Wall clock time and date at job start Tue Mar 31 2020 18:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 120.00273 * 2 1 4 4 H 1.08000 * 119.99926 * 202.33210 * 3 2 1 5 5 C 1.38818 * 119.99779 * 22.33234 * 3 2 1 6 6 N 1.31622 * 119.99805 * 11.37414 * 5 3 2 7 7 Si 1.86797 * 119.99985 * 191.37375 * 5 3 2 8 8 H 1.48502 * 109.47098 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.46931 * 119.99762 * 7 5 3 10 10 H 1.48492 * 109.47292 * 239.99842 * 7 5 3 11 11 C 1.46499 * 120.00053 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47033 * 269.99513 * 11 2 1 13 13 H 1.09008 * 109.47010 * 59.99737 * 12 11 2 14 14 O 1.42892 * 109.47281 * 300.00077 * 12 11 2 15 15 C 1.52993 * 109.47265 * 179.97438 * 12 11 2 16 16 N 1.46505 * 109.47296 * 185.00132 * 15 12 11 17 17 C 1.46502 * 119.99940 * 270.00295 * 16 15 12 18 18 C 1.34771 * 120.00070 * 90.00045 * 16 15 12 19 19 O 1.21288 * 119.99972 * 0.02562 * 18 16 15 20 20 C 1.50704 * 120.00141 * 179.97438 * 18 16 15 21 21 C 1.52999 * 109.47120 * 180.02562 * 20 18 16 22 22 C 1.53000 * 109.46983 * 180.02562 * 21 20 18 23 23 C 1.50694 * 109.47089 * 180.02562 * 22 21 20 24 24 C 1.38677 * 120.41691 * 269.71495 * 23 22 21 25 25 C 1.38625 * 118.42286 * 179.78256 * 24 23 22 26 26 C 1.38229 * 119.16056 * 0.51450 * 25 24 23 27 27 N 1.31853 * 120.76223 * 359.72433 * 26 25 24 28 28 C 1.31883 * 121.72638 * 0.02562 * 27 26 25 29 29 H 1.09004 * 109.46834 * 274.21101 * 1 2 3 30 30 H 1.08998 * 109.47262 * 34.20211 * 1 2 3 31 31 H 1.09001 * 109.47283 * 154.20812 * 1 2 3 32 32 H 0.97001 * 119.99381 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.47806 * 149.99395 * 11 2 1 34 34 H 1.09008 * 109.47105 * 29.99395 * 11 2 1 35 35 H 0.96698 * 114.00123 * 299.99995 * 14 12 11 36 36 H 1.09005 * 109.47433 * 305.00404 * 15 12 11 37 37 H 1.08996 * 109.47011 * 65.00140 * 15 12 11 38 38 H 1.08993 * 109.46942 * 89.99579 * 17 16 15 39 39 H 1.08994 * 109.47049 * 209.99687 * 17 16 15 40 40 H 1.09005 * 109.46878 * 329.99868 * 17 16 15 41 41 H 1.09000 * 109.46959 * 300.00342 * 20 18 16 42 42 H 1.09003 * 109.46678 * 60.00254 * 20 18 16 43 43 H 1.08999 * 109.47076 * 300.00403 * 21 20 18 44 44 H 1.08999 * 109.47366 * 59.99997 * 21 20 18 45 45 H 1.09010 * 109.46646 * 299.99801 * 22 21 20 46 46 H 1.08991 * 109.47553 * 59.99873 * 22 21 20 47 47 H 1.08001 * 120.78509 * 0.02644 * 24 23 22 48 48 H 1.07995 * 120.42443 * 180.22670 * 25 24 23 49 49 H 1.07998 * 119.62033 * 179.74944 * 26 25 24 50 50 H 1.07999 * 119.61988 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2209 -0.3554 5 6 1.5338 2.3430 0.4568 6 7 0.3842 2.2691 1.0936 7 14 2.3363 4.0048 0.1678 8 1 3.6134 3.8168 -0.5664 9 1 1.4262 4.8612 -0.6344 10 1 2.6071 4.6576 1.4737 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 1 1.5002 -1.8415 1.9556 14 8 3.2249 -0.7154 2.1157 15 6 3.2170 -3.0362 1.4412 16 7 3.3570 -3.5199 2.8170 17 6 4.5218 -3.1301 3.6155 18 6 2.4142 -4.3232 3.3481 19 8 1.4501 -4.6462 2.6869 20 6 2.5584 -4.8212 4.7632 21 6 1.3626 -5.7079 5.1162 22 6 1.5088 -6.2129 6.5530 23 6 0.3313 -7.0868 6.9005 24 6 -0.8093 -6.5361 7.4653 25 6 -1.8697 -7.3775 7.7643 26 6 -1.7516 -8.7294 7.5014 27 7 -0.6497 -9.2191 6.9681 28 6 0.3767 -8.4479 6.6662 29 1 -0.3633 0.0755 1.0249 30 1 -0.3634 0.8499 -0.5776 31 1 -0.3634 -0.9253 -0.4471 32 1 -0.0463 3.0777 1.4125 33 1 3.1499 -1.1383 -0.5144 34 1 1.6083 -2.0282 -0.5147 35 1 4.0873 -0.5467 1.7123 36 1 2.6693 -3.7714 0.8516 37 1 4.2052 -2.8854 1.0068 38 1 4.3008 -2.2093 4.1551 39 1 4.7553 -3.9215 4.3278 40 1 5.3760 -2.9697 2.9577 41 1 3.4781 -5.3993 4.8529 42 1 2.5952 -3.9717 5.4453 43 1 0.4428 -5.1301 5.0263 44 1 1.3262 -6.5573 4.4341 45 1 2.4288 -6.7907 6.6432 46 1 1.5449 -5.3634 7.2349 47 1 -0.8714 -5.4763 7.6637 48 1 -2.7748 -6.9825 8.2014 49 1 -2.5716 -9.3922 7.7352 50 1 1.2631 -8.8851 6.2308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571607144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:58 Heat of formation + Delta-G solvation = -57.916114 kcal Electronic energy + Delta-G solvation = -28596.843213 eV Core-core repulsion = 24623.711142 eV Total energy + Delta-G solvation = -3973.132071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.18520 -40.90206 -38.87231 -36.86939 -36.24027 -35.87702 -33.36083 -33.21464 -32.42826 -31.10899 -28.56394 -28.01958 -27.73683 -26.46387 -24.49024 -24.36101 -23.31333 -22.16710 -21.96558 -20.08285 -18.79433 -18.14535 -17.88378 -17.55384 -17.45385 -17.07201 -16.64419 -16.41131 -16.21014 -15.81531 -15.70538 -15.24563 -14.99249 -14.93912 -14.62097 -14.42066 -14.09419 -13.94226 -13.92584 -13.67174 -13.34710 -13.26684 -13.05770 -12.90277 -12.81566 -12.63267 -12.52572 -12.47576 -12.18087 -12.10473 -12.02411 -11.87535 -11.79137 -11.63951 -11.15198 -10.81152 -10.70025 -10.58046 -10.37488 -9.86012 -9.53439 -8.69896 -7.75857 -5.22218 0.18300 0.35278 1.47921 1.48409 1.58817 1.67498 2.12897 2.55331 2.86871 3.39712 3.54729 3.57948 3.62552 3.78244 3.84289 3.91500 4.06995 4.08484 4.08777 4.20501 4.23852 4.26331 4.37249 4.48831 4.54813 4.58525 4.62340 4.69565 4.74742 4.75520 4.80533 4.84239 4.87222 4.92874 4.98419 5.07462 5.11583 5.21924 5.24740 5.29976 5.37746 5.44479 5.58955 5.64153 5.70414 5.81549 6.36642 6.47405 7.03576 7.10185 7.20347 7.24302 7.89916 8.35986 9.30029 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016735 B = 0.002071 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.741190 B =13518.846119 C =14198.832228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.610 5.610 3 C -0.234 4.234 4 H 0.080 0.920 5 C -0.064 4.064 6 N -0.947 5.947 7 Si 0.970 3.030 8 H -0.259 1.259 9 H -0.298 1.298 10 H -0.298 1.298 11 C 0.119 3.881 12 C 0.090 3.910 13 H 0.038 0.962 14 O -0.555 6.555 15 C 0.093 3.907 16 N -0.609 5.609 17 C 0.077 3.923 18 C 0.495 3.505 19 O -0.595 6.595 20 C -0.128 4.128 21 C -0.093 4.093 22 C -0.067 4.067 23 C -0.136 4.136 24 C -0.087 4.087 25 C -0.172 4.172 26 C 0.075 3.925 27 N -0.516 5.516 28 C 0.084 3.916 29 H -0.008 1.008 30 H 0.021 0.979 31 H 0.023 0.977 32 H 0.242 0.758 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.373 0.627 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.147 0.853 48 H 0.157 0.843 49 H 0.173 0.827 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -20.120 13.362 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.332 5.332 3 C -0.364 4.364 4 H 0.097 0.903 5 C -0.258 4.258 6 N -0.596 5.596 7 Si 0.799 3.201 8 H -0.183 1.183 9 H -0.226 1.226 10 H -0.226 1.226 11 C -0.008 4.008 12 C 0.026 3.974 13 H 0.056 0.944 14 O -0.360 6.360 15 C -0.032 4.032 16 N -0.341 5.341 17 C -0.065 4.065 18 C 0.285 3.715 19 O -0.476 6.476 20 C -0.167 4.167 21 C -0.131 4.131 22 C -0.105 4.105 23 C -0.138 4.138 24 C -0.113 4.113 25 C -0.192 4.192 26 C -0.082 4.082 27 N -0.224 5.224 28 C -0.073 4.073 29 H 0.011 0.989 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.220 0.780 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.148 0.852 42 H 0.127 0.873 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.165 0.835 48 H 0.175 0.825 49 H 0.190 0.810 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.415 -21.052 13.272 25.967 hybrid contribution -0.154 2.130 -0.316 2.158 sum 7.261 -18.922 12.955 24.054 Atomic orbital electron populations 1.20496 0.83519 0.95677 0.96969 1.44107 1.01689 1.01939 1.85506 1.19494 0.97923 0.85748 1.33215 0.90268 1.25827 0.98629 1.02042 0.99268 1.70291 1.19744 1.26818 1.42712 0.85144 0.78167 0.80132 0.76626 1.18311 1.22575 1.22587 1.21674 0.97117 0.87471 0.94525 1.22716 0.92863 0.86782 0.94999 0.94375 1.86639 1.33230 1.60460 1.55671 1.22172 1.02267 0.95172 0.83554 1.47943 1.23865 1.47880 1.14379 1.22048 0.86635 1.01353 0.96480 1.21578 0.81444 0.77823 0.90610 1.90685 1.32562 1.60159 1.64220 1.21740 1.01954 1.01909 0.91124 1.21221 0.97055 0.98682 0.96147 1.20554 0.95586 0.98871 0.95447 1.21120 0.97664 0.95729 0.99297 1.21899 0.92638 1.01378 0.95393 1.22463 1.00649 0.94806 1.01254 1.23172 0.95658 0.94532 0.94816 1.67672 1.01584 1.41186 1.12006 1.22999 0.97290 0.90496 0.96471 0.98950 0.95996 0.95905 0.94913 0.91110 0.92715 0.77960 0.90694 0.87132 0.93016 0.88220 0.89365 0.85221 0.87255 0.93993 0.92597 0.88071 0.89142 0.83489 0.82514 0.80978 0.81534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.56 9.01 127.77 1.15 10.72 16 2 N -0.61 -31.19 2.87 -726.92 -2.09 -33.28 16 3 C -0.23 -12.66 9.02 84.03 0.76 -11.90 16 4 H 0.08 4.01 7.84 -2.91 -0.02 3.98 16 5 C -0.06 -3.67 5.13 84.86 0.44 -3.24 16 6 N -0.95 -58.79 10.59 21.65 0.23 -58.56 16 7 Si 0.97 45.84 29.57 68.60 2.03 47.87 16 8 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 9 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 10 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 11 C 0.12 4.70 5.43 86.38 0.47 5.17 16 12 C 0.09 3.33 3.48 30.59 0.11 3.43 16 13 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 14 O -0.56 -21.37 12.17 -148.98 -1.81 -23.18 16 15 C 0.09 2.50 5.11 86.38 0.44 2.94 16 16 N -0.61 -14.70 2.84 -846.76 -2.40 -17.10 16 17 C 0.08 1.15 9.89 127.77 1.26 2.42 16 18 C 0.50 13.48 7.67 87.66 0.67 14.16 16 19 O -0.60 -22.27 15.56 -3.05 -0.05 -22.31 16 20 C -0.13 -2.08 4.25 29.85 0.13 -1.96 16 21 C -0.09 -1.72 4.49 30.59 0.14 -1.58 16 22 C -0.07 -0.81 5.37 29.85 0.16 -0.65 16 23 C -0.14 -2.24 5.15 -19.77 -0.10 -2.34 16 24 C -0.09 -1.40 9.86 22.47 0.22 -1.18 16 25 C -0.17 -2.60 10.11 22.36 0.23 -2.38 16 26 C 0.07 1.29 11.18 84.69 0.95 2.24 16 27 N -0.52 -11.03 10.36 -195.84 -2.03 -13.06 16 28 C 0.08 1.54 10.86 84.67 0.92 2.46 16 29 H -0.01 -0.47 7.42 -2.38 -0.02 -0.49 16 30 H 0.02 1.23 7.19 -2.39 -0.02 1.21 16 31 H 0.02 1.06 7.84 -2.39 -0.02 1.04 16 32 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.07 2.44 8.03 -2.39 -0.02 2.42 16 34 H 0.05 2.04 7.86 -2.38 -0.02 2.02 16 35 H 0.37 11.28 9.05 -74.06 -0.67 10.61 16 36 H 0.07 2.22 7.42 -2.38 -0.02 2.21 16 37 H 0.11 2.18 7.89 -2.39 -0.02 2.16 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 0.82 6.44 -2.39 -0.02 0.81 16 40 H 0.09 1.01 7.89 -2.38 -0.02 0.99 16 41 H 0.13 1.14 7.40 -2.39 -0.02 1.13 16 42 H 0.11 1.50 8.11 -2.39 -0.02 1.48 16 43 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 44 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 45 H 0.10 0.76 8.09 -2.38 -0.02 0.74 16 46 H 0.09 0.88 8.09 -2.39 -0.02 0.86 16 47 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 48 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 49 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 50 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -83.39 410.89 2.06 -81.33 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.25 Total: 20.00 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 7.93 Total: 18.31 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -6.29 Total: -122.01 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.86 Total: -45.50 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -83.39 2.06 -81.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571607144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.416 kcal (2) G-P(sol) polarization free energy of solvation -83.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds