Wall clock time and date at job start Tue Mar 31 2020 18:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00000 * 2 1 4 4 C 1.50701 * 109.47303 * 66.04525 * 3 2 1 5 5 O 1.21295 * 120.00096 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99906 * 180.02562 * 4 3 2 7 7 C 1.37096 * 119.99683 * 180.02562 * 6 4 3 8 8 H 1.08004 * 120.00503 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99922 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00126 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99873 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47248 * 60.00086 * 11 9 7 13 13 H 1.48504 * 109.47149 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47283 * 299.99532 * 11 9 7 15 15 C 1.46898 * 110.99959 * 236.04540 * 2 1 3 16 16 C 1.53044 * 109.46072 * 303.95328 * 15 2 1 17 17 C 1.53191 * 109.31440 * 178.61380 * 16 15 2 18 18 N 1.46926 * 108.89109 * 54.56430 * 17 16 15 19 19 C 1.34780 * 120.62730 * 126.46248 * 18 17 16 20 20 O 1.21276 * 120.00248 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99585 * 180.02562 * 19 18 17 22 22 H 1.09002 * 115.55592 * 325.71987 * 21 19 18 23 23 C 1.53003 * 117.49674 * 111.39187 * 21 19 18 24 24 C 1.53000 * 59.99974 * 107.48804 * 23 21 19 25 25 C 1.52986 * 138.58800 * 130.88992 * 24 23 21 26 26 C 1.52987 * 138.58750 * 229.10739 * 24 23 21 27 27 C 1.46957 * 118.71783 * 306.64359 * 18 17 16 28 28 C 1.53040 * 109.45864 * 183.88731 * 15 2 1 29 29 H 1.08999 * 109.47746 * 183.95483 * 1 2 3 30 30 H 1.09001 * 109.47842 * 303.95575 * 1 2 3 31 31 H 1.09003 * 109.47503 * 63.95460 * 1 2 3 32 32 H 1.08999 * 109.47316 * 186.04472 * 3 2 1 33 33 H 1.09001 * 109.47185 * 306.04169 * 3 2 1 34 34 H 0.96996 * 120.00418 * 359.97438 * 6 4 3 35 35 H 0.96997 * 120.00138 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.46143 * 63.92743 * 15 2 1 37 37 H 1.09003 * 109.49852 * 58.66645 * 16 15 2 38 38 H 1.08997 * 109.49691 * 298.57078 * 16 15 2 39 39 H 1.09002 * 109.58786 * 174.42474 * 17 16 15 40 40 H 1.08996 * 109.58870 * 294.70753 * 17 16 15 41 41 H 1.09003 * 117.49827 * 214.97237 * 23 21 19 42 42 H 1.08995 * 117.50147 * 359.97438 * 23 21 19 43 43 H 1.08997 * 117.49828 * 238.38163 * 25 24 23 44 44 H 1.09000 * 117.50193 * 23.41104 * 25 24 23 45 45 H 1.09002 * 117.50232 * 336.59875 * 26 24 23 46 46 H 1.09007 * 117.49899 * 121.58965 * 26 24 23 47 47 H 1.09001 * 109.46843 * 293.57352 * 27 18 17 48 48 H 1.08997 * 109.71602 * 173.28846 * 27 18 17 49 49 H 1.08995 * 109.49643 * 301.33531 * 28 15 2 50 50 H 1.08996 * 109.49892 * 61.43726 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0045 1.4456 2.1408 6 7 2.0180 3.3202 1.5232 7 6 1.6923 3.9347 2.7047 8 1 1.1299 3.3989 3.4551 9 6 2.0856 5.2471 2.9367 10 7 2.7702 5.8990 2.0239 11 14 1.6412 6.0846 4.5462 12 1 2.2329 5.3273 5.6782 13 1 2.1739 7.4708 4.5465 14 1 0.1639 6.1215 4.6936 15 6 1.9954 -0.7660 -1.1376 16 6 1.4257 -2.1860 -1.1034 17 6 1.9494 -2.9712 -2.3101 18 7 3.4174 -2.9101 -2.3166 19 6 4.1514 -4.0391 -2.3736 20 8 3.6008 -5.1186 -2.4205 21 6 5.6563 -3.9599 -2.3789 22 1 6.0800 -3.0989 -2.8959 23 6 6.3952 -4.4753 -1.1423 24 6 6.4327 -5.2766 -2.4451 25 6 7.4670 -5.9546 -3.3457 26 6 6.2124 -6.7162 -2.9135 27 6 4.0697 -1.5946 -2.2558 28 6 3.5221 -0.8248 -1.0498 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3635 0.5740 0.8524 31 1 -0.3634 0.4512 -0.9233 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9273 -0.8310 34 1 2.5233 3.8014 0.8495 35 1 3.0451 6.8149 2.1860 36 1 1.7039 -0.2801 -2.0686 37 1 0.3372 -2.1424 -1.1424 38 1 1.7377 -2.6812 -0.1839 39 1 1.6272 -4.0100 -2.2379 40 1 1.5613 -2.5313 -3.2287 41 1 7.3053 -3.9536 -0.8459 42 1 5.7929 -4.8713 -0.3247 43 1 7.5235 -5.6257 -4.3834 44 1 8.4143 -6.2470 -2.8927 45 1 6.3342 -7.5097 -2.1761 46 1 5.4432 -6.8884 -3.6664 47 1 3.8565 -1.0408 -3.1701 48 1 5.1468 -1.7229 -2.1491 49 1 3.9258 0.1876 -1.0506 50 1 3.8144 -1.3328 -0.1308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571334071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:30 Heat of formation + Delta-G solvation = 6.367099 kcal Electronic energy + Delta-G solvation = -29080.516796 eV Core-core repulsion = 25110.172255 eV Total energy + Delta-G solvation = -3970.344541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64097 -39.15231 -38.13478 -37.29858 -35.64218 -33.87968 -33.08494 -31.58186 -31.37720 -31.19820 -27.99758 -26.15264 -25.13688 -24.10774 -22.97526 -22.68475 -22.36820 -20.64681 -19.70921 -19.12614 -18.63796 -17.84174 -17.64106 -16.27439 -16.05592 -15.66709 -15.30101 -15.20548 -15.00935 -14.80014 -14.60464 -14.39564 -14.22227 -13.88601 -13.62535 -13.41330 -13.15838 -12.78961 -12.71426 -12.44636 -12.22556 -11.97625 -11.87986 -11.77118 -11.50808 -11.44843 -11.30609 -11.17019 -10.88575 -10.76074 -10.52303 -10.44823 -10.42140 -10.34233 -10.26602 -10.20888 -9.82282 -9.47075 -8.86034 -8.43887 -7.98084 -7.84271 -6.42217 -3.82883 2.27263 2.65660 3.19476 3.25157 3.29503 3.40297 3.45177 3.89327 3.92856 3.95732 4.22232 4.27325 4.45758 4.55691 4.64467 4.76195 4.88082 5.01374 5.08044 5.12624 5.14109 5.19795 5.24582 5.31165 5.31972 5.33850 5.36805 5.39591 5.45535 5.57867 5.61885 5.63870 5.69442 5.69992 5.75835 5.87428 5.88964 5.94606 5.98377 6.07708 6.24133 6.30117 6.34305 6.57143 7.18644 7.28286 7.41223 7.54621 7.99951 8.06033 8.61731 9.17891 9.54217 10.06419 10.75477 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.002111 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.377780 B =13262.671863 C =14072.014149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.514 5.514 3 C 0.042 3.958 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.565 5.565 7 C -0.298 4.298 8 H 0.102 0.898 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 0.930 3.070 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.086 3.914 16 C -0.128 4.128 17 C 0.114 3.886 18 N -0.608 5.608 19 C 0.545 3.455 20 O -0.538 6.538 21 C -0.143 4.143 22 H 0.125 0.875 23 C -0.098 4.098 24 C -0.203 4.203 25 C -0.130 4.130 26 C -0.114 4.114 27 C 0.109 3.891 28 C -0.132 4.132 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.013 0.987 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.391 0.609 35 H 0.272 0.728 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.618 -17.294 -14.081 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.238 5.238 3 C -0.089 4.089 4 C 0.230 3.770 5 O -0.461 6.461 6 N -0.202 5.202 7 C -0.428 4.428 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.023 4.023 16 C -0.166 4.166 17 C -0.008 4.008 18 N -0.341 5.341 19 C 0.333 3.667 20 O -0.415 6.415 21 C -0.164 4.164 22 H 0.143 0.857 23 C -0.135 4.135 24 C -0.203 4.203 25 C -0.167 4.167 26 C -0.150 4.150 27 C -0.014 4.014 28 C -0.171 4.171 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.031 0.969 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.104 -18.291 -13.100 23.593 hybrid contribution -0.160 1.578 -0.420 1.641 sum 6.944 -16.712 -13.520 22.590 Atomic orbital electron populations 1.22574 0.86765 1.02058 1.01359 1.61605 1.08551 1.12565 1.41031 1.21933 1.00919 0.88991 0.97083 1.19745 0.85437 0.82900 0.88963 1.90486 1.43826 1.64654 1.47139 1.41859 1.49521 1.10760 1.18020 1.19643 1.32975 0.95440 0.94748 0.87995 1.25252 0.96846 0.96650 0.99210 1.69599 1.38059 1.12292 1.34452 0.85926 0.78895 0.77916 0.81526 1.19897 1.21004 1.19944 1.21596 0.94501 0.93994 0.92205 1.22028 1.00894 0.94866 0.98816 1.21613 0.78885 1.02280 0.98057 1.48077 1.06824 1.06175 1.73021 1.19676 0.87947 0.83483 0.75589 1.90674 1.72997 1.27924 1.49909 1.21996 0.91133 0.97985 1.05269 0.85725 1.22674 1.01058 0.99811 0.89947 1.21171 1.04871 0.93189 1.01081 1.22762 0.93695 1.01586 0.98620 1.22588 0.98715 0.91424 1.02299 1.21824 0.97879 0.82959 0.98786 1.22069 0.95219 1.01106 0.98679 0.91862 0.88594 0.96875 0.89147 0.93630 0.77543 0.91852 0.94401 0.90275 0.90411 0.88854 0.91643 0.87400 0.87964 0.88580 0.88294 0.88535 0.88278 0.91282 0.89251 0.90021 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.75 60.06 0.53 0.85 16 2 N -0.51 -8.26 4.37 -236.29 -1.03 -9.29 16 3 C 0.04 0.72 5.26 -4.98 -0.03 0.70 16 4 C 0.44 10.29 7.48 -10.98 -0.08 10.21 16 5 O -0.58 -15.34 13.91 5.54 0.08 -15.26 16 6 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 11 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 C 0.09 1.04 1.91 -67.67 -0.13 0.91 16 16 C -0.13 -1.44 5.04 -26.61 -0.13 -1.57 16 17 C 0.11 1.19 6.43 -3.71 -0.02 1.16 16 18 N -0.61 -6.33 2.98 -172.74 -0.51 -6.85 16 19 C 0.54 6.43 7.48 -10.98 -0.08 6.35 16 20 O -0.54 -8.11 15.66 5.56 0.09 -8.02 16 21 C -0.14 -1.31 4.96 -91.77 -0.46 -1.77 16 22 H 0.13 0.88 6.82 -51.93 -0.35 0.53 16 23 C -0.10 -0.82 10.23 -26.73 -0.27 -1.10 16 24 C -0.20 -1.85 5.05 -154.52 -0.78 -2.63 16 25 C -0.13 -0.92 10.53 -26.74 -0.28 -1.20 16 26 C -0.11 -1.00 10.16 -26.74 -0.27 -1.27 16 27 C 0.11 0.92 6.29 -3.69 -0.02 0.90 16 28 C -0.13 -1.41 5.19 -26.61 -0.14 -1.55 16 29 H 0.06 0.88 6.20 -51.93 -0.32 0.56 16 30 H 0.10 1.88 5.82 -51.93 -0.30 1.58 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 1.39 5.80 -51.93 -0.30 1.09 16 33 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.85 6.27 -51.93 -0.33 0.52 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.07 7.01 -51.93 -0.36 0.71 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.60 5.69 -51.93 -0.30 0.31 16 49 H 0.08 0.84 6.13 -51.93 -0.32 0.52 16 50 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -32.85 395.01 -10.12 -42.97 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -7.91 Total: 10.19 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.42 Total: 2.10 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.88 Total: -53.82 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.16 Total: -23.28 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.85 -10.12 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571334071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.336 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds