Wall clock time and date at job start Tue Mar 31 2020 18:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99818 * 2 1 4 4 C 1.50700 * 109.47250 * 89.99467 * 3 2 1 5 5 O 1.21282 * 120.00323 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00060 * 180.02562 * 4 3 2 7 7 C 1.46802 * 119.57593 * 359.97438 * 6 4 3 8 8 C 1.53462 * 107.64935 * 232.09111 * 7 6 4 9 9 C 1.52739 * 108.43879 * 301.88457 * 8 7 6 10 10 C 1.53009 * 110.80599 * 63.77059 * 9 8 7 11 11 H 1.09001 * 111.38915 * 69.72752 * 10 9 8 12 12 C 1.45248 * 119.66630 * 180.02562 * 6 4 3 13 13 H 1.09006 * 110.58203 * 11.43637 * 12 6 4 14 14 C 1.54416 * 111.59106 * 248.64469 * 12 6 4 15 15 C 1.54567 * 102.45266 * 203.38439 * 14 12 6 16 16 N 1.47121 * 107.25145 * 21.66584 * 15 14 12 17 17 C 1.36935 * 125.76866 * 182.57134 * 16 15 14 18 18 H 1.07994 * 120.00393 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99726 * 0.02701 * 17 16 15 20 20 N 1.31618 * 120.00125 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99813 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47220 * 90.00698 * 21 19 17 23 23 H 1.48501 * 109.47006 * 210.00249 * 21 19 17 24 24 H 1.48496 * 109.47285 * 330.00246 * 21 19 17 25 25 C 1.34773 * 120.00031 * 179.97438 * 2 1 3 26 26 O 1.21283 * 120.00087 * 180.02562 * 25 2 1 27 27 C 1.50694 * 120.00395 * 0.02562 * 25 2 1 28 28 C 1.52998 * 117.50063 * 248.62394 * 27 25 2 29 29 C 1.53000 * 117.50344 * 179.97438 * 27 25 2 30 30 H 1.09007 * 109.46880 * 90.00477 * 1 2 3 31 31 H 1.09003 * 109.47323 * 210.00105 * 1 2 3 32 32 H 1.08996 * 109.47728 * 330.00575 * 1 2 3 33 33 H 1.08997 * 109.47175 * 329.99407 * 3 2 1 34 34 H 1.08997 * 109.47100 * 209.99776 * 3 2 1 35 35 H 1.09002 * 109.83367 * 112.53509 * 7 6 4 36 36 H 1.08996 * 109.83500 * 351.64568 * 7 6 4 37 37 H 1.09001 * 109.64187 * 61.56466 * 8 7 6 38 38 H 1.08995 * 109.64326 * 181.98733 * 8 7 6 39 39 H 1.09002 * 109.20937 * 184.11147 * 9 8 7 40 40 H 1.09000 * 109.21027 * 303.46783 * 9 8 7 41 41 H 1.09006 * 110.81401 * 85.14334 * 14 12 6 42 42 H 1.08995 * 110.97990 * 321.70452 * 14 12 6 43 43 H 1.08994 * 109.88491 * 262.25843 * 15 14 12 44 44 H 1.08995 * 109.88294 * 141.07899 * 15 14 12 45 45 H 0.96994 * 120.00288 * 180.02562 * 20 19 17 46 46 H 1.09006 * 115.54917 * 34.32533 * 27 25 2 47 47 H 1.09002 * 117.50094 * 359.97438 * 28 27 25 48 48 H 1.09005 * 117.50306 * 145.01631 * 28 27 25 49 49 H 1.08995 * 117.50158 * 214.97906 * 29 27 25 50 50 H 1.09004 * 117.49630 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 1.4208 5 8 2.0540 1.0217 2.3427 6 7 3.1106 2.8517 1.6671 7 6 3.5835 3.6707 0.5442 8 6 5.0760 3.9491 0.7676 9 6 5.2399 4.6539 2.1127 10 6 4.7981 3.7438 3.2605 11 1 5.4904 2.9132 3.3984 12 6 3.3490 3.2639 3.0393 13 1 3.1153 2.4529 3.7291 14 6 2.5306 4.5211 3.4053 15 6 3.3413 5.1166 4.5789 16 7 4.7100 4.5869 4.4768 17 6 5.7307 4.8318 5.3561 18 1 6.7035 4.3932 5.1900 19 6 5.5150 5.6438 6.4611 20 7 4.3293 6.1779 6.6639 21 14 6.9072 5.9773 7.6611 22 1 7.6537 7.1863 7.2295 23 1 6.3479 6.1994 9.0187 24 1 7.8265 4.8115 7.6891 25 6 2.1389 -1.1672 0.0005 26 8 3.3517 -1.1672 0.0010 27 6 1.3855 -2.4723 0.0005 28 6 1.4602 -3.3311 1.2645 29 6 2.2076 -3.7627 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.6084 2.0283 -0.5139 34 1 3.1499 1.1384 -0.5138 35 1 3.0323 4.6106 0.5141 36 1 3.4442 3.1303 -0.3921 37 1 5.6267 3.0085 0.7773 38 1 5.4535 4.5865 -0.0320 39 1 6.2871 4.9232 2.2512 40 1 4.6330 5.5592 2.1195 41 1 1.5255 4.2487 3.7278 42 1 2.4912 5.2185 2.5686 43 1 2.8968 4.8149 5.5273 44 1 3.3579 6.2038 4.5040 45 1 4.1786 6.7456 7.4358 46 1 0.4473 -2.4735 -0.5544 47 1 2.0547 -2.9524 2.0960 48 1 0.5710 -3.8976 1.5415 49 1 1.8099 -4.6128 -0.5537 50 1 3.2935 -3.6676 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569909476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:49 Heat of formation + Delta-G solvation = -0.099535 kcal Electronic energy + Delta-G solvation = -30464.793122 eV Core-core repulsion = 26494.168167 eV Total energy + Delta-G solvation = -3970.624956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.71352 -39.86505 -37.99485 -36.38344 -35.49159 -35.25933 -32.38115 -32.27399 -29.80073 -28.75384 -28.02970 -26.80921 -24.85882 -24.26718 -23.60080 -22.65050 -21.97180 -20.49922 -19.96787 -19.02584 -18.13451 -17.75119 -17.35325 -16.86544 -16.43622 -15.64741 -15.38777 -14.96173 -14.74671 -14.57017 -14.43555 -14.11178 -13.82348 -13.52364 -13.34302 -13.13584 -12.94339 -12.82625 -12.60462 -12.42985 -12.14070 -12.01378 -11.82424 -11.76919 -11.36839 -11.02138 -10.96830 -10.84324 -10.78666 -10.74647 -10.62191 -10.48599 -10.10885 -10.06935 -9.99244 -9.80308 -9.61062 -9.59606 -8.78305 -8.61137 -8.26206 -6.84746 -5.69864 -3.03784 2.28668 2.61491 2.75158 3.27438 3.41510 3.46846 3.48672 3.64901 4.24002 4.49618 4.53157 4.53925 4.65199 4.78383 4.86851 4.90450 4.95182 5.11636 5.16055 5.25023 5.30038 5.37600 5.39681 5.45956 5.49016 5.49674 5.58965 5.64309 5.69466 5.73773 5.87713 5.90304 6.01410 6.11540 6.13307 6.23056 6.34144 6.37107 6.50570 6.60950 6.76162 6.99900 7.07817 7.11026 7.55946 7.59483 7.64101 7.83304 7.99942 8.24427 8.36352 9.22034 9.81568 10.47597 11.41462 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.002812 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.357762 B = 9955.233848 C =10344.535371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.098 3.902 4 C 0.494 3.506 5 O -0.534 6.534 6 N -0.591 5.591 7 C 0.106 3.894 8 C -0.134 4.134 9 C -0.129 4.129 10 C 0.155 3.845 11 H 0.059 0.941 12 C 0.132 3.868 13 H 0.100 0.900 14 C -0.151 4.151 15 C 0.181 3.819 16 N -0.598 5.598 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.550 3.450 26 O -0.536 6.536 27 C -0.193 4.193 28 C -0.149 4.149 29 C -0.149 4.149 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.252 0.748 46 H 0.124 0.876 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 -11.954 -19.139 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C -0.029 4.029 4 C 0.280 3.720 5 O -0.410 6.410 6 N -0.324 5.324 7 C -0.017 4.017 8 C -0.173 4.173 9 C -0.169 4.169 10 C 0.047 3.953 11 H 0.077 0.923 12 C 0.028 3.972 13 H 0.118 0.882 14 C -0.190 4.190 15 C 0.056 3.944 16 N -0.323 5.323 17 C -0.354 4.354 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.338 3.662 26 O -0.412 6.412 27 C -0.214 4.214 28 C -0.186 4.186 29 C -0.187 4.187 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.142 0.858 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.405 -12.177 -18.394 23.981 hybrid contribution 0.559 0.592 0.662 1.050 sum -8.846 -11.585 -17.732 22.954 Atomic orbital electron populations 1.21808 0.78733 1.04037 1.01393 1.47294 1.07195 1.04787 1.73746 1.21382 0.99911 0.86468 0.95127 1.21075 0.78325 0.80822 0.91789 1.90686 1.50959 1.53383 1.45999 1.47661 1.55438 1.21982 1.07347 1.21853 0.95894 0.95596 0.88336 1.21929 0.94922 1.01376 0.99054 1.22105 1.02026 0.99561 0.93206 1.21369 0.93088 0.92975 0.87881 0.92276 1.21746 0.96683 0.97641 0.81125 0.88228 1.23109 0.98936 0.96601 1.00359 1.21166 0.83230 0.96631 0.93381 1.44728 1.08572 1.54833 1.24156 1.19042 0.90138 1.24756 1.01418 0.90449 1.24793 0.97021 0.99999 0.98582 1.69953 1.20453 1.36683 1.29853 0.86119 0.81055 0.78022 0.80575 1.21663 1.21705 1.20692 1.19681 0.87265 0.84318 0.74899 1.90701 1.13924 1.87138 1.49442 1.22153 1.02524 0.90574 1.06179 1.22961 1.03201 1.00939 0.91548 1.22973 1.00138 0.95054 1.00514 0.92414 0.90540 0.90845 0.87582 0.86930 0.91049 0.90383 0.91697 0.91235 0.92124 0.91848 0.92200 0.92310 0.93088 0.94069 0.93767 0.85843 0.87952 0.87738 0.87943 0.87431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.01 59.85 0.60 1.24 16 2 N -0.60 -6.80 2.36 -182.96 -0.43 -7.23 16 3 C 0.10 1.11 4.20 -5.19 -0.02 1.09 16 4 C 0.49 7.76 7.73 -10.99 -0.08 7.68 16 5 O -0.53 -10.54 15.78 5.56 0.09 -10.45 16 6 N -0.59 -9.15 2.74 -164.91 -0.45 -9.60 16 7 C 0.11 1.25 6.05 -3.64 -0.02 1.23 16 8 C -0.13 -1.76 6.11 -26.63 -0.16 -1.92 16 9 C -0.13 -2.27 5.10 -26.86 -0.14 -2.41 16 10 C 0.16 3.24 3.60 -66.31 -0.24 3.00 16 11 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 12 C 0.13 2.55 3.08 -67.21 -0.21 2.34 16 13 H 0.10 2.22 7.01 -51.93 -0.36 1.85 16 14 C -0.15 -2.91 6.07 -25.17 -0.15 -3.06 16 15 C 0.18 4.41 5.19 -2.88 -0.01 4.40 16 16 N -0.60 -15.18 2.91 -162.15 -0.47 -15.65 16 17 C -0.23 -6.28 10.29 -15.06 -0.15 -6.43 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -27.17 10.33 55.49 0.57 -26.60 16 21 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.55 7.24 7.46 -10.99 -0.08 7.15 16 26 O -0.54 -9.10 15.84 5.55 0.09 -9.01 16 27 C -0.19 -1.83 4.80 -91.78 -0.44 -2.27 16 28 C -0.15 -1.36 10.24 -26.71 -0.27 -1.64 16 29 C -0.15 -1.31 10.05 -26.71 -0.27 -1.58 16 30 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.08 0.53 6.64 -51.93 -0.34 0.19 16 32 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.11 0.81 7.86 -51.93 -0.41 0.40 16 34 H 0.11 1.28 6.89 -51.93 -0.36 0.93 16 35 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 36 H 0.08 0.67 5.82 -51.93 -0.30 0.37 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.18 7.12 -51.93 -0.37 0.81 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.03 6.82 -51.93 -0.35 0.67 16 43 H 0.05 1.40 7.30 -51.93 -0.38 1.02 16 44 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 46 H 0.12 0.81 7.26 -51.93 -0.38 0.43 16 47 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.11 1.15 7.67 -51.93 -0.40 0.75 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -35.49 389.30 -9.73 -45.23 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.21 Total: 1.62 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -1.76 Total: 8.49 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.78 Total: -59.08 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.18 Total: -19.46 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.49 -9.73 -45.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569909476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.126 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds