Wall clock time and date at job start Tue Mar 31 2020 18:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00168 * 2 1 4 4 C 1.46897 * 111.00130 * 123.95557 * 2 1 3 5 5 C 1.52999 * 109.47407 * 66.04476 * 4 2 1 6 6 C 1.53002 * 109.47320 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47072 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99820 * 270.00534 * 7 6 5 9 9 C 1.50704 * 109.46871 * 269.99509 * 8 7 6 10 10 H 1.08002 * 119.99930 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31504 * 119.99813 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99808 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47515 * 89.99678 * 13 11 9 15 15 H 1.48499 * 109.47012 * 209.99948 * 13 11 9 16 16 H 1.48505 * 109.47004 * 329.99545 * 13 11 9 17 17 C 1.34775 * 120.00307 * 90.00045 * 7 6 5 18 18 O 1.21587 * 119.99347 * 0.02562 * 17 7 6 19 19 N 1.34770 * 120.00125 * 179.97438 * 17 7 6 20 20 C 1.39954 * 119.99630 * 184.59721 * 19 17 7 21 21 C 1.38860 * 120.07078 * 324.90981 * 20 19 17 22 22 C 1.38117 * 119.93057 * 180.02562 * 21 20 19 23 23 C 1.38276 * 120.06982 * 0.02562 * 22 21 20 24 24 C 1.50702 * 119.93148 * 179.97438 * 23 22 21 25 25 O 1.42899 * 109.46911 * 90.00294 * 24 23 22 26 26 C 1.38279 * 120.13683 * 0.23632 * 23 22 21 27 27 C 1.38108 * 120.07386 * 359.48741 * 26 23 22 28 28 H 1.08997 * 109.46655 * 296.04264 * 1 2 3 29 29 H 1.08993 * 109.46920 * 56.04750 * 1 2 3 30 30 H 1.09001 * 109.47224 * 176.04633 * 1 2 3 31 31 H 1.08998 * 109.47461 * 183.95771 * 3 2 1 32 32 H 1.08997 * 109.46683 * 303.95458 * 3 2 1 33 33 H 1.08998 * 109.46882 * 63.95611 * 3 2 1 34 34 H 1.09003 * 109.47514 * 306.04633 * 4 2 1 35 35 H 1.09006 * 109.47483 * 186.04850 * 4 2 1 36 36 H 1.08997 * 109.47234 * 59.99997 * 5 4 2 37 37 H 1.09001 * 109.47187 * 300.00132 * 5 4 2 38 38 H 1.09007 * 109.46673 * 60.00489 * 6 5 4 39 39 H 1.08994 * 109.47602 * 300.00063 * 6 5 4 40 40 H 1.08996 * 109.47597 * 30.00227 * 8 7 6 41 41 H 1.09007 * 109.46852 * 150.00144 * 8 7 6 42 42 H 0.97006 * 119.99843 * 180.02562 * 12 11 9 43 43 H 0.96991 * 120.00597 * 4.59893 * 19 17 7 44 44 H 1.08004 * 120.03714 * 0.02562 * 21 20 19 45 45 H 1.08001 * 119.96252 * 180.02562 * 22 21 20 46 46 H 1.08996 * 109.46702 * 330.00167 * 24 23 22 47 47 H 1.09000 * 109.47067 * 209.99907 * 24 23 22 48 48 H 0.96707 * 113.99777 * 180.02562 * 25 24 23 49 49 H 1.08011 * 119.95957 * 179.72505 * 26 23 22 50 50 H 1.08005 * 120.03586 * 180.25304 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1804 -3.0405 2.1548 7 7 1.8313 -4.4543 1.9950 8 6 0.5747 -4.9656 2.5481 9 6 0.8042 -5.4422 3.9593 10 1 1.7876 -5.3709 4.4001 11 6 -0.2415 -5.9682 4.6879 12 7 -0.0414 -6.3836 5.9195 13 14 -1.9425 -6.0909 3.9255 14 1 -2.0855 -7.4015 3.2423 15 1 -2.9715 -5.9724 4.9896 16 1 -2.1227 -4.9959 2.9386 17 6 2.6661 -5.2846 1.3390 18 8 3.7091 -4.8603 0.8804 19 7 2.3452 -6.5853 1.1925 20 6 3.2539 -7.4674 0.5967 21 6 4.0716 -7.0307 -0.4371 22 6 4.9670 -7.9037 -1.0233 23 6 5.0494 -9.2116 -0.5820 24 6 6.0271 -10.1617 -1.2242 25 8 7.2755 -10.1008 -0.5315 26 6 4.2326 -9.6510 0.4437 27 6 3.3392 -8.7814 1.0378 28 1 -0.3632 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9162 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 2.0658 -2.6214 0.0451 37 1 0.5472 -2.3475 0.9323 38 1 1.7463 -2.6619 3.0803 39 1 3.2646 -2.9356 2.1924 40 1 -0.1715 -4.1712 2.5496 41 1 0.2202 -5.7960 1.9373 42 1 -0.7770 -6.7540 6.4320 43 1 1.4845 -6.9102 1.4997 44 1 4.0075 -6.0094 -0.7825 45 1 5.6036 -7.5645 -1.8271 46 1 6.1758 -9.8803 -2.2666 47 1 5.6332 -11.1769 -1.1745 48 1 7.9543 -10.6878 -0.8918 49 1 4.2962 -10.6744 0.7831 50 1 2.7045 -9.1241 1.8416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649262735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:57 Heat of formation + Delta-G solvation = -38.597969 kcal Electronic energy + Delta-G solvation = -29026.573406 eV Core-core repulsion = 25054.279033 eV Total energy + Delta-G solvation = -3972.294373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.27894 -38.79904 -37.68795 -36.69363 -35.38855 -34.35496 -32.82770 -31.72019 -30.67514 -30.02453 -28.11249 -27.63738 -26.28430 -25.02287 -22.81729 -22.72967 -22.52188 -21.06035 -20.63717 -19.24677 -17.82767 -17.50732 -17.10606 -16.82373 -15.81999 -15.57522 -15.45481 -15.36772 -15.07846 -14.55520 -14.49899 -14.16177 -13.99144 -13.69215 -13.60245 -13.39047 -13.04096 -12.83064 -12.63019 -12.47606 -12.38528 -12.18860 -11.99922 -11.84671 -11.72493 -11.35953 -11.22464 -11.20045 -10.99667 -10.94599 -10.78616 -10.37568 -10.22920 -10.14607 -9.89731 -9.69070 -9.39257 -8.81014 -8.63342 -8.39312 -7.99724 -7.55789 -6.28503 -4.31524 1.49288 1.69827 3.09723 3.15428 3.18518 3.22824 3.60871 3.92233 4.09313 4.18500 4.46082 4.54697 4.94721 5.00674 5.03188 5.03783 5.09866 5.23862 5.26919 5.32120 5.33386 5.34817 5.49441 5.59209 5.63292 5.68500 5.71552 5.75438 5.80715 5.90210 5.94528 5.96599 6.10472 6.25098 6.29311 6.39840 6.49107 6.52570 6.59252 6.68353 6.81337 6.90731 6.98907 7.01368 7.17088 7.34007 7.40389 7.53362 7.57665 8.20093 8.49528 8.79315 9.11972 9.30238 10.83976 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007415 B = 0.003651 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3775.089611 B = 7668.178497 C =10785.188392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.130 4.130 6 C 0.140 3.860 7 N -0.603 5.603 8 C 0.211 3.789 9 C -0.545 4.545 10 H 0.080 0.920 11 C 0.077 3.923 12 N -0.887 5.887 13 Si 0.870 3.130 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.264 1.264 17 C 0.711 3.289 18 O -0.596 6.596 19 N -0.683 5.683 20 C 0.189 3.811 21 C -0.128 4.128 22 C -0.083 4.083 23 C -0.128 4.128 24 C 0.124 3.876 25 O -0.567 6.567 26 C -0.080 4.080 27 C -0.154 4.154 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.019 0.981 42 H 0.267 0.733 43 H 0.414 0.586 44 H 0.143 0.857 45 H 0.120 0.880 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.375 0.625 49 H 0.122 0.878 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 1.255 -14.223 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.170 4.170 6 C 0.015 3.985 7 N -0.335 5.335 8 C 0.090 3.910 9 C -0.583 4.583 10 H 0.098 0.902 11 C -0.127 4.127 12 N -0.524 5.524 13 Si 0.696 3.304 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.189 1.189 17 C 0.414 3.586 18 O -0.476 6.476 19 N -0.331 5.331 20 C 0.092 3.908 21 C -0.148 4.148 22 C -0.102 4.102 23 C -0.130 4.130 24 C 0.046 3.954 25 O -0.373 6.373 26 C -0.099 4.099 27 C -0.175 4.175 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.253 0.747 44 H 0.160 0.840 45 H 0.138 0.862 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.221 0.779 49 H 0.139 0.861 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.586 1.785 -14.374 15.193 hybrid contribution -1.554 -0.327 0.582 1.691 sum 3.032 1.458 -13.792 14.196 Atomic orbital electron populations 1.22434 0.87530 1.02616 1.00127 1.61969 1.08003 1.13493 1.43769 1.22366 1.00796 0.88982 1.00194 1.22075 1.00253 0.93759 0.90903 1.21988 1.01290 0.93438 1.00240 1.21135 1.00925 0.79136 0.97292 1.47048 1.22066 1.08189 1.56229 1.19730 0.81932 0.94648 0.94717 1.21410 0.98464 1.42071 0.96373 0.90235 1.24894 0.98616 0.94514 0.94647 1.69890 1.32545 1.40628 1.09321 0.86958 0.84637 0.79234 0.79586 1.19807 1.20762 1.18880 1.15747 0.83236 0.80537 0.79112 1.90829 1.25355 1.75936 1.55467 1.42843 1.19881 1.07523 1.62832 1.17663 0.91954 0.89286 0.91870 1.21333 0.97315 1.01054 0.95115 1.20852 0.97567 0.92226 0.99511 1.19457 0.98744 0.94939 0.99817 1.20914 0.83414 0.96989 0.94049 1.86640 1.22912 1.67994 1.59710 1.20715 0.94996 0.99236 0.94928 1.20973 1.01863 0.93153 1.01465 0.95653 0.91763 0.90905 0.91368 0.91639 0.95799 0.94609 0.90566 0.90906 0.91979 0.90247 0.90465 0.94429 0.96285 0.92278 0.74672 0.83975 0.86215 0.93149 0.93147 0.77883 0.86050 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.06 0.56 0.80 16 2 N -0.55 -6.83 5.02 -251.27 -1.26 -8.09 16 3 C 0.03 0.25 9.57 60.06 0.57 0.83 16 4 C 0.06 0.76 4.96 -3.83 -0.02 0.75 16 5 C -0.13 -1.98 5.46 -26.73 -0.15 -2.12 16 6 C 0.14 2.46 5.41 -4.04 -0.02 2.44 16 7 N -0.60 -12.15 2.46 -180.79 -0.44 -12.59 16 8 C 0.21 4.51 4.03 -5.19 -0.02 4.49 16 9 C -0.54 -14.02 9.94 -34.44 -0.34 -14.36 16 10 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 11 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.89 -25.32 13.96 55.43 0.77 -24.55 16 13 Si 0.87 19.14 27.47 -169.99 -4.67 14.47 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 17 C 0.71 14.86 8.12 -86.93 -0.71 14.15 16 18 O -0.60 -13.34 13.36 5.29 0.07 -13.27 16 19 N -0.68 -13.06 5.22 -14.22 -0.07 -13.13 16 20 C 0.19 3.38 6.30 -83.69 -0.53 2.85 16 21 C -0.13 -2.20 8.70 -39.40 -0.34 -2.54 16 22 C -0.08 -1.23 9.69 -39.61 -0.38 -1.61 16 23 C -0.13 -1.79 5.51 -104.59 -0.58 -2.37 16 24 C 0.12 1.31 7.17 36.01 0.26 1.56 16 25 O -0.57 -6.51 13.64 -35.23 -0.48 -6.99 16 26 C -0.08 -1.14 9.69 -39.61 -0.38 -1.52 16 27 C -0.15 -2.46 9.97 -39.40 -0.39 -2.86 16 28 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 31 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.04 0.46 8.12 -51.93 -0.42 0.03 16 35 H 0.08 0.97 8.06 -51.93 -0.42 0.56 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 0.94 6.55 -51.93 -0.34 0.60 16 38 H 0.08 1.39 8.07 -51.92 -0.42 0.97 16 39 H 0.08 1.40 7.42 -51.93 -0.39 1.02 16 40 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 41 H 0.02 0.39 5.73 -51.92 -0.30 0.09 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.41 7.65 6.52 -40.82 -0.27 7.38 16 44 H 0.14 2.62 6.22 -52.48 -0.33 2.29 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 47 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 48 H 0.37 2.23 9.12 45.56 0.42 2.64 16 49 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 50 H 0.13 1.96 8.06 -52.48 -0.42 1.53 16 LS Contribution 406.09 15.07 6.12 6.12 Total: -1.00 -32.18 406.09 -9.93 -42.11 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -7.40 Total: 13.49 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -2.57 Total: 2.42 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -1.01 Total: -58.36 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.41 Total: -20.25 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.67 Total: 14.47 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.18 -9.93 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649262735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.514 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds