Wall clock time and date at job start Tue Mar 31 2020 18:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46894 * 111.00000 * 2 1 4 4 C 1.50701 * 109.47303 * 66.04525 * 3 2 1 5 5 O 1.21295 * 120.00096 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99906 * 180.02562 * 4 3 2 7 7 C 1.37096 * 119.99683 * 180.02562 * 6 4 3 8 8 H 1.08004 * 120.00503 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99922 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00126 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99873 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47248 * 60.00086 * 11 9 7 13 13 H 1.48504 * 109.47149 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47283 * 299.99532 * 11 9 7 15 15 C 1.46898 * 110.99959 * 236.04540 * 2 1 3 16 16 C 1.53044 * 109.46072 * 303.95328 * 15 2 1 17 17 C 1.53191 * 109.31440 * 178.61380 * 16 15 2 18 18 N 1.46926 * 108.89109 * 54.56430 * 17 16 15 19 19 C 1.34780 * 120.62730 * 126.46248 * 18 17 16 20 20 O 1.21276 * 120.00248 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99585 * 180.02562 * 19 18 17 22 22 H 1.09002 * 115.55592 * 325.71987 * 21 19 18 23 23 C 1.53003 * 117.49674 * 111.39187 * 21 19 18 24 24 C 1.53000 * 59.99974 * 107.48804 * 23 21 19 25 25 C 1.52986 * 138.58800 * 130.88992 * 24 23 21 26 26 C 1.52987 * 138.58750 * 229.10739 * 24 23 21 27 27 C 1.46957 * 118.71783 * 306.64359 * 18 17 16 28 28 C 1.53040 * 109.45864 * 183.88731 * 15 2 1 29 29 H 1.08999 * 109.47746 * 183.95483 * 1 2 3 30 30 H 1.09001 * 109.47842 * 303.95575 * 1 2 3 31 31 H 1.09003 * 109.47503 * 63.95460 * 1 2 3 32 32 H 1.08999 * 109.47316 * 186.04472 * 3 2 1 33 33 H 1.09001 * 109.47185 * 306.04169 * 3 2 1 34 34 H 0.96996 * 120.00418 * 359.97438 * 6 4 3 35 35 H 0.96997 * 120.00138 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.46143 * 63.92743 * 15 2 1 37 37 H 1.09003 * 109.49852 * 58.66645 * 16 15 2 38 38 H 1.08997 * 109.49691 * 298.57078 * 16 15 2 39 39 H 1.09002 * 109.58786 * 174.42474 * 17 16 15 40 40 H 1.08996 * 109.58870 * 294.70753 * 17 16 15 41 41 H 1.09003 * 117.49827 * 214.97237 * 23 21 19 42 42 H 1.08995 * 117.50147 * 359.97438 * 23 21 19 43 43 H 1.08997 * 117.49828 * 238.38163 * 25 24 23 44 44 H 1.09000 * 117.50193 * 23.41104 * 25 24 23 45 45 H 1.09002 * 117.50232 * 336.59875 * 26 24 23 46 46 H 1.09007 * 117.49899 * 121.58965 * 26 24 23 47 47 H 1.09001 * 109.46843 * 293.57352 * 27 18 17 48 48 H 1.08997 * 109.71602 * 173.28846 * 27 18 17 49 49 H 1.08995 * 109.49643 * 301.33531 * 28 15 2 50 50 H 1.08996 * 109.49892 * 61.43726 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0045 1.4456 2.1408 6 7 2.0180 3.3202 1.5232 7 6 1.6923 3.9347 2.7047 8 1 1.1299 3.3989 3.4551 9 6 2.0856 5.2471 2.9367 10 7 2.7702 5.8990 2.0239 11 14 1.6412 6.0846 4.5462 12 1 2.2329 5.3273 5.6782 13 1 2.1739 7.4708 4.5465 14 1 0.1639 6.1215 4.6936 15 6 1.9954 -0.7660 -1.1376 16 6 1.4257 -2.1860 -1.1034 17 6 1.9494 -2.9712 -2.3101 18 7 3.4174 -2.9101 -2.3166 19 6 4.1514 -4.0391 -2.3736 20 8 3.6008 -5.1186 -2.4205 21 6 5.6563 -3.9599 -2.3789 22 1 6.0800 -3.0989 -2.8959 23 6 6.3952 -4.4753 -1.1423 24 6 6.4327 -5.2766 -2.4451 25 6 7.4670 -5.9546 -3.3457 26 6 6.2124 -6.7162 -2.9135 27 6 4.0697 -1.5946 -2.2558 28 6 3.5221 -0.8248 -1.0498 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3635 0.5740 0.8524 31 1 -0.3634 0.4512 -0.9233 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9273 -0.8310 34 1 2.5233 3.8014 0.8495 35 1 3.0451 6.8149 2.1860 36 1 1.7039 -0.2801 -2.0686 37 1 0.3372 -2.1424 -1.1424 38 1 1.7377 -2.6812 -0.1839 39 1 1.6272 -4.0100 -2.2379 40 1 1.5613 -2.5313 -3.2287 41 1 7.3053 -3.9536 -0.8459 42 1 5.7929 -4.8713 -0.3247 43 1 7.5235 -5.6257 -4.3834 44 1 8.4143 -6.2470 -2.8927 45 1 6.3342 -7.5097 -2.1761 46 1 5.4432 -6.8884 -3.6664 47 1 3.8565 -1.0408 -3.1701 48 1 5.1468 -1.7229 -2.1491 49 1 3.9258 0.1876 -1.0506 50 1 3.8144 -1.3328 -0.1308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571334071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:29 Heat of formation + Delta-G solvation = -15.224945 kcal Electronic energy + Delta-G solvation = -29081.453097 eV Core-core repulsion = 25110.172255 eV Total energy + Delta-G solvation = -3971.280843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50620 -40.48319 -39.36708 -38.27424 -36.80542 -35.81777 -33.80117 -33.26516 -32.48476 -32.24611 -29.43767 -27.25547 -26.64584 -25.29156 -23.87600 -23.39140 -23.27836 -21.56898 -20.88919 -20.50317 -19.82297 -19.41248 -18.51685 -17.74980 -16.94044 -16.82973 -16.57336 -16.22006 -16.06282 -15.88281 -15.79048 -15.52586 -15.43269 -15.22818 -15.06589 -14.62487 -14.16321 -13.85863 -13.73275 -13.56294 -13.47781 -13.31828 -13.09254 -12.86760 -12.66637 -12.51071 -12.42914 -12.35835 -12.30752 -12.18810 -12.11894 -11.69974 -11.43649 -11.33886 -11.17351 -11.03029 -10.92700 -10.66846 -10.24569 -9.97598 -9.70679 -9.15631 -8.44552 -5.92624 1.40317 1.42241 1.43170 1.52680 1.88461 2.08619 2.29427 2.71524 2.75446 2.82680 3.22239 3.32113 3.42122 3.54196 3.73809 3.82381 3.84960 4.03346 4.06648 4.13341 4.26492 4.30648 4.40361 4.44373 4.49348 4.52910 4.56218 4.59333 4.64499 4.70940 4.74738 4.75576 4.78452 4.80324 4.81279 4.84089 4.98514 5.02025 5.03966 5.14174 5.22747 5.27399 5.37316 5.43127 5.51777 5.91629 6.10261 6.27227 6.37182 6.63835 7.13975 7.15806 7.59821 8.16399 8.72505 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.002111 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.377780 B =13262.671863 C =14072.014149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.535 5.535 3 C 0.056 3.944 4 C 0.441 3.559 5 O -0.616 6.616 6 N -0.574 5.574 7 C -0.331 4.331 8 H 0.077 0.923 9 C -0.013 4.013 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.273 1.273 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.087 3.913 16 C -0.119 4.119 17 C 0.118 3.882 18 N -0.607 5.607 19 C 0.537 3.463 20 O -0.581 6.581 21 C -0.145 4.145 22 H 0.152 0.848 23 C -0.093 4.093 24 C -0.226 4.226 25 C -0.105 4.105 26 C -0.133 4.133 27 C 0.112 3.888 28 C -0.130 4.130 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.115 0.885 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.133 0.867 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.111 0.889 49 H 0.091 0.909 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.324 -16.519 -15.718 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.259 5.259 3 C -0.075 4.075 4 C 0.228 3.772 5 O -0.502 6.502 6 N -0.212 5.212 7 C -0.461 4.461 8 H 0.095 0.905 9 C -0.212 4.212 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.199 1.199 15 C -0.020 4.020 16 C -0.158 4.158 17 C -0.005 4.005 18 N -0.339 5.339 19 C 0.326 3.674 20 O -0.461 6.461 21 C -0.165 4.165 22 H 0.170 0.830 23 C -0.130 4.130 24 C -0.226 4.226 25 C -0.141 4.141 26 C -0.170 4.170 27 C -0.011 4.011 28 C -0.168 4.168 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.151 0.849 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.116 0.884 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.129 0.871 49 H 0.109 0.891 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.826 -17.495 -14.763 24.534 hybrid contribution -0.746 1.258 0.087 1.465 sum 8.079 -16.237 -14.676 23.330 Atomic orbital electron populations 1.22432 0.87097 1.02423 1.00301 1.61552 1.08568 1.12115 1.43682 1.21796 1.02518 0.89419 0.93779 1.20836 0.83648 0.82184 0.90513 1.90468 1.45146 1.65425 1.49183 1.41917 1.50158 1.11566 1.17563 1.19587 1.34402 0.96381 0.95745 0.90511 1.25988 0.96361 0.96634 1.02257 1.69654 1.38078 1.12663 1.35632 0.85031 0.78549 0.77342 0.77670 1.19841 1.19480 1.19862 1.21696 0.95467 0.93530 0.91336 1.21932 1.01238 0.94411 0.98190 1.21557 0.79262 1.01336 0.98349 1.48197 1.06805 1.06778 1.72127 1.20220 0.89222 0.83114 0.74797 1.90653 1.74002 1.29519 1.51954 1.22073 0.89254 0.99084 1.06116 0.83028 1.22722 1.01507 0.99594 0.89154 1.21428 1.06087 0.93142 1.01985 1.22853 0.93330 0.99106 0.98836 1.22595 0.99970 0.91875 1.02532 1.21980 0.98865 0.81622 0.98589 1.22048 0.94064 1.01755 0.98933 0.90359 0.92801 0.95096 0.86695 0.91579 0.76992 0.91341 0.92555 0.89732 0.92780 0.90431 0.89595 0.84931 0.89694 0.87531 0.86550 0.88400 0.89859 0.88997 0.87080 0.89093 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 8.75 127.69 1.12 1.91 16 2 N -0.53 -16.56 4.37 -901.48 -3.94 -20.50 16 3 C 0.06 1.84 5.26 85.56 0.45 2.29 16 4 C 0.44 20.61 7.48 87.66 0.66 21.27 16 5 O -0.62 -33.81 13.91 -3.08 -0.04 -33.85 16 6 N -0.57 -28.98 5.29 -306.97 -1.62 -30.60 16 7 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 10 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 11 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.09 1.93 1.91 44.94 0.09 2.01 16 16 C -0.12 -2.56 5.04 30.67 0.15 -2.40 16 17 C 0.12 2.29 6.43 86.36 0.56 2.85 16 18 N -0.61 -11.54 2.98 -818.82 -2.44 -13.98 16 19 C 0.54 12.21 7.48 87.66 0.66 12.87 16 20 O -0.58 -17.86 15.66 -3.02 -0.05 -17.91 16 21 C -0.14 -2.37 4.96 -11.54 -0.06 -2.43 16 22 H 0.15 1.59 6.82 -2.39 -0.02 1.57 16 23 C -0.09 -1.41 10.23 30.60 0.31 -1.10 16 24 C -0.23 -3.82 5.05 -52.19 -0.26 -4.08 16 25 C -0.10 -1.26 10.53 30.59 0.32 -0.94 16 26 C -0.13 -2.31 10.16 30.59 0.31 -2.00 16 27 C 0.11 1.50 6.29 86.36 0.54 2.05 16 28 C -0.13 -2.42 5.19 30.67 0.16 -2.26 16 29 H 0.08 2.16 6.20 -2.39 -0.01 2.14 16 30 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 31 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.12 3.23 5.80 -2.39 -0.01 3.22 16 33 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 34 H 0.40 18.83 7.90 -92.71 -0.73 18.09 16 35 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.70 6.27 -2.39 -0.01 1.69 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.08 1.79 7.01 -2.39 -0.02 1.77 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.11 1.05 5.69 -2.39 -0.01 1.04 16 49 H 0.09 1.55 6.13 -2.39 -0.01 1.53 16 50 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -73.87 395.01 0.73 -73.14 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.23 Total: 35.59 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.28 Total: 11.98 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -7.72 Total: -113.68 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.09 Total: -51.76 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.87 0.73 -73.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571334071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.914 kcal (2) G-P(sol) polarization free energy of solvation -73.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds