Wall clock time and date at job start Tue Mar 31 2020 18:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 111.00168 * 2 1 4 4 C 1.46897 * 111.00130 * 123.95557 * 2 1 3 5 5 C 1.52999 * 109.47407 * 66.04476 * 4 2 1 6 6 C 1.53002 * 109.47320 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47072 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99820 * 270.00534 * 7 6 5 9 9 C 1.50704 * 109.46871 * 269.99509 * 8 7 6 10 10 H 1.08002 * 119.99930 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99981 * 179.97438 * 9 8 7 12 12 N 1.31504 * 119.99813 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99808 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47515 * 89.99678 * 13 11 9 15 15 H 1.48499 * 109.47012 * 209.99948 * 13 11 9 16 16 H 1.48505 * 109.47004 * 329.99545 * 13 11 9 17 17 C 1.34775 * 120.00307 * 90.00045 * 7 6 5 18 18 O 1.21587 * 119.99347 * 0.02562 * 17 7 6 19 19 N 1.34770 * 120.00125 * 179.97438 * 17 7 6 20 20 C 1.39954 * 119.99630 * 184.59721 * 19 17 7 21 21 C 1.38860 * 120.07078 * 324.90981 * 20 19 17 22 22 C 1.38117 * 119.93057 * 180.02562 * 21 20 19 23 23 C 1.38276 * 120.06982 * 0.02562 * 22 21 20 24 24 C 1.50702 * 119.93148 * 179.97438 * 23 22 21 25 25 O 1.42899 * 109.46911 * 90.00294 * 24 23 22 26 26 C 1.38279 * 120.13683 * 0.23632 * 23 22 21 27 27 C 1.38108 * 120.07386 * 359.48741 * 26 23 22 28 28 H 1.08997 * 109.46655 * 296.04264 * 1 2 3 29 29 H 1.08993 * 109.46920 * 56.04750 * 1 2 3 30 30 H 1.09001 * 109.47224 * 176.04633 * 1 2 3 31 31 H 1.08998 * 109.47461 * 183.95771 * 3 2 1 32 32 H 1.08997 * 109.46683 * 303.95458 * 3 2 1 33 33 H 1.08998 * 109.46882 * 63.95611 * 3 2 1 34 34 H 1.09003 * 109.47514 * 306.04633 * 4 2 1 35 35 H 1.09006 * 109.47483 * 186.04850 * 4 2 1 36 36 H 1.08997 * 109.47234 * 59.99997 * 5 4 2 37 37 H 1.09001 * 109.47187 * 300.00132 * 5 4 2 38 38 H 1.09007 * 109.46673 * 60.00489 * 6 5 4 39 39 H 1.08994 * 109.47602 * 300.00063 * 6 5 4 40 40 H 1.08996 * 109.47597 * 30.00227 * 8 7 6 41 41 H 1.09007 * 109.46852 * 150.00144 * 8 7 6 42 42 H 0.97006 * 119.99843 * 180.02562 * 12 11 9 43 43 H 0.96991 * 120.00597 * 4.59893 * 19 17 7 44 44 H 1.08004 * 120.03714 * 0.02562 * 21 20 19 45 45 H 1.08001 * 119.96252 * 180.02562 * 22 21 20 46 46 H 1.08996 * 109.46702 * 330.00167 * 24 23 22 47 47 H 1.09000 * 109.47067 * 209.99907 * 24 23 22 48 48 H 0.96707 * 113.99777 * 180.02562 * 25 24 23 49 49 H 1.08011 * 119.95957 * 179.72505 * 26 23 22 50 50 H 1.08005 * 120.03586 * 180.25304 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 6 2.1804 -3.0405 2.1548 7 7 1.8313 -4.4543 1.9950 8 6 0.5747 -4.9656 2.5481 9 6 0.8042 -5.4422 3.9593 10 1 1.7876 -5.3709 4.4001 11 6 -0.2415 -5.9682 4.6879 12 7 -0.0414 -6.3836 5.9195 13 14 -1.9425 -6.0909 3.9255 14 1 -2.0855 -7.4015 3.2423 15 1 -2.9715 -5.9724 4.9896 16 1 -2.1227 -4.9959 2.9386 17 6 2.6661 -5.2846 1.3390 18 8 3.7091 -4.8603 0.8804 19 7 2.3452 -6.5853 1.1925 20 6 3.2539 -7.4674 0.5967 21 6 4.0716 -7.0307 -0.4371 22 6 4.9670 -7.9037 -1.0233 23 6 5.0494 -9.2116 -0.5820 24 6 6.0271 -10.1617 -1.2242 25 8 7.2755 -10.1008 -0.5315 26 6 4.2326 -9.6510 0.4437 27 6 3.3392 -8.7814 1.0378 28 1 -0.3632 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9162 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 2.0658 -2.6214 0.0451 37 1 0.5472 -2.3475 0.9323 38 1 1.7463 -2.6619 3.0803 39 1 3.2646 -2.9356 2.1924 40 1 -0.1715 -4.1712 2.5496 41 1 0.2202 -5.7960 1.9373 42 1 -0.7770 -6.7540 6.4320 43 1 1.4845 -6.9102 1.4997 44 1 4.0075 -6.0094 -0.7825 45 1 5.6036 -7.5645 -1.8271 46 1 6.1758 -9.8803 -2.2666 47 1 5.6332 -11.1769 -1.1745 48 1 7.9543 -10.6878 -0.8918 49 1 4.2962 -10.6744 0.7831 50 1 2.7045 -9.1241 1.8416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649262735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:56 Heat of formation + Delta-G solvation = -61.713295 kcal Electronic energy + Delta-G solvation = -29027.575762 eV Core-core repulsion = 25054.279033 eV Total energy + Delta-G solvation = -3973.296729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77220 -40.06347 -38.70906 -37.65469 -36.92772 -35.77082 -34.71170 -33.09564 -31.88456 -31.23820 -29.88309 -28.48499 -27.47410 -26.12455 -24.56257 -24.02727 -23.73232 -22.22104 -21.76721 -20.77954 -19.31738 -19.09352 -18.37047 -18.27335 -17.04722 -16.79163 -16.61948 -16.53143 -16.36349 -16.06176 -15.63846 -15.50614 -15.26045 -14.92619 -14.82707 -14.68044 -14.42792 -14.20951 -14.05248 -13.74950 -13.52478 -13.36813 -13.27645 -13.19683 -12.70299 -12.61064 -12.58918 -12.42483 -12.32575 -12.28306 -12.03926 -12.02541 -11.73815 -11.51051 -11.33217 -10.98429 -10.87029 -10.80767 -9.85786 -9.59798 -9.31687 -8.95687 -8.32351 -6.41634 0.26980 0.47976 1.38477 1.40317 1.49594 1.67272 2.10834 2.31703 2.79735 2.87017 3.01055 3.09079 3.69102 3.89691 3.92800 4.07236 4.10631 4.22253 4.23235 4.32421 4.36726 4.43199 4.48295 4.49620 4.54377 4.59857 4.61080 4.65346 4.70168 4.74264 4.77311 4.80764 4.83463 5.00378 5.01383 5.06790 5.13519 5.24727 5.31032 5.36765 5.39050 5.59098 5.63748 5.67783 5.99771 6.06717 6.11036 6.11830 6.20212 6.63611 6.87784 7.00627 7.24342 7.52175 8.84005 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007415 B = 0.003651 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3775.089611 B = 7668.178497 C =10785.188392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.064 3.936 5 C -0.112 4.112 6 C 0.138 3.862 7 N -0.607 5.607 8 C 0.221 3.779 9 C -0.544 4.544 10 H 0.026 0.974 11 C 0.022 3.978 12 N -0.940 5.940 13 Si 0.941 3.059 14 H -0.259 1.259 15 H -0.286 1.286 16 H -0.238 1.238 17 C 0.704 3.296 18 O -0.617 6.617 19 N -0.682 5.682 20 C 0.157 3.843 21 C -0.142 4.142 22 C -0.085 4.085 23 C -0.127 4.127 24 C 0.124 3.876 25 O -0.593 6.593 26 C -0.079 4.079 27 C -0.161 4.161 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.269 0.731 43 H 0.415 0.585 44 H 0.123 0.877 45 H 0.141 0.859 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.399 0.601 49 H 0.150 0.850 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 0.649 -16.455 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.289 5.289 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.151 4.151 6 C 0.014 3.986 7 N -0.340 5.340 8 C 0.099 3.901 9 C -0.583 4.583 10 H 0.044 0.956 11 C -0.178 4.178 12 N -0.579 5.579 13 Si 0.764 3.236 14 H -0.184 1.184 15 H -0.211 1.211 16 H -0.161 1.161 17 C 0.407 3.593 18 O -0.499 6.499 19 N -0.330 5.330 20 C 0.062 3.938 21 C -0.163 4.163 22 C -0.104 4.104 23 C -0.128 4.128 24 C 0.047 3.953 25 O -0.403 6.403 26 C -0.098 4.098 27 C -0.182 4.182 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.254 0.746 44 H 0.141 0.859 45 H 0.159 0.841 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.249 0.751 49 H 0.167 0.833 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.912 1.174 -16.644 17.137 hybrid contribution -1.151 -0.197 1.285 1.736 sum 2.761 0.976 -15.359 15.636 Atomic orbital electron populations 1.22460 0.86799 1.02414 1.01039 1.61955 1.08847 1.14836 1.43243 1.22420 1.00994 0.87782 1.01111 1.21960 1.00387 0.92435 0.91653 1.21771 1.01023 0.94428 0.97913 1.21240 1.00429 0.78408 0.98516 1.47130 1.21783 1.09091 1.55977 1.19572 0.82734 0.95532 0.92312 1.21490 0.96226 1.42112 0.98445 0.95581 1.25806 1.03350 0.93786 0.94832 1.70059 1.34158 1.42313 1.11380 0.85810 0.78219 0.80591 0.79017 1.18384 1.21146 1.16121 1.15941 0.83096 0.81160 0.79151 1.90801 1.26155 1.76474 1.56426 1.42787 1.20222 1.07091 1.62851 1.17934 0.92929 0.89963 0.93008 1.21277 0.98467 1.00753 0.95804 1.21130 0.96971 0.92509 0.99775 1.19952 0.98779 0.95090 0.98954 1.20987 0.82576 0.97259 0.94467 1.86558 1.23829 1.69250 1.60626 1.21086 0.93976 1.00197 0.94524 1.21125 1.02545 0.92735 1.01813 0.95298 0.90168 0.91782 0.91164 0.90201 0.95250 0.94064 0.90576 0.92669 0.91603 0.90294 0.91589 0.92949 0.94424 0.92194 0.74637 0.85917 0.84091 0.90978 0.90659 0.75097 0.83252 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.32 127.69 1.19 1.62 16 2 N -0.56 -13.33 5.02 -948.87 -4.76 -18.09 16 3 C 0.02 0.46 9.57 127.69 1.22 1.68 16 4 C 0.06 1.65 4.96 86.30 0.43 2.07 16 5 C -0.11 -3.41 5.46 30.59 0.17 -3.24 16 6 C 0.14 4.99 5.41 86.38 0.47 5.46 16 7 N -0.61 -25.09 2.46 -844.17 -2.07 -27.17 16 8 C 0.22 9.37 4.03 85.63 0.35 9.72 16 9 C -0.54 -28.80 9.94 25.60 0.25 -28.54 16 10 H 0.03 1.62 8.06 -2.91 -0.02 1.60 16 11 C 0.02 1.15 5.47 84.66 0.46 1.61 16 12 N -0.94 -55.30 13.96 21.45 0.30 -55.00 16 13 Si 0.94 38.78 27.47 68.60 1.88 40.66 16 14 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 15 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.24 -8.76 6.54 99.48 0.65 -8.11 16 17 C 0.70 30.52 8.12 179.06 1.45 31.97 16 18 O -0.62 -28.84 13.36 -3.99 -0.05 -28.90 16 19 N -0.68 -26.89 5.22 -317.18 -1.65 -28.55 16 20 C 0.16 5.75 6.30 38.14 0.24 5.99 16 21 C -0.14 -5.01 8.70 22.39 0.19 -4.82 16 22 C -0.09 -2.45 9.69 22.25 0.22 -2.23 16 23 C -0.13 -3.26 5.51 -19.84 -0.11 -3.37 16 24 C 0.12 2.18 7.17 71.24 0.51 2.69 16 25 O -0.59 -11.83 13.64 -148.98 -2.03 -13.86 16 26 C -0.08 -2.12 9.69 22.25 0.22 -1.90 16 27 C -0.16 -5.16 9.97 22.39 0.22 -4.94 16 28 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 30 H 0.06 1.42 6.47 -2.39 -0.02 1.41 16 31 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 32 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 33 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.04 1.01 8.12 -2.39 -0.02 0.99 16 35 H 0.08 1.93 8.06 -2.38 -0.02 1.92 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.94 6.55 -2.39 -0.02 1.93 16 38 H 0.08 2.83 8.07 -2.38 -0.02 2.81 16 39 H 0.07 2.52 7.42 -2.39 -0.02 2.50 16 40 H 0.05 2.10 7.13 -2.39 -0.02 2.09 16 41 H 0.04 1.49 5.73 -2.38 -0.01 1.48 16 42 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 43 H 0.41 15.63 6.52 -92.71 -0.60 15.03 16 44 H 0.12 4.75 6.22 -2.91 -0.02 4.73 16 45 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 46 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 47 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 48 H 0.40 3.47 9.12 -74.05 -0.68 2.79 16 49 H 0.15 3.09 8.06 -2.90 -0.02 3.07 16 50 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -72.33 406.09 -1.30 -73.63 By element: Atomic # 1 Polarization: 43.88 SS G_CDS: -0.39 Total: 43.49 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 7.48 Total: 13.78 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -8.19 Total: -128.80 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -2.09 Total: -42.75 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.88 Total: 40.66 kcal Total: -72.33 -1.30 -73.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649262735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.912 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds