Wall clock time and date at job start Tue Mar 31 2020 18:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99760 * 2 1 4 4 C 1.50693 * 109.47259 * 293.94974 * 3 2 1 5 5 O 1.21295 * 119.99739 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00388 * 180.02562 * 4 3 2 7 7 C 1.37090 * 120.00312 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00141 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99958 * 180.02562 * 7 6 4 10 10 N 1.31411 * 120.00025 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99740 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47111 * 90.00256 * 11 9 7 13 13 H 1.48503 * 109.47039 * 209.99695 * 11 9 7 14 14 H 1.48492 * 109.47539 * 330.00034 * 11 9 7 15 15 C 1.46901 * 110.99766 * 123.94868 * 2 1 3 16 16 C 1.53046 * 109.45625 * 66.04840 * 15 2 1 17 17 C 1.53193 * 109.31176 * 178.61468 * 16 15 2 18 18 N 1.46929 * 108.77565 * 54.63167 * 17 16 15 19 19 C 1.34782 * 120.62659 * 126.37070 * 18 17 16 20 20 O 1.21279 * 120.00158 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.99799 * 179.97438 * 19 18 17 22 22 H 1.09008 * 115.54954 * 34.32883 * 21 19 18 23 23 C 1.52999 * 117.51904 * 248.62745 * 21 19 18 24 24 C 1.52988 * 117.50088 * 179.97438 * 21 19 18 25 25 C 1.52995 * 138.58963 * 336.62747 * 24 21 19 26 26 C 1.52996 * 138.59334 * 238.41035 * 24 21 19 27 27 C 1.46923 * 118.74010 * 306.64768 * 18 17 16 28 28 C 1.52755 * 109.00987 * 53.30734 * 27 18 17 29 29 H 1.09001 * 109.47552 * 296.05453 * 1 2 3 30 30 H 1.09009 * 109.47026 * 56.04643 * 1 2 3 31 31 H 1.09001 * 109.47715 * 176.04578 * 1 2 3 32 32 H 1.09002 * 109.47567 * 53.95596 * 3 2 1 33 33 H 1.09006 * 109.46711 * 173.95351 * 3 2 1 34 34 H 0.96998 * 119.99288 * 0.02562 * 6 4 3 35 35 H 0.97003 * 119.99638 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.45926 * 186.02102 * 15 2 1 37 37 H 1.08995 * 109.49673 * 58.66228 * 16 15 2 38 38 H 1.09000 * 109.49508 * 298.56132 * 16 15 2 39 39 H 1.08996 * 109.58347 * 294.85137 * 17 16 15 40 40 H 1.08994 * 109.70802 * 174.48942 * 17 16 15 41 41 H 1.09005 * 117.49472 * 145.02966 * 23 21 19 42 42 H 1.08994 * 117.50155 * 0.02562 * 23 21 19 43 43 H 1.09002 * 117.49797 * 336.59223 * 25 24 21 44 44 H 1.09002 * 117.50149 * 121.60945 * 25 24 21 45 45 H 1.08999 * 117.49658 * 238.38145 * 26 24 21 46 46 H 1.08997 * 117.49650 * 23.40097 * 26 24 21 47 47 H 1.09005 * 109.58763 * 173.14778 * 27 18 17 48 48 H 1.09002 * 109.58358 * 293.56509 * 27 18 17 49 49 H 1.09007 * 109.56664 * 185.55328 * 28 27 18 50 50 H 1.08993 * 109.36188 * 65.50121 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0047 1.4455 -2.1408 6 7 2.0189 3.3199 -1.5238 7 6 1.6932 3.9344 -2.7052 8 1 1.1310 3.3984 -3.4556 9 6 2.0874 5.2463 -2.9376 10 7 2.7720 5.8983 -2.0248 11 14 1.6443 6.0833 -4.5478 12 1 0.3324 6.7647 -4.4068 13 1 2.6874 7.0837 -4.8891 14 1 1.5609 5.0672 -5.6274 15 6 1.9954 -0.7659 1.1377 16 6 1.6311 -2.2429 0.9701 17 6 2.2111 -3.0436 2.1403 18 7 1.7453 -2.4462 3.3992 19 6 1.1286 -3.2006 4.3304 20 8 0.9533 -4.3844 4.1330 21 6 0.6570 -2.5733 5.6169 22 1 0.3020 -1.5458 5.5364 23 6 1.3808 -2.9718 6.9046 24 6 -0.0363 -3.4823 6.6335 25 6 -0.8025 -4.8064 6.6538 26 6 -1.3800 -3.5775 7.3588 27 6 1.9588 -1.0096 3.6210 28 6 1.3866 -0.2328 2.4367 29 1 -0.3634 0.4514 0.9232 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 1.5611 1.9274 0.8309 33 1 3.0797 1.3444 0.1083 34 1 2.5248 3.8008 -0.8502 35 1 3.0468 6.8143 -2.1870 36 1 3.0796 -0.6613 1.1753 37 1 2.0453 -2.6157 0.0334 38 1 0.5465 -2.3509 0.9576 39 1 3.2999 -3.0109 2.1013 40 1 1.8743 -4.0785 2.0803 41 1 1.5018 -2.2065 7.6713 42 1 2.1985 -3.6876 6.8215 43 1 -1.2799 -5.1259 5.7274 44 1 -0.4079 -5.6068 7.2798 45 1 -1.3653 -3.5693 8.4487 46 1 -2.2373 -3.0884 6.8963 47 1 1.4535 -0.7021 4.5365 48 1 3.0267 -0.8077 3.7052 49 1 1.6267 0.8251 2.5436 50 1 0.3044 -0.3598 2.4102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571334072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:33 Heat of formation + Delta-G solvation = 5.712418 kcal Electronic energy + Delta-G solvation = -29081.950491 eV Core-core repulsion = 25111.577561 eV Total energy + Delta-G solvation = -3970.372931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.71623 -39.26556 -38.15301 -37.36722 -35.62534 -33.88586 -33.13535 -31.59819 -31.23735 -31.09189 -27.92875 -26.27706 -25.09313 -24.15944 -23.50865 -22.71456 -22.35418 -20.58424 -19.60223 -19.11509 -18.64321 -17.83818 -17.58797 -16.35023 -16.09916 -15.66165 -15.32637 -15.22330 -15.03700 -14.68243 -14.64764 -14.53086 -14.08869 -13.91709 -13.83989 -13.54610 -13.19936 -12.73333 -12.68009 -12.38626 -12.25722 -12.06811 -11.85262 -11.76429 -11.55502 -11.42337 -11.25186 -11.19181 -10.96284 -10.83728 -10.56932 -10.46574 -10.44160 -10.39691 -10.33028 -10.22131 -9.87016 -9.48108 -8.88913 -8.44504 -7.97853 -7.81062 -6.42532 -3.83107 2.23102 2.64271 3.16990 3.25782 3.31766 3.35046 3.40659 3.89391 3.90112 3.95266 4.21495 4.24480 4.41026 4.49079 4.66054 4.73897 4.81221 4.99226 5.05374 5.08640 5.10770 5.16850 5.22866 5.27128 5.27768 5.29364 5.32731 5.39664 5.45888 5.53004 5.55517 5.61278 5.66637 5.73261 5.74852 5.84438 5.85384 5.89189 5.97955 6.07922 6.16736 6.28248 6.35556 6.57880 7.15328 7.28681 7.40027 7.54639 7.96943 8.06008 8.61454 9.17782 9.54012 10.06119 10.75226 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.001973 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.816471 B =14185.968765 C =14482.002780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.510 5.510 3 C 0.045 3.955 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.565 5.565 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.085 3.915 16 C -0.124 4.124 17 C 0.113 3.887 18 N -0.607 5.607 19 C 0.544 3.456 20 O -0.537 6.537 21 C -0.143 4.143 22 H 0.125 0.875 23 C -0.099 4.099 24 C -0.203 4.203 25 C -0.113 4.113 26 C -0.130 4.130 27 C 0.112 3.888 28 C -0.174 4.174 29 H 0.017 0.983 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 -14.760 20.383 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.232 5.232 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.202 5.202 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.024 4.024 16 C -0.162 4.162 17 C -0.009 4.009 18 N -0.341 5.341 19 C 0.332 3.668 20 O -0.414 6.414 21 C -0.164 4.164 22 H 0.143 0.857 23 C -0.136 4.136 24 C -0.203 4.203 25 C -0.150 4.150 26 C -0.166 4.166 27 C -0.011 4.011 28 C -0.214 4.214 29 H 0.036 0.964 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.103 0.897 48 H 0.090 0.910 49 H 0.097 0.903 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.814 -15.825 19.220 24.963 hybrid contribution -0.059 1.568 0.312 1.600 sum -1.872 -14.257 19.532 24.254 Atomic orbital electron populations 1.22588 0.87026 1.01943 1.01376 1.61807 1.08697 1.12718 1.39978 1.21871 1.00568 0.89145 0.97026 1.19756 0.85434 0.82912 0.88986 1.90489 1.43851 1.64633 1.47139 1.41867 1.49456 1.10807 1.18046 1.19690 1.32862 0.95455 0.94732 0.87940 1.25256 0.96837 0.96673 0.99235 1.69611 1.38098 1.12214 1.34462 0.85863 0.77993 0.78904 0.81563 1.20460 1.20938 1.19417 1.21759 0.99467 0.93550 0.87625 1.21947 1.01863 0.94168 0.98232 1.21648 0.98778 0.98539 0.81973 1.48090 1.58475 1.09407 1.18108 1.19656 0.76954 0.86233 0.83952 1.90679 1.56284 1.15595 1.78879 1.22014 1.05312 0.99716 0.89386 0.85706 1.22657 0.93190 1.02038 0.95724 1.21172 0.93749 1.02529 1.02866 1.22596 1.00342 0.89975 1.02050 1.22773 0.93395 1.01456 0.99020 1.21652 1.01317 0.79388 0.98757 1.22628 1.02124 1.00455 0.96202 0.96435 0.88740 0.92179 0.93467 0.89505 0.77539 0.91908 0.89952 0.89514 0.91365 0.91299 0.88864 0.87525 0.88093 0.88197 0.88535 0.88287 0.88489 0.89669 0.90973 0.90256 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.42 60.06 0.51 0.80 16 2 N -0.51 -8.09 4.45 -236.27 -1.05 -9.14 16 3 C 0.05 0.77 5.02 -4.98 -0.02 0.75 16 4 C 0.44 10.26 7.48 -10.99 -0.08 10.18 16 5 O -0.58 -15.34 13.91 5.54 0.08 -15.27 16 6 N -0.56 -14.09 5.29 -10.97 -0.06 -14.15 16 7 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 11 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 C 0.09 1.01 2.15 -67.67 -0.15 0.86 16 16 C -0.12 -1.38 5.25 -26.61 -0.14 -1.52 16 17 C 0.11 1.16 6.44 -3.71 -0.02 1.13 16 18 N -0.61 -6.11 2.98 -173.03 -0.52 -6.63 16 19 C 0.54 6.25 7.48 -10.98 -0.08 6.17 16 20 O -0.54 -7.96 15.66 5.56 0.09 -7.87 16 21 C -0.14 -1.27 5.13 -91.78 -0.47 -1.74 16 22 H 0.13 0.91 6.55 -51.92 -0.34 0.57 16 23 C -0.10 -0.73 10.24 -26.71 -0.27 -1.00 16 24 C -0.20 -1.79 5.06 -154.50 -0.78 -2.57 16 25 C -0.11 -0.98 10.16 -26.74 -0.27 -1.25 16 26 C -0.13 -0.92 10.53 -26.73 -0.28 -1.20 16 27 C 0.11 0.91 6.32 -3.94 -0.02 0.88 16 28 C -0.17 -1.72 4.57 -26.84 -0.12 -1.85 16 29 H 0.02 0.25 6.24 -51.93 -0.32 -0.08 16 30 H 0.09 1.86 5.82 -51.92 -0.30 1.56 16 31 H 0.06 0.88 6.50 -51.93 -0.34 0.54 16 32 H 0.05 0.73 7.03 -51.93 -0.36 0.37 16 33 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 34 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 36 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.84 6.62 -51.93 -0.34 0.49 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.55 5.51 -51.93 -0.29 0.27 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.77 6.85 -51.92 -0.36 0.42 16 50 H 0.07 0.80 6.42 -51.93 -0.33 0.47 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -32.78 392.67 -10.12 -42.90 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.81 Total: 10.15 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -2.46 Total: 1.76 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.90 Total: -53.49 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.16 Total: -23.14 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.78 -10.12 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571334072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.611 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds