Wall clock time and date at job start Tue Mar 31 2020 18:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99818 * 2 1 4 4 C 1.50700 * 109.47250 * 89.99467 * 3 2 1 5 5 O 1.21282 * 120.00323 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00060 * 180.02562 * 4 3 2 7 7 C 1.46802 * 119.57593 * 359.97438 * 6 4 3 8 8 C 1.53462 * 107.64935 * 232.09111 * 7 6 4 9 9 C 1.52739 * 108.43879 * 301.88457 * 8 7 6 10 10 C 1.53009 * 110.80599 * 63.77059 * 9 8 7 11 11 H 1.09001 * 111.38915 * 69.72752 * 10 9 8 12 12 C 1.45248 * 119.66630 * 180.02562 * 6 4 3 13 13 H 1.09006 * 110.58203 * 11.43637 * 12 6 4 14 14 C 1.54416 * 111.59106 * 248.64469 * 12 6 4 15 15 C 1.54567 * 102.45266 * 203.38439 * 14 12 6 16 16 N 1.47121 * 107.25145 * 21.66584 * 15 14 12 17 17 C 1.36935 * 125.76866 * 182.57134 * 16 15 14 18 18 H 1.07994 * 120.00393 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99726 * 0.02701 * 17 16 15 20 20 N 1.31618 * 120.00125 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99813 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47220 * 90.00698 * 21 19 17 23 23 H 1.48501 * 109.47006 * 210.00249 * 21 19 17 24 24 H 1.48496 * 109.47285 * 330.00246 * 21 19 17 25 25 C 1.34773 * 120.00031 * 179.97438 * 2 1 3 26 26 O 1.21283 * 120.00087 * 180.02562 * 25 2 1 27 27 C 1.50694 * 120.00395 * 0.02562 * 25 2 1 28 28 C 1.52998 * 117.50063 * 248.62394 * 27 25 2 29 29 C 1.53000 * 117.50344 * 179.97438 * 27 25 2 30 30 H 1.09007 * 109.46880 * 90.00477 * 1 2 3 31 31 H 1.09003 * 109.47323 * 210.00105 * 1 2 3 32 32 H 1.08996 * 109.47728 * 330.00575 * 1 2 3 33 33 H 1.08997 * 109.47175 * 329.99407 * 3 2 1 34 34 H 1.08997 * 109.47100 * 209.99776 * 3 2 1 35 35 H 1.09002 * 109.83367 * 112.53509 * 7 6 4 36 36 H 1.08996 * 109.83500 * 351.64568 * 7 6 4 37 37 H 1.09001 * 109.64187 * 61.56466 * 8 7 6 38 38 H 1.08995 * 109.64326 * 181.98733 * 8 7 6 39 39 H 1.09002 * 109.20937 * 184.11147 * 9 8 7 40 40 H 1.09000 * 109.21027 * 303.46783 * 9 8 7 41 41 H 1.09006 * 110.81401 * 85.14334 * 14 12 6 42 42 H 1.08995 * 110.97990 * 321.70452 * 14 12 6 43 43 H 1.08994 * 109.88491 * 262.25843 * 15 14 12 44 44 H 1.08995 * 109.88294 * 141.07899 * 15 14 12 45 45 H 0.96994 * 120.00288 * 180.02562 * 20 19 17 46 46 H 1.09006 * 115.54917 * 34.32533 * 27 25 2 47 47 H 1.09002 * 117.50094 * 359.97438 * 28 27 25 48 48 H 1.09005 * 117.50306 * 145.01631 * 28 27 25 49 49 H 1.08995 * 117.50158 * 214.97906 * 29 27 25 50 50 H 1.09004 * 117.49630 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 1.4208 5 8 2.0540 1.0217 2.3427 6 7 3.1106 2.8517 1.6671 7 6 3.5835 3.6707 0.5442 8 6 5.0760 3.9491 0.7676 9 6 5.2399 4.6539 2.1127 10 6 4.7981 3.7438 3.2605 11 1 5.4904 2.9132 3.3984 12 6 3.3490 3.2639 3.0393 13 1 3.1153 2.4529 3.7291 14 6 2.5306 4.5211 3.4053 15 6 3.3413 5.1166 4.5789 16 7 4.7100 4.5869 4.4768 17 6 5.7307 4.8318 5.3561 18 1 6.7035 4.3932 5.1900 19 6 5.5150 5.6438 6.4611 20 7 4.3293 6.1779 6.6639 21 14 6.9072 5.9773 7.6611 22 1 7.6537 7.1863 7.2295 23 1 6.3479 6.1994 9.0187 24 1 7.8265 4.8115 7.6891 25 6 2.1389 -1.1672 0.0005 26 8 3.3517 -1.1672 0.0010 27 6 1.3855 -2.4723 0.0005 28 6 1.4602 -3.3311 1.2645 29 6 2.2076 -3.7627 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.6084 2.0283 -0.5139 34 1 3.1499 1.1384 -0.5138 35 1 3.0323 4.6106 0.5141 36 1 3.4442 3.1303 -0.3921 37 1 5.6267 3.0085 0.7773 38 1 5.4535 4.5865 -0.0320 39 1 6.2871 4.9232 2.2512 40 1 4.6330 5.5592 2.1195 41 1 1.5255 4.2487 3.7278 42 1 2.4912 5.2185 2.5686 43 1 2.8968 4.8149 5.5273 44 1 3.3579 6.2038 4.5040 45 1 4.1786 6.7456 7.4358 46 1 0.4473 -2.4735 -0.5544 47 1 2.0547 -2.9524 2.0960 48 1 0.5710 -3.8976 1.5415 49 1 1.8099 -4.6128 -0.5537 50 1 3.2935 -3.6676 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569909476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:48 Heat of formation + Delta-G solvation = -23.103050 kcal Electronic energy + Delta-G solvation = -30465.790629 eV Core-core repulsion = 26494.168167 eV Total energy + Delta-G solvation = -3971.622463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.88545 -41.00147 -39.42531 -37.19598 -36.80630 -36.43748 -34.23273 -33.74283 -31.30101 -30.25504 -29.45131 -27.56625 -26.47903 -25.86928 -24.60482 -23.35566 -23.28972 -22.04738 -21.58365 -19.98038 -19.50669 -18.81437 -18.66330 -18.43691 -17.46919 -16.85563 -16.75161 -16.41038 -16.16894 -15.97016 -15.51469 -15.27448 -15.09137 -14.83988 -14.74878 -14.34447 -14.10237 -13.83810 -13.79131 -13.57632 -13.56087 -13.25886 -13.11523 -12.90620 -12.82383 -12.64185 -12.46316 -12.38352 -12.30311 -12.09047 -11.95768 -11.68834 -11.56107 -11.53987 -11.44822 -11.22003 -11.07690 -10.94623 -10.74335 -9.72855 -9.63316 -8.92518 -7.87429 -5.23335 1.32401 1.42432 1.44637 1.53144 1.55441 1.76534 2.14209 2.47282 2.91877 3.29723 3.44222 3.50286 3.54935 3.83692 3.85170 3.91205 3.95756 4.02500 4.09267 4.10619 4.12629 4.20338 4.28000 4.32177 4.35789 4.55382 4.58275 4.62990 4.71664 4.74788 4.78353 4.82398 4.86995 4.94738 4.95631 5.00860 5.05214 5.15616 5.20111 5.33076 5.34602 5.37995 5.53136 5.61150 5.62336 5.70667 6.15130 6.26723 6.40978 7.05331 7.06472 7.15580 7.71634 8.37220 9.22531 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.002812 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.357762 B = 9955.233848 C =10344.535371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.599 5.599 3 C 0.102 3.898 4 C 0.488 3.512 5 O -0.584 6.584 6 N -0.590 5.590 7 C 0.101 3.899 8 C -0.126 4.126 9 C -0.117 4.117 10 C 0.149 3.851 11 H 0.038 0.962 12 C 0.148 3.852 13 H 0.059 0.941 14 C -0.129 4.129 15 C 0.191 3.809 16 N -0.619 5.619 17 C -0.238 4.238 18 H 0.077 0.923 19 C -0.065 4.065 20 N -0.950 5.950 21 Si 0.978 3.022 22 H -0.282 1.282 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.535 3.465 26 O -0.588 6.588 27 C -0.193 4.193 28 C -0.153 4.153 29 C -0.146 4.146 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.156 0.844 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.008 0.992 44 H 0.014 0.986 45 H 0.247 0.753 46 H 0.162 0.838 47 H 0.067 0.933 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 -12.338 -22.900 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.330 5.330 3 C -0.024 4.024 4 C 0.276 3.724 5 O -0.464 6.464 6 N -0.322 5.322 7 C -0.019 4.019 8 C -0.164 4.164 9 C -0.157 4.157 10 C 0.042 3.958 11 H 0.056 0.944 12 C 0.042 3.958 13 H 0.077 0.923 14 C -0.168 4.168 15 C 0.066 3.934 16 N -0.344 5.344 17 C -0.367 4.367 18 H 0.095 0.905 19 C -0.258 4.258 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.209 1.209 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.325 3.675 26 O -0.468 6.468 27 C -0.213 4.213 28 C -0.190 4.190 29 C -0.184 4.184 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.174 0.826 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.141 0.859 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.026 0.974 44 H 0.033 0.967 45 H 0.057 0.943 46 H 0.179 0.821 47 H 0.085 0.915 48 H 0.153 0.847 49 H 0.154 0.846 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.798 -12.560 -22.225 27.718 hybrid contribution 1.005 0.666 1.859 2.216 sum -9.794 -11.894 -20.366 25.537 Atomic orbital electron populations 1.22091 0.76349 1.04309 1.03800 1.47525 1.08772 1.04297 1.72370 1.21549 1.01345 0.87783 0.91771 1.22033 0.77071 0.79910 0.93391 1.90669 1.52956 1.54738 1.48011 1.47717 1.55430 1.22672 1.06421 1.22250 0.94646 0.96618 0.88426 1.21899 0.96388 1.01132 0.96987 1.21881 1.00670 0.98709 0.94463 1.21561 0.94010 0.92513 0.87719 0.94409 1.21172 0.95201 0.96065 0.83328 0.92261 1.22897 0.98146 0.96699 0.99057 1.20865 0.83596 0.95195 0.93741 1.44982 1.08437 1.55533 1.25477 1.19371 0.90874 1.24384 1.02112 0.90476 1.25623 0.99443 1.00305 1.00385 1.70168 1.22241 1.37362 1.30149 0.85087 0.78299 0.78092 0.77904 1.20878 1.22049 1.19814 1.20421 0.87022 0.86013 0.74032 1.90668 1.16197 1.88014 1.51924 1.22312 1.03601 0.88843 1.06556 1.22979 1.04036 1.01376 0.90625 1.23030 0.98758 0.96033 1.00545 0.88752 0.90033 0.91012 0.82611 0.86569 0.89040 0.85877 0.92367 0.87469 0.93651 0.92428 0.91487 0.89370 0.97373 0.96731 0.94348 0.82053 0.91467 0.84674 0.84610 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.01 127.77 1.28 2.16 16 2 N -0.60 -12.10 2.36 -851.14 -2.01 -14.11 16 3 C 0.10 1.97 4.20 85.63 0.36 2.33 16 4 C 0.49 14.70 7.73 87.66 0.68 15.38 16 5 O -0.58 -23.49 15.78 -3.03 -0.05 -23.54 16 6 N -0.59 -17.30 2.74 -794.04 -2.17 -19.47 16 7 C 0.10 1.95 6.05 86.48 0.52 2.48 16 8 C -0.13 -2.90 6.11 30.66 0.19 -2.72 16 9 C -0.12 -4.05 5.10 30.51 0.16 -3.90 16 10 C 0.15 6.43 3.60 45.08 0.16 6.59 16 11 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 12 C 0.15 5.82 3.08 46.13 0.14 5.96 16 13 H 0.06 2.81 7.01 -2.38 -0.02 2.79 16 14 C -0.13 -4.99 6.07 31.61 0.19 -4.80 16 15 C 0.19 9.81 5.19 86.79 0.45 10.26 16 16 N -0.62 -32.94 2.91 -666.93 -1.94 -34.88 16 17 C -0.24 -13.85 10.29 84.04 0.86 -12.99 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.06 -3.79 5.49 84.86 0.47 -3.32 16 20 N -0.95 -58.56 10.33 21.65 0.22 -58.34 16 21 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 25 C 0.53 13.50 7.46 87.66 0.65 14.16 16 26 O -0.59 -20.20 15.84 -3.04 -0.05 -20.25 16 27 C -0.19 -3.25 4.80 -11.54 -0.06 -3.31 16 28 C -0.15 -2.66 10.24 30.61 0.31 -2.34 16 29 C -0.15 -2.39 10.05 30.61 0.31 -2.08 16 30 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.08 0.88 6.64 -2.39 -0.02 0.86 16 32 H 0.07 0.89 8.07 -2.39 -0.02 0.87 16 33 H 0.16 1.47 7.86 -2.39 -0.02 1.45 16 34 H 0.12 2.26 6.89 -2.39 -0.02 2.24 16 35 H 0.09 1.51 7.53 -2.39 -0.02 1.49 16 36 H 0.12 1.37 5.82 -2.39 -0.01 1.35 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 2.06 7.12 -2.39 -0.02 2.04 16 41 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 42 H 0.09 2.91 6.82 -2.39 -0.02 2.90 16 43 H 0.01 0.47 7.30 -2.39 -0.02 0.45 16 44 H 0.01 0.81 7.60 -2.39 -0.02 0.79 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 46 H 0.16 1.43 7.26 -2.38 -0.02 1.42 16 47 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.14 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.08 1.77 7.67 -2.38 -0.02 1.75 16 Total: -1.00 -86.48 389.30 3.63 -82.84 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.93 Total: 14.54 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.68 Total: 23.87 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -5.90 Total: -126.80 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.10 Total: -43.78 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -86.48 3.63 -82.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569909476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.738 kcal (2) G-P(sol) polarization free energy of solvation -86.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds