Wall clock time and date at job start Tue Mar 31 2020 18:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99760 * 2 1 4 4 C 1.50693 * 109.47259 * 293.94974 * 3 2 1 5 5 O 1.21295 * 119.99739 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00388 * 180.02562 * 4 3 2 7 7 C 1.37090 * 120.00312 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00141 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99958 * 180.02562 * 7 6 4 10 10 N 1.31411 * 120.00025 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99740 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47111 * 90.00256 * 11 9 7 13 13 H 1.48503 * 109.47039 * 209.99695 * 11 9 7 14 14 H 1.48492 * 109.47539 * 330.00034 * 11 9 7 15 15 C 1.46901 * 110.99766 * 123.94868 * 2 1 3 16 16 C 1.53046 * 109.45625 * 66.04840 * 15 2 1 17 17 C 1.53193 * 109.31176 * 178.61468 * 16 15 2 18 18 N 1.46929 * 108.77565 * 54.63167 * 17 16 15 19 19 C 1.34782 * 120.62659 * 126.37070 * 18 17 16 20 20 O 1.21279 * 120.00158 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.99799 * 179.97438 * 19 18 17 22 22 H 1.09008 * 115.54954 * 34.32883 * 21 19 18 23 23 C 1.52999 * 117.51904 * 248.62745 * 21 19 18 24 24 C 1.52988 * 117.50088 * 179.97438 * 21 19 18 25 25 C 1.52995 * 138.58963 * 336.62747 * 24 21 19 26 26 C 1.52996 * 138.59334 * 238.41035 * 24 21 19 27 27 C 1.46923 * 118.74010 * 306.64768 * 18 17 16 28 28 C 1.52755 * 109.00987 * 53.30734 * 27 18 17 29 29 H 1.09001 * 109.47552 * 296.05453 * 1 2 3 30 30 H 1.09009 * 109.47026 * 56.04643 * 1 2 3 31 31 H 1.09001 * 109.47715 * 176.04578 * 1 2 3 32 32 H 1.09002 * 109.47567 * 53.95596 * 3 2 1 33 33 H 1.09006 * 109.46711 * 173.95351 * 3 2 1 34 34 H 0.96998 * 119.99288 * 0.02562 * 6 4 3 35 35 H 0.97003 * 119.99638 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.45926 * 186.02102 * 15 2 1 37 37 H 1.08995 * 109.49673 * 58.66228 * 16 15 2 38 38 H 1.09000 * 109.49508 * 298.56132 * 16 15 2 39 39 H 1.08996 * 109.58347 * 294.85137 * 17 16 15 40 40 H 1.08994 * 109.70802 * 174.48942 * 17 16 15 41 41 H 1.09005 * 117.49472 * 145.02966 * 23 21 19 42 42 H 1.08994 * 117.50155 * 0.02562 * 23 21 19 43 43 H 1.09002 * 117.49797 * 336.59223 * 25 24 21 44 44 H 1.09002 * 117.50149 * 121.60945 * 25 24 21 45 45 H 1.08999 * 117.49658 * 238.38145 * 26 24 21 46 46 H 1.08997 * 117.49650 * 23.40097 * 26 24 21 47 47 H 1.09005 * 109.58763 * 173.14778 * 27 18 17 48 48 H 1.09002 * 109.58358 * 293.56509 * 27 18 17 49 49 H 1.09007 * 109.56664 * 185.55328 * 28 27 18 50 50 H 1.08993 * 109.36188 * 65.50121 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0047 1.4455 -2.1408 6 7 2.0189 3.3199 -1.5238 7 6 1.6932 3.9344 -2.7052 8 1 1.1310 3.3984 -3.4556 9 6 2.0874 5.2463 -2.9376 10 7 2.7720 5.8983 -2.0248 11 14 1.6443 6.0833 -4.5478 12 1 0.3324 6.7647 -4.4068 13 1 2.6874 7.0837 -4.8891 14 1 1.5609 5.0672 -5.6274 15 6 1.9954 -0.7659 1.1377 16 6 1.6311 -2.2429 0.9701 17 6 2.2111 -3.0436 2.1403 18 7 1.7453 -2.4462 3.3992 19 6 1.1286 -3.2006 4.3304 20 8 0.9533 -4.3844 4.1330 21 6 0.6570 -2.5733 5.6169 22 1 0.3020 -1.5458 5.5364 23 6 1.3808 -2.9718 6.9046 24 6 -0.0363 -3.4823 6.6335 25 6 -0.8025 -4.8064 6.6538 26 6 -1.3800 -3.5775 7.3588 27 6 1.9588 -1.0096 3.6210 28 6 1.3866 -0.2328 2.4367 29 1 -0.3634 0.4514 0.9232 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 1.5611 1.9274 0.8309 33 1 3.0797 1.3444 0.1083 34 1 2.5248 3.8008 -0.8502 35 1 3.0468 6.8143 -2.1870 36 1 3.0796 -0.6613 1.1753 37 1 2.0453 -2.6157 0.0334 38 1 0.5465 -2.3509 0.9576 39 1 3.2999 -3.0109 2.1013 40 1 1.8743 -4.0785 2.0803 41 1 1.5018 -2.2065 7.6713 42 1 2.1985 -3.6876 6.8215 43 1 -1.2799 -5.1259 5.7274 44 1 -0.4079 -5.6068 7.2798 45 1 -1.3653 -3.5693 8.4487 46 1 -2.2373 -3.0884 6.8963 47 1 1.4535 -0.7021 4.5365 48 1 3.0267 -0.8077 3.7052 49 1 1.6267 0.8251 2.5436 50 1 0.3044 -0.3598 2.4102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571334072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:32 Heat of formation + Delta-G solvation = -15.957640 kcal Electronic energy + Delta-G solvation = -29082.890175 eV Core-core repulsion = 25111.577561 eV Total energy + Delta-G solvation = -3971.312615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56400 -40.52149 -39.43373 -38.30695 -36.76108 -35.82179 -33.81877 -33.26409 -32.46730 -31.97555 -29.39149 -27.39122 -26.62398 -25.27148 -24.36101 -23.34832 -23.29523 -21.42523 -20.88078 -20.39792 -19.81443 -19.39789 -18.42951 -17.80356 -16.99004 -16.63576 -16.54044 -16.43065 -16.20404 -15.90263 -15.69462 -15.48075 -15.34284 -15.15936 -15.07339 -14.72624 -14.35846 -13.95338 -13.67930 -13.47370 -13.44329 -13.14237 -13.07365 -12.85585 -12.69609 -12.61387 -12.42137 -12.38640 -12.32145 -12.13003 -12.10539 -11.79944 -11.48926 -11.37841 -11.18236 -11.05921 -10.93479 -10.69373 -10.25306 -9.97632 -9.71282 -9.09032 -8.45004 -5.92940 1.38196 1.42090 1.42986 1.54436 1.89500 2.08644 2.29306 2.71076 2.78261 2.79473 3.22119 3.30671 3.43785 3.53253 3.74762 3.80382 3.89681 4.03426 4.03985 4.12653 4.25816 4.30709 4.35204 4.42884 4.48732 4.53718 4.54833 4.56182 4.66067 4.69816 4.74072 4.76626 4.78803 4.80025 4.83975 4.89848 4.98327 5.00346 5.04205 5.08898 5.20977 5.25693 5.31455 5.42969 5.54080 5.92510 6.10254 6.25867 6.37470 6.63681 7.13970 7.15763 7.59805 8.16426 8.72261 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.001973 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.816471 B =14185.968765 C =14482.002780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.531 5.531 3 C 0.060 3.940 4 C 0.440 3.560 5 O -0.617 6.617 6 N -0.575 5.575 7 C -0.331 4.331 8 H 0.077 0.923 9 C -0.013 4.013 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.272 1.272 13 H -0.271 1.271 14 H -0.275 1.275 15 C 0.087 3.913 16 C -0.116 4.116 17 C 0.118 3.882 18 N -0.606 5.606 19 C 0.536 3.464 20 O -0.581 6.581 21 C -0.150 4.150 22 H 0.146 0.854 23 C -0.081 4.081 24 C -0.229 4.229 25 C -0.132 4.132 26 C -0.109 4.109 27 C 0.114 3.886 28 C -0.168 4.168 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.135 0.865 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -13.625 22.694 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.253 5.253 3 C -0.071 4.071 4 C 0.227 3.773 5 O -0.503 6.503 6 N -0.212 5.212 7 C -0.460 4.460 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.197 1.197 13 H -0.195 1.195 14 H -0.200 1.200 15 C -0.021 4.021 16 C -0.154 4.154 17 C -0.005 4.005 18 N -0.338 5.338 19 C 0.326 3.674 20 O -0.462 6.462 21 C -0.170 4.170 22 H 0.163 0.837 23 C -0.118 4.118 24 C -0.229 4.229 25 C -0.169 4.169 26 C -0.146 4.146 27 C -0.008 4.008 28 C -0.207 4.207 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.230 0.770 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.153 0.847 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.120 0.880 45 H 0.137 0.863 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.917 -14.668 21.560 26.093 hybrid contribution -0.345 1.123 -0.426 1.249 sum -1.262 -13.545 21.134 25.134 Atomic orbital electron populations 1.22392 0.87536 1.01787 1.00307 1.61724 1.08479 1.12312 1.42820 1.21730 1.02082 0.89566 0.93758 1.20879 0.83614 0.82183 0.90577 1.90472 1.45189 1.65414 1.49216 1.41926 1.50109 1.11635 1.17578 1.19616 1.34294 0.96387 0.95730 0.90543 1.25989 0.96361 0.96660 1.02275 1.69664 1.38125 1.12615 1.35645 0.84966 0.78227 0.77795 0.77578 1.19710 1.19538 1.19998 1.21831 1.00159 0.92882 0.87230 1.21847 1.00892 0.94226 0.98460 1.21554 0.99621 0.97476 0.81858 1.48189 1.57721 1.10309 1.17558 1.20204 0.76396 0.85863 0.84928 1.90661 1.58029 1.17582 1.79891 1.22067 1.06194 1.00360 0.88391 0.83691 1.22757 0.91885 1.02019 0.95127 1.21460 0.95373 1.02441 1.03660 1.22575 1.01604 0.90889 1.01821 1.22838 0.92480 0.99307 0.99940 1.21820 1.02732 0.77548 0.98735 1.22551 1.01361 1.01163 0.95651 0.94636 0.92961 0.91439 0.91070 0.87121 0.76974 0.91358 0.88579 0.90216 0.92834 0.89540 0.90533 0.84673 0.88865 0.90349 0.87989 0.86289 0.88187 0.87426 0.88996 0.89266 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 8.42 127.69 1.07 1.96 16 2 N -0.53 -16.22 4.45 -901.43 -4.01 -20.23 16 3 C 0.06 1.93 5.02 85.55 0.43 2.36 16 4 C 0.44 20.51 7.48 87.65 0.66 21.17 16 5 O -0.62 -33.85 13.91 -3.08 -0.04 -33.89 16 6 N -0.57 -28.97 5.29 -306.99 -1.62 -30.59 16 7 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 10 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 11 Si 0.99 42.80 29.55 68.60 2.03 44.82 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 14 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 15 C 0.09 1.86 2.15 44.94 0.10 1.96 16 16 C -0.12 -2.49 5.25 30.67 0.16 -2.33 16 17 C 0.12 2.28 6.44 86.36 0.56 2.84 16 18 N -0.61 -11.02 2.98 -819.74 -2.44 -13.46 16 19 C 0.54 11.76 7.48 87.66 0.66 12.42 16 20 O -0.58 -17.52 15.66 -3.03 -0.05 -17.57 16 21 C -0.15 -2.31 5.13 -11.54 -0.06 -2.37 16 22 H 0.15 1.59 6.55 -2.38 -0.02 1.57 16 23 C -0.08 -0.97 10.24 30.61 0.31 -0.66 16 24 C -0.23 -3.67 5.06 -52.18 -0.26 -3.93 16 25 C -0.13 -2.27 10.16 30.59 0.31 -1.96 16 26 C -0.11 -1.34 10.53 30.59 0.32 -1.01 16 27 C 0.11 1.42 6.32 86.22 0.54 1.97 16 28 C -0.17 -2.79 4.57 30.53 0.14 -2.65 16 29 H 0.04 0.98 6.24 -2.39 -0.01 0.96 16 30 H 0.05 2.12 5.82 -2.38 -0.01 2.11 16 31 H 0.07 1.99 6.50 -2.39 -0.02 1.98 16 32 H 0.07 2.00 7.03 -2.39 -0.02 1.99 16 33 H 0.11 3.10 7.93 -2.38 -0.02 3.09 16 34 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 35 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.10 1.84 7.93 -2.39 -0.02 1.82 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.30 6.62 -2.39 -0.02 1.29 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.77 7.00 -2.39 -0.02 1.75 16 41 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.11 0.92 5.51 -2.38 -0.01 0.91 16 48 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.09 1.37 6.85 -2.38 -0.02 1.35 16 50 H 0.06 1.21 6.42 -2.39 -0.02 1.19 16 Total: -1.00 -73.75 392.67 0.59 -73.16 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.23 Total: 34.70 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.22 Total: 11.71 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -7.79 Total: -112.93 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.09 Total: -51.46 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -73.75 0.59 -73.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571334072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.198 kcal (2) G-P(sol) polarization free energy of solvation -73.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds