Wall clock time and date at job start Tue Mar 31 2020 18:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 120.00273 * 2 1 4 4 H 1.08000 * 119.99926 * 202.33210 * 3 2 1 5 5 C 1.38818 * 119.99779 * 22.33234 * 3 2 1 6 6 N 1.31622 * 119.99805 * 11.37414 * 5 3 2 7 7 Si 1.86797 * 119.99985 * 191.37375 * 5 3 2 8 8 H 1.48502 * 109.47098 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46931 * 119.99762 * 7 5 3 10 10 H 1.48492 * 109.47292 * 239.99842 * 7 5 3 11 11 C 1.46499 * 120.00053 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47033 * 269.99513 * 11 2 1 13 13 H 1.09008 * 109.47010 * 59.99737 * 12 11 2 14 14 O 1.42892 * 109.47281 * 300.00077 * 12 11 2 15 15 C 1.52993 * 109.47265 * 179.97438 * 12 11 2 16 16 N 1.46505 * 109.47296 * 185.00132 * 15 12 11 17 17 C 1.46502 * 119.99940 * 270.00295 * 16 15 12 18 18 C 1.34771 * 120.00070 * 90.00045 * 16 15 12 19 19 O 1.21288 * 119.99972 * 0.02562 * 18 16 15 20 20 C 1.50704 * 120.00141 * 179.97438 * 18 16 15 21 21 C 1.52999 * 109.47120 * 180.02562 * 20 18 16 22 22 C 1.53000 * 109.46983 * 180.02562 * 21 20 18 23 23 C 1.50694 * 109.47089 * 180.02562 * 22 21 20 24 24 C 1.38677 * 120.41691 * 269.71495 * 23 22 21 25 25 C 1.38625 * 118.42286 * 179.78256 * 24 23 22 26 26 C 1.38229 * 119.16056 * 0.51450 * 25 24 23 27 27 N 1.31853 * 120.76223 * 359.72433 * 26 25 24 28 28 C 1.31883 * 121.72638 * 0.02562 * 27 26 25 29 29 H 1.09004 * 109.46834 * 274.21101 * 1 2 3 30 30 H 1.08998 * 109.47262 * 34.20211 * 1 2 3 31 31 H 1.09001 * 109.47283 * 154.20812 * 1 2 3 32 32 H 0.97001 * 119.99381 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47806 * 149.99395 * 11 2 1 34 34 H 1.09008 * 109.47105 * 29.99395 * 11 2 1 35 35 H 0.96698 * 114.00123 * 299.99995 * 14 12 11 36 36 H 1.09005 * 109.47433 * 305.00404 * 15 12 11 37 37 H 1.08996 * 109.47011 * 65.00140 * 15 12 11 38 38 H 1.08993 * 109.46942 * 89.99579 * 17 16 15 39 39 H 1.08994 * 109.47049 * 209.99687 * 17 16 15 40 40 H 1.09005 * 109.46878 * 329.99868 * 17 16 15 41 41 H 1.09000 * 109.46959 * 300.00342 * 20 18 16 42 42 H 1.09003 * 109.46678 * 60.00254 * 20 18 16 43 43 H 1.08999 * 109.47076 * 300.00403 * 21 20 18 44 44 H 1.08999 * 109.47366 * 59.99997 * 21 20 18 45 45 H 1.09010 * 109.46646 * 299.99801 * 22 21 20 46 46 H 1.08991 * 109.47553 * 59.99873 * 22 21 20 47 47 H 1.08001 * 120.78509 * 0.02644 * 24 23 22 48 48 H 1.07995 * 120.42443 * 180.22670 * 25 24 23 49 49 H 1.07998 * 119.62033 * 179.74944 * 26 25 24 50 50 H 1.07999 * 119.61988 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2209 -0.3554 5 6 1.5338 2.3430 0.4568 6 7 0.3842 2.2691 1.0936 7 14 2.3363 4.0048 0.1678 8 1 3.6134 3.8168 -0.5664 9 1 1.4262 4.8612 -0.6344 10 1 2.6071 4.6576 1.4737 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 1 1.5002 -1.8415 1.9556 14 8 3.2249 -0.7154 2.1157 15 6 3.2170 -3.0362 1.4412 16 7 3.3570 -3.5199 2.8170 17 6 4.5218 -3.1301 3.6155 18 6 2.4142 -4.3232 3.3481 19 8 1.4501 -4.6462 2.6869 20 6 2.5584 -4.8212 4.7632 21 6 1.3626 -5.7079 5.1162 22 6 1.5088 -6.2129 6.5530 23 6 0.3313 -7.0868 6.9005 24 6 -0.8093 -6.5361 7.4653 25 6 -1.8697 -7.3775 7.7643 26 6 -1.7516 -8.7294 7.5014 27 7 -0.6497 -9.2191 6.9681 28 6 0.3767 -8.4479 6.6662 29 1 -0.3633 0.0755 1.0249 30 1 -0.3634 0.8499 -0.5776 31 1 -0.3634 -0.9253 -0.4471 32 1 -0.0463 3.0777 1.4125 33 1 3.1499 -1.1383 -0.5144 34 1 1.6083 -2.0282 -0.5147 35 1 4.0873 -0.5467 1.7123 36 1 2.6693 -3.7714 0.8516 37 1 4.2052 -2.8854 1.0068 38 1 4.3008 -2.2093 4.1551 39 1 4.7553 -3.9215 4.3278 40 1 5.3760 -2.9697 2.9577 41 1 3.4781 -5.3993 4.8529 42 1 2.5952 -3.9717 5.4453 43 1 0.4428 -5.1301 5.0263 44 1 1.3262 -6.5573 4.4341 45 1 2.4288 -6.7907 6.6432 46 1 1.5449 -5.3634 7.2349 47 1 -0.8714 -5.4763 7.6637 48 1 -2.7748 -6.9825 8.2014 49 1 -2.5716 -9.3922 7.7352 50 1 1.2631 -8.8851 6.2308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571607144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:59 Heat of formation + Delta-G solvation = -32.580857 kcal Electronic energy + Delta-G solvation = -28595.744594 eV Core-core repulsion = 24623.711142 eV Total energy + Delta-G solvation = -3972.033452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.48232 -39.87939 -37.34714 -35.60618 -35.21279 -34.36950 -32.58947 -31.75076 -31.27926 -29.69160 -27.62240 -26.79789 -25.83280 -25.22452 -23.84485 -23.27110 -21.96405 -21.25275 -20.39397 -19.05200 -17.41420 -16.95856 -16.83015 -16.77839 -16.15034 -16.08142 -15.48019 -15.11787 -14.73256 -14.58271 -14.40381 -14.26503 -13.82607 -13.57493 -13.34548 -13.29191 -13.25775 -12.97557 -12.75101 -12.59937 -12.42987 -12.18996 -11.86065 -11.80244 -11.52375 -11.31621 -11.10152 -10.93501 -10.83133 -10.59935 -10.43290 -10.22947 -10.06153 -9.95129 -9.83338 -9.78701 -9.70337 -9.49987 -9.21606 -8.48420 -8.31461 -6.64546 -5.62078 -3.06300 0.81687 1.00127 2.72926 3.08965 3.42063 3.47802 3.50246 3.52623 4.14355 4.39793 4.48139 4.49841 4.56542 4.68677 4.70601 4.87264 4.92876 4.99140 5.08797 5.13905 5.21703 5.28417 5.38065 5.38357 5.42553 5.44080 5.51561 5.55951 5.58058 5.77445 5.79946 5.85210 5.86115 5.99345 6.06770 6.07329 6.11867 6.14138 6.41937 6.50335 6.63325 6.83122 6.90281 7.44885 7.46827 7.68858 7.79977 7.88023 8.28264 8.43990 8.52152 9.31978 9.94994 10.44312 11.43893 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.002071 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.741190 B =13518.846119 C =14198.832228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.592 5.592 3 C -0.239 4.239 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.280 1.280 9 H -0.292 1.292 10 H -0.292 1.292 11 C 0.124 3.876 12 C 0.073 3.927 13 H 0.088 0.912 14 O -0.535 6.535 15 C 0.081 3.919 16 N -0.607 5.607 17 C 0.082 3.918 18 C 0.509 3.491 19 O -0.542 6.542 20 C -0.138 4.138 21 C -0.099 4.099 22 C -0.077 4.077 23 C -0.129 4.129 24 C -0.073 4.073 25 C -0.170 4.170 26 C 0.089 3.911 27 N -0.485 5.485 28 C 0.100 3.900 29 H 0.027 0.973 30 H 0.045 0.955 31 H -0.005 1.005 32 H 0.249 0.751 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.357 0.643 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.135 0.865 48 H 0.135 0.865 49 H 0.154 0.846 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -19.480 12.808 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.314 5.314 3 C -0.368 4.368 4 H 0.083 0.917 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.205 1.205 9 H -0.219 1.219 10 H -0.219 1.219 11 C -0.005 4.005 12 C 0.010 3.990 13 H 0.106 0.894 14 O -0.337 6.337 15 C -0.042 4.042 16 N -0.340 5.340 17 C -0.062 4.062 18 C 0.297 3.703 19 O -0.419 6.419 20 C -0.178 4.178 21 C -0.137 4.137 22 C -0.116 4.116 23 C -0.131 4.131 24 C -0.099 4.099 25 C -0.190 4.190 26 C -0.068 4.068 27 N -0.194 5.194 28 C -0.057 4.057 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.014 0.986 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.201 0.799 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.153 0.847 48 H 0.152 0.848 49 H 0.171 0.829 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.265 -20.386 12.716 24.403 hybrid contribution 0.805 1.998 -0.119 2.157 sum 5.071 -18.388 12.598 22.859 Atomic orbital electron populations 1.20804 0.82476 0.95492 0.99304 1.43870 1.01824 1.00377 1.85307 1.19092 0.97670 0.85080 1.35005 0.91658 1.25002 0.97791 0.98369 0.98569 1.70086 1.17931 1.26583 1.40712 0.86204 0.78501 0.84667 0.77221 1.20520 1.21898 1.21901 1.21457 0.96439 0.89424 0.93205 1.23162 0.94050 0.84487 0.97320 0.89379 1.86681 1.32084 1.59870 1.55069 1.22454 1.01329 0.98344 0.82109 1.47794 1.22957 1.48616 1.14633 1.21795 0.87735 1.00719 0.95910 1.20638 0.82283 0.78292 0.89091 1.90710 1.30442 1.58161 1.62584 1.21697 1.00610 1.01148 0.94317 1.21329 0.98083 0.99637 0.94648 1.20595 0.95213 0.98435 0.97308 1.20915 0.96953 0.95731 0.99454 1.21571 0.92405 1.00533 0.95395 1.22171 0.99898 0.95104 1.01780 1.22756 0.95484 0.93587 0.94954 1.67677 1.00630 1.40139 1.10910 1.22684 0.96907 0.89963 0.96179 0.95447 0.93594 0.98604 0.94047 0.93686 0.93710 0.79886 0.89619 0.90836 0.91700 0.91659 0.91310 0.89058 0.88808 0.90876 0.90981 0.90479 0.90489 0.84722 0.84759 0.82897 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.25 9.01 59.85 0.54 4.79 16 2 N -0.59 -15.13 2.87 -181.11 -0.52 -15.66 16 3 C -0.24 -6.55 9.02 -15.06 -0.14 -6.68 16 4 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16 5 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 6 N -0.91 -27.31 10.59 55.49 0.59 -26.72 16 7 Si 0.90 22.21 29.57 -169.99 -5.03 17.18 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 C 0.12 2.51 5.43 -4.04 -0.02 2.49 16 12 C 0.07 1.38 3.48 -26.73 -0.09 1.29 16 13 H 0.09 2.01 8.14 -51.92 -0.42 1.58 16 14 O -0.53 -10.60 12.17 -35.23 -0.43 -11.02 16 15 C 0.08 1.17 5.11 -4.04 -0.02 1.15 16 16 N -0.61 -7.93 2.84 -181.57 -0.52 -8.45 16 17 C 0.08 0.76 9.89 59.85 0.59 1.36 16 18 C 0.51 7.14 7.67 -10.99 -0.08 7.06 16 19 O -0.54 -9.85 15.56 5.55 0.09 -9.76 16 20 C -0.14 -1.28 4.25 -27.88 -0.12 -1.40 16 21 C -0.10 -0.95 4.49 -26.73 -0.12 -1.07 16 22 C -0.08 -0.55 5.37 -27.89 -0.15 -0.70 16 23 C -0.13 -1.11 5.15 -104.48 -0.54 -1.65 16 24 C -0.07 -0.61 9.86 -39.28 -0.39 -1.00 16 25 C -0.17 -1.34 10.11 -39.44 -0.40 -1.74 16 26 C 0.09 0.78 11.18 -17.55 -0.20 0.59 16 27 N -0.49 -5.20 10.36 -13.25 -0.14 -5.33 16 28 C 0.10 0.94 10.86 -17.55 -0.19 0.75 16 29 H 0.03 0.78 7.42 -51.93 -0.39 0.39 16 30 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 31 H 0.00 -0.11 7.84 -51.93 -0.41 -0.51 16 32 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 34 H 0.04 0.86 7.86 -51.92 -0.41 0.45 16 35 H 0.36 5.84 9.05 45.56 0.41 6.25 16 36 H 0.09 1.31 7.42 -51.93 -0.39 0.93 16 37 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.43 6.44 -51.93 -0.33 0.10 16 40 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 41 H 0.09 0.61 7.40 -51.93 -0.38 0.23 16 42 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 43 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 44 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.08 0.42 8.09 -51.92 -0.42 0.00 16 46 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 47 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 49 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 50 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 410.89 15.07 6.19 6.19 Total: -1.00 -36.39 410.89 -8.86 -45.26 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.69 Total: 3.16 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -1.41 Total: 5.15 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.59 Total: -56.16 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.34 Total: -20.78 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.39 -8.86 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571607144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.676 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds