92325 0.94201 0.93137 0.93751 0.85614 0.88352 0.87824 0.87846 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.26 59.84 0.61 1.27 16 2 N -0.60 -6.98 2.36 -182.95 -0.43 -7.41 16 3 C 0.10 1.13 4.31 -5.19 -0.02 1.11 16 4 C 0.50 8.04 7.76 -10.98 -0.09 7.96 16 5 O -0.52 -10.38 13.27 5.56 0.07 -10.30 16 6 N -0.60 -9.46 2.92 -164.26 -0.48 -9.94 16 7 C 0.11 1.28 6.32 -3.45 -0.02 1.26 16 8 C -0.13 -1.68 5.93 -26.43 -0.16 -1.83 16 9 C -0.11 -1.99 5.41 -27.24 -0.15 -2.13 16 10 C 0.16 3.40 2.58 -68.59 -0.18 3.22 16 11 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 12 C 0.12 2.28 3.31 -67.03 -0.22 2.06 16 13 H 0.08 1.53 8.13 -51.93 -0.42 1.11 16 14 C -0.13 -2.85 5.01 -25.20 -0.13 -2.98 16 15 C 0.17 4.58 5.40 -2.47 -0.01 4.57 16 16 N -0.59 -15.62 3.30 -164.69 -0.54 -16.16 16 17 C -0.23 -6.43 9.95 -15.06 -0.15 -6.58 16 18 H 0.08 2.11 7.30 -52.49 -0.38 1.73 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -27.77 10.44 55.49 0.58 -27.19 16 21 Si 0.91 22.51 29.56 -169.99 -5.02 17.49 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 C 0.55 7.53 7.46 -10.98 -0.08 7.44 16 26 O -0.53 -9.48 15.84 5.56 0.09 -9.39 16 27 C -0.19 -1.91 5.29 -91.77 -0.49 -2.40 16 28 C -0.15 -1.16 10.24 -26.70 -0.27 -1.43 16 29 C -0.15 -1.39 10.05 -26.71 -0.27 -1.66 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.07 0.53 6.00 -51.93 -0.31 0.22 16 33 H 0.10 0.81 7.95 -51.93 -0.41 0.40 16 34 H 0.11 1.32 7.03 -51.93 -0.37 0.96 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.64 6.18 -51.93 -0.32 0.32 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 40 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 41 H 0.08 1.94 6.21 -51.93 -0.32 1.62 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.04 1.16 7.65 -51.93 -0.40 0.76 16 44 H 0.05 1.43 7.34 -51.93 -0.38 1.05 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.13 1.02 6.44 -51.93 -0.33 0.69 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.11 1.23 7.67 -51.93 -0.40 0.84 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -36.64 387.09 -9.84 -46.49 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.23 Total: 1.00 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.71 Total: 9.59 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.88 Total: -60.70 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.16 Total: -19.69 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.64 -9.84 -46.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569909475.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.506 kcal (2) G-P(sol) polarization free energy of solvation -36.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds