Wall clock time and date at job start Tue Mar 31 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46500 * 120.00228 * 2 1 4 4 C 1.52998 * 109.47389 * 274.23084 * 3 2 1 5 5 H 1.09005 * 112.74095 * 76.44471 * 4 3 2 6 6 C 1.53506 * 113.47719 * 207.29345 * 4 3 2 7 7 C 1.53509 * 83.57552 * 140.79130 * 6 4 3 8 8 N 1.47472 * 87.93317 * 333.97723 * 7 6 4 9 9 C 1.46897 * 111.00427 * 138.70476 * 8 7 6 10 10 C 1.50696 * 109.47178 * 79.48647 * 9 8 7 11 11 O 1.21293 * 120.00266 * 0.02562 * 10 9 8 12 12 N 1.34786 * 119.99919 * 180.02562 * 10 9 8 13 13 C 1.37094 * 119.99760 * 180.02562 * 12 10 9 14 14 H 1.08000 * 120.00154 * 359.97438 * 13 12 10 15 15 C 1.38947 * 119.99619 * 180.02562 * 13 12 10 16 16 N 1.31412 * 120.00271 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99548 * 179.97438 * 15 13 12 18 18 H 1.48488 * 109.47394 * 359.97438 * 17 15 13 19 19 H 1.48509 * 109.46986 * 119.99989 * 17 15 13 20 20 H 1.48497 * 109.46731 * 239.99581 * 17 15 13 21 21 C 1.34776 * 120.00034 * 180.02562 * 2 1 3 22 22 O 1.21283 * 120.00270 * 4.80195 * 21 2 1 23 23 C 1.50700 * 120.00188 * 184.80453 * 21 2 1 24 24 C 1.53890 * 113.58798 * 81.33248 * 23 21 2 25 25 C 1.53424 * 86.82355 * 89.71882 * 24 23 21 26 26 C 1.52460 * 128.61042 * 165.09995 * 25 24 23 27 27 C 1.52464 * 128.51796 * 245.01878 * 25 24 23 28 28 C 1.53255 * 87.72211 * 25.01673 * 25 24 23 29 29 H 1.09004 * 109.47322 * 269.99775 * 1 2 3 30 30 H 1.09002 * 109.47546 * 29.99644 * 1 2 3 31 31 H 1.09002 * 109.47548 * 149.99810 * 1 2 3 32 32 H 1.09002 * 109.46541 * 34.23373 * 3 2 1 33 33 H 1.08998 * 109.47130 * 154.22741 * 3 2 1 34 34 H 1.09004 * 114.16732 * 254.43624 * 6 4 3 35 35 H 1.08995 * 114.17506 * 27.14137 * 6 4 3 36 36 H 1.08994 * 113.47786 * 219.20675 * 7 6 4 37 37 H 1.09007 * 113.47559 * 88.74262 * 7 6 4 38 38 H 1.09000 * 109.47024 * 199.48747 * 9 8 7 39 39 H 1.09003 * 109.47032 * 319.48684 * 9 8 7 40 40 H 0.96999 * 119.99539 * 0.02562 * 12 10 9 41 41 H 0.97004 * 119.99999 * 180.02562 * 16 15 13 42 42 H 1.09006 * 112.83077 * 310.21940 * 23 21 2 43 43 H 1.09000 * 113.64405 * 204.18282 * 24 23 21 44 44 H 1.08998 * 113.64761 * 335.19261 * 24 23 21 45 45 H 1.08999 * 117.51404 * 224.95746 * 26 25 24 46 46 H 1.09005 * 117.51161 * 10.06145 * 26 25 24 47 47 H 1.09001 * 117.51364 * 349.79519 * 27 25 24 48 48 H 1.08995 * 117.51514 * 134.86832 * 27 25 24 49 49 H 1.09003 * 113.64678 * 220.48915 * 28 25 24 50 50 H 1.09000 * 113.64986 * 89.48516 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3604 1.7636 -1.4385 5 1 1.4451 2.1978 -1.8410 6 6 3.5996 2.6457 -1.6451 7 6 3.7059 1.8859 -2.9748 8 7 2.9832 0.7714 -2.3343 9 6 1.9908 0.1922 -3.2496 10 6 2.6812 -0.7311 -4.2201 11 8 3.8817 -0.8914 -4.1554 12 7 1.9645 -1.3789 -5.1600 13 6 2.5925 -2.2193 -6.0425 14 1 3.6615 -2.3619 -5.9849 15 6 1.8538 -2.8866 -7.0118 16 7 0.5531 -2.7126 -7.0823 17 14 2.7096 -4.0312 -8.2148 18 1 4.1661 -4.0528 -7.9268 19 1 2.1561 -5.4020 -8.0731 20 1 2.4867 -3.5483 -9.6013 21 6 2.1388 -1.1672 -0.0005 22 8 1.5356 -2.2157 -0.0889 23 6 3.6418 -1.1696 0.1088 24 6 4.1546 -1.0172 1.5517 25 6 4.1047 -2.5481 1.6404 26 6 4.7446 -3.4622 2.6793 27 6 3.2216 -3.4195 2.5266 28 6 4.2566 -2.5803 0.1158 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6433 2.0081 0.5782 33 1 3.1806 1.1206 0.4468 34 1 3.3784 3.7075 -1.7543 35 1 4.4131 2.4427 -0.9488 36 1 4.7302 1.6371 -3.2520 37 1 3.1503 2.3536 -3.7878 38 1 1.2523 -0.3688 -2.6769 39 1 1.4937 0.9914 -3.7994 40 1 1.0045 -1.2504 -5.2119 41 1 0.0373 -3.1788 -7.7588 42 1 4.1183 -0.4896 -0.5975 43 1 5.1629 -0.6083 1.6165 44 1 3.4497 -0.5167 2.2156 45 1 5.2622 -4.3507 2.3176 46 1 5.1752 -2.9944 3.5647 47 1 2.6506 -2.9236 3.3116 48 1 2.7371 -4.2795 2.0644 49 1 3.6334 -3.3312 -0.3699 50 1 5.2933 -2.6071 -0.2199 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656092093.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:18 Heat of formation + Delta-G solvation = 28.189489 kcal Electronic energy + Delta-G solvation = -30900.715054 eV Core-core repulsion = 26931.316802 eV Total energy + Delta-G solvation = -3969.398252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86327 -39.88911 -38.06796 -37.64577 -35.23724 -33.84747 -33.50418 -31.31118 -30.62325 -28.84990 -27.21010 -25.77305 -25.62352 -23.79864 -23.69474 -22.92543 -22.30280 -19.76702 -19.26798 -19.18527 -18.03316 -17.83672 -16.81548 -16.21693 -15.97541 -15.65986 -15.60644 -15.13458 -15.01869 -14.53595 -14.45302 -14.21759 -13.82057 -13.74614 -13.45859 -12.98880 -12.71086 -12.50936 -12.32391 -12.29999 -12.06898 -11.85821 -11.67409 -11.56130 -11.49642 -11.43621 -11.37830 -11.22614 -11.03706 -10.85106 -10.47996 -10.30806 -10.17360 -10.16166 -9.93691 -9.70750 -9.45863 -9.35659 -8.87274 -8.39817 -8.18699 -7.90601 -6.36575 -3.76931 2.92026 3.10950 3.19704 3.29762 3.37120 3.82579 3.94670 4.02742 4.26131 4.40897 4.42900 4.68415 4.70137 4.78545 4.87703 4.99182 5.02130 5.04137 5.09636 5.18103 5.27300 5.37093 5.39241 5.43527 5.54767 5.59609 5.65592 5.67724 5.69653 5.73880 5.75969 5.81017 5.82887 5.89072 5.92977 6.02399 6.09917 6.18712 6.24273 6.30446 6.30655 6.40583 6.43824 6.55667 6.68565 7.22037 7.52874 7.60020 8.10989 8.49136 8.66764 9.23345 9.59851 10.11567 10.81511 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.003882 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.272121 B = 7210.868802 C = 8434.453435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.616 5.616 3 C 0.129 3.871 4 C -0.002 4.002 5 H 0.077 0.923 6 C -0.138 4.138 7 C 0.009 3.991 8 N -0.431 5.431 9 C 0.013 3.987 10 C 0.448 3.552 11 O -0.577 6.577 12 N -0.565 5.565 13 C -0.295 4.295 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.903 5.903 17 Si 0.928 3.072 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.551 3.449 22 O -0.535 6.535 23 C -0.128 4.128 24 C -0.085 4.085 25 C -0.156 4.156 26 C -0.172 4.172 27 C -0.144 4.144 28 C -0.079 4.079 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.390 0.610 41 H 0.270 0.730 42 H 0.125 0.875 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 10.982 18.344 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.350 5.350 3 C 0.005 3.995 4 C -0.113 4.113 5 H 0.095 0.905 6 C -0.176 4.176 7 C -0.120 4.120 8 N -0.153 5.153 9 C -0.119 4.119 10 C 0.233 3.767 11 O -0.460 6.460 12 N -0.202 5.202 13 C -0.425 4.425 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.208 1.208 21 C 0.340 3.660 22 O -0.410 6.410 23 C -0.149 4.149 24 C -0.123 4.123 25 C -0.156 4.156 26 C -0.209 4.209 27 C -0.181 4.181 28 C -0.116 4.116 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.223 0.777 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.114 0.886 49 H 0.099 0.901 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.964 9.593 18.453 21.008 hybrid contribution -1.061 0.190 -1.271 1.667 sum 1.903 9.784 17.182 19.864 Atomic orbital electron populations 1.21580 0.79898 1.03096 1.01206 1.47620 1.06288 1.06132 1.74935 1.21593 0.97705 0.85106 0.95054 1.23974 0.97584 0.93865 0.95914 0.90518 1.23205 0.97476 0.98265 0.98676 1.23625 1.01927 0.91070 0.95365 1.68699 1.16348 1.18568 1.11725 1.22446 0.95336 0.98690 0.95437 1.19612 0.88040 0.85176 0.83879 1.90510 1.14383 1.67322 1.73818 1.41862 1.09979 1.40014 1.28370 1.19723 0.94668 1.19790 1.08311 0.87943 1.25246 0.95461 0.98635 0.98636 1.69625 1.05453 1.43676 1.35677 0.85820 0.79535 0.79532 0.79575 1.19238 1.20742 1.20823 1.19977 0.89170 0.82627 0.74217 1.90667 1.70181 1.31339 1.48855 1.22268 0.92491 1.01210 0.98909 1.22479 1.01200 0.93718 0.94884 1.22283 1.05615 0.93613 0.94062 1.22802 0.95758 1.01798 1.00515 1.22657 0.92784 1.01599 1.01016 1.22319 1.00964 0.96223 0.92129 0.93212 0.91724 0.90489 0.90487 0.89342 0.90754 0.88805 0.89117 0.91781 0.89601 0.93060 0.77668 0.92005 0.85734 0.88939 0.91729 0.88874 0.89136 0.89339 0.88564 0.90098 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.49 59.84 0.63 1.60 16 2 N -0.62 -7.83 2.60 -181.58 -0.47 -8.30 16 3 C 0.13 1.25 5.38 -4.04 -0.02 1.22 16 4 C 0.00 -0.02 3.39 -71.45 -0.24 -0.27 16 5 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 6 C -0.14 -1.29 8.00 -26.21 -0.21 -1.50 16 7 C 0.01 0.12 7.08 -7.56 -0.05 0.07 16 8 N -0.43 -6.61 3.87 -237.99 -0.92 -7.53 16 9 C 0.01 0.24 5.24 -4.98 -0.03 0.21 16 10 C 0.45 10.90 7.68 -10.98 -0.08 10.82 16 11 O -0.58 -15.76 15.61 5.55 0.09 -15.67 16 12 N -0.57 -14.93 5.29 -10.96 -0.06 -14.99 16 13 C -0.30 -8.49 9.68 -14.94 -0.14 -8.64 16 14 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -25.36 13.05 55.50 0.72 -24.63 16 17 Si 0.93 21.69 29.55 -169.99 -5.02 16.67 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.55 8.85 6.54 -10.99 -0.07 8.78 16 22 O -0.53 -10.71 15.38 5.55 0.09 -10.63 16 23 C -0.13 -1.84 2.88 -90.85 -0.26 -2.10 16 24 C -0.09 -0.96 6.98 -26.05 -0.18 -1.14 16 25 C -0.16 -2.00 2.77 -154.71 -0.43 -2.43 16 26 C -0.17 -1.88 10.53 -26.94 -0.28 -2.17 16 27 C -0.14 -1.79 10.53 -26.94 -0.28 -2.08 16 28 C -0.08 -1.21 7.48 -26.14 -0.20 -1.41 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.08 1.07 7.36 -51.93 -0.38 0.69 16 32 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.09 0.81 5.63 -51.93 -0.29 0.51 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.80 7.93 -51.93 -0.41 0.39 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.06 0.88 7.61 -51.92 -0.40 0.48 16 38 H 0.09 1.61 7.97 -51.93 -0.41 1.20 16 39 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 40 H 0.39 10.00 7.90 -40.82 -0.32 9.68 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.12 1.89 6.28 -51.93 -0.33 1.56 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.08 1.49 7.41 -51.93 -0.38 1.10 16 50 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 403.33 15.07 6.08 6.08 Total: -1.00 -34.27 403.33 -9.76 -44.03 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -8.30 Total: 13.49 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.96 Total: 1.48 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.73 Total: -55.45 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: 0.17 Total: -26.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.27 -9.76 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656092093.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.222 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds