Wall clock time and date at job start Tue Mar 31 2020 18:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 120.00055 * 2 1 4 4 C 1.52994 * 109.47497 * 89.99655 * 3 2 1 5 5 H 1.09009 * 112.95821 * 287.14480 * 4 3 2 6 6 C 1.53934 * 113.76189 * 155.49559 * 4 3 2 7 7 C 1.53935 * 86.45688 * 221.91056 * 6 4 3 8 8 N 1.47961 * 113.75986 * 58.93454 * 4 3 2 9 9 C 1.46902 * 111.00005 * 251.90081 * 8 4 3 10 10 C 1.50702 * 109.47267 * 189.99947 * 9 8 4 11 11 O 1.21296 * 119.99494 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00134 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00203 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00145 * 359.97438 * 13 12 10 15 15 C 1.38944 * 120.00446 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00001 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00369 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47000 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47035 * 120.00008 * 17 15 13 20 20 H 1.48500 * 109.47521 * 240.00386 * 17 15 13 21 21 C 1.34773 * 120.00125 * 179.97438 * 2 1 3 22 22 O 1.21288 * 120.00200 * 180.02562 * 21 2 1 23 23 C 1.50701 * 119.99980 * 359.97438 * 21 2 1 24 24 C 1.53880 * 113.59227 * 279.21973 * 23 21 2 25 25 C 1.53424 * 86.82683 * 220.45430 * 24 23 21 26 26 C 1.52458 * 128.60857 * 165.09878 * 25 24 23 27 27 C 1.52464 * 128.51934 * 245.01555 * 25 24 23 28 28 C 1.53254 * 87.71888 * 25.01631 * 25 24 23 29 29 H 1.09001 * 109.46540 * 90.00177 * 1 2 3 30 30 H 1.08991 * 109.47022 * 210.00254 * 1 2 3 31 31 H 1.08999 * 109.46915 * 330.00644 * 1 2 3 32 32 H 1.09002 * 109.46929 * 329.99404 * 3 2 1 33 33 H 1.09005 * 109.46867 * 209.99762 * 3 2 1 34 34 H 1.09002 * 113.73279 * 336.32246 * 6 4 3 35 35 H 1.09002 * 113.73078 * 107.49945 * 6 4 3 36 36 H 1.09001 * 113.76001 * 138.09365 * 7 6 4 37 37 H 1.09000 * 113.75996 * 269.45181 * 7 6 4 38 38 H 1.08997 * 109.47246 * 310.00098 * 9 8 4 39 39 H 1.09007 * 109.46957 * 69.99875 * 9 8 4 40 40 H 0.97001 * 119.99910 * 359.97438 * 12 10 9 41 41 H 0.96996 * 119.99994 * 179.97438 * 16 15 13 42 42 H 1.09005 * 112.82646 * 50.33606 * 23 21 2 43 43 H 1.09000 * 113.64822 * 334.92325 * 24 23 21 44 44 H 1.09002 * 113.64952 * 105.92790 * 24 23 21 45 45 H 1.09005 * 117.51406 * 224.96073 * 26 25 24 46 46 H 1.08995 * 117.51308 * 10.06088 * 26 25 24 47 47 H 1.09002 * 117.51092 * 349.79696 * 27 25 24 48 48 H 1.08996 * 117.51203 * 134.86043 * 27 25 24 49 49 H 1.09005 * 113.64482 * 220.49007 * 28 25 24 50 50 H 1.09003 * 113.64717 * 89.48437 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 1 1.5533 2.0713 1.9419 6 6 3.6663 2.6441 1.5998 7 6 4.0106 1.8274 2.8584 8 7 3.2270 0.7321 2.2375 9 6 2.3730 0.0671 3.2307 10 6 3.2316 -0.7322 4.1768 11 8 4.4364 -0.7467 4.0370 12 7 2.6608 -1.4315 5.1775 13 6 3.4418 -2.1582 6.0385 14 1 4.5147 -2.1706 5.9146 15 6 2.8534 -2.8788 7.0705 16 7 1.5480 -2.8642 7.2209 17 14 3.9176 -3.8696 8.2432 18 1 5.3450 -3.7219 7.8610 19 1 3.7226 -3.3722 9.6288 20 1 3.5315 -5.3017 8.1724 21 6 2.1389 -1.1672 0.0005 22 8 3.3518 -1.1672 0.0010 23 6 1.3855 -2.4723 0.0017 24 6 0.8824 -2.8917 1.3941 25 6 1.2904 -4.3218 1.0169 26 6 1.4627 -5.5332 1.9264 27 6 0.3993 -5.5440 0.8247 28 6 2.2985 -3.7105 0.0378 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1383 -0.5138 34 1 4.4005 2.5479 0.7999 35 1 3.3988 3.6800 1.8086 36 1 5.0730 1.6060 2.9613 37 1 3.5667 2.2213 3.7726 38 1 1.8159 0.8175 3.7915 39 1 1.6754 -0.5987 2.7225 40 1 1.6972 -1.4201 5.2890 41 1 1.1372 -3.3676 7.9411 42 1 0.6184 -2.5184 -0.7714 43 1 1.4655 -2.4728 2.2142 44 1 -0.1918 -2.7635 1.5279 45 1 2.3476 -6.1523 1.7782 46 1 1.1193 -5.4421 2.9568 47 1 -0.6435 -5.4599 1.1306 48 1 0.5843 -6.1696 -0.0485 49 1 2.3581 -4.2377 -0.9144 50 1 3.2766 -3.5197 0.4797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656092095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:21 Heat of formation + Delta-G solvation = 25.571688 kcal Electronic energy + Delta-G solvation = -31149.410792 eV Core-core repulsion = 27179.899024 eV Total energy + Delta-G solvation = -3969.511768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58653 -39.64654 -38.16303 -37.49978 -35.23337 -33.83890 -33.47564 -31.27324 -30.51950 -29.00859 -26.57891 -25.73356 -25.59400 -24.67324 -23.57100 -22.58308 -22.20380 -19.39656 -19.18172 -18.83437 -18.25377 -17.82725 -16.96669 -16.18101 -15.92837 -15.74172 -15.42637 -15.14719 -14.97125 -14.53075 -14.35231 -14.09972 -13.75147 -13.63837 -13.26603 -12.93675 -12.59727 -12.57331 -12.31779 -12.21443 -12.08343 -11.87284 -11.60889 -11.51202 -11.40849 -11.38088 -11.28831 -11.18906 -11.02037 -10.66877 -10.39983 -10.30350 -10.18426 -10.16767 -10.15578 -9.54782 -9.45016 -9.21162 -8.70437 -8.26886 -8.05287 -7.89350 -6.36615 -3.76439 2.95859 3.11454 3.19157 3.29304 3.37240 3.86775 3.97730 4.10074 4.28475 4.47290 4.60732 4.68231 4.75597 4.84589 4.92015 4.98192 5.05177 5.09576 5.15378 5.21023 5.28916 5.33169 5.38002 5.43176 5.56949 5.59908 5.64590 5.70000 5.74279 5.76544 5.82523 5.84958 5.91741 5.98080 6.01226 6.07729 6.17257 6.20318 6.31257 6.35289 6.36720 6.44087 6.51626 6.66478 6.85789 7.40426 7.58552 7.60461 8.12357 8.54938 8.68381 9.24685 9.60612 10.13883 10.81496 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008776 B = 0.005115 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.595554 B = 5472.348475 C = 7807.925460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.620 5.620 3 C 0.140 3.860 4 C 0.004 3.996 5 H 0.072 0.928 6 C -0.138 4.138 7 C 0.017 3.983 8 N -0.424 5.424 9 C 0.014 3.986 10 C 0.448 3.552 11 O -0.572 6.572 12 N -0.568 5.568 13 C -0.292 4.292 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.904 5.904 17 Si 0.926 3.074 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.522 3.478 22 O -0.501 6.501 23 C -0.131 4.131 24 C -0.082 4.082 25 C -0.160 4.160 26 C -0.160 4.160 27 C -0.154 4.154 28 C -0.074 4.074 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.389 0.611 41 H 0.269 0.731 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.067 0.933 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 5.256 -15.465 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.355 5.355 3 C 0.016 3.984 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.176 4.176 7 C -0.111 4.111 8 N -0.146 5.146 9 C -0.118 4.118 10 C 0.233 3.767 11 O -0.454 6.454 12 N -0.205 5.205 13 C -0.422 4.422 14 H 0.119 0.881 15 C -0.179 4.179 16 N -0.546 5.546 17 Si 0.753 3.247 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.309 3.691 22 O -0.373 6.373 23 C -0.152 4.152 24 C -0.119 4.119 25 C -0.160 4.160 26 C -0.197 4.197 27 C -0.191 4.191 28 C -0.111 4.111 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.222 0.778 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.118 0.882 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.085 0.915 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.870 4.575 -15.743 17.775 hybrid contribution -1.041 0.057 1.406 1.750 sum -7.911 4.632 -14.337 17.018 Atomic orbital electron populations 1.21772 0.80246 1.03191 1.01284 1.47712 1.06271 1.06024 1.75444 1.21325 0.97758 0.84405 0.94881 1.23966 0.96302 0.93850 0.96617 0.90999 1.23369 0.97304 0.97404 0.99517 1.23731 1.01718 0.90731 0.94958 1.68606 1.13943 1.17009 1.15076 1.22463 0.96115 0.98657 0.94604 1.19696 0.88853 0.84562 0.83612 1.90537 1.14571 1.66446 1.73875 1.41853 1.09548 1.42969 1.26168 1.19718 0.92826 1.23235 1.06430 0.88051 1.25199 0.95998 0.98323 0.98397 1.69618 1.08985 1.42929 1.33102 0.85854 0.80125 0.79101 0.79619 1.19265 1.20863 1.20773 1.20370 0.88058 0.84599 0.76025 1.90754 1.13458 1.86628 1.46472 1.22610 0.99880 0.92706 1.00006 1.22499 1.00784 0.93228 0.95381 1.22109 1.01792 0.89850 1.02292 1.22799 1.00429 1.00231 0.96240 1.22769 0.96249 0.99115 1.00969 1.22359 0.97834 0.92867 0.98051 0.93021 0.90945 0.91447 0.90768 0.89361 0.89161 0.91471 0.88920 0.92079 0.93689 0.89995 0.77777 0.92105 0.87611 0.88644 0.91025 0.88747 0.88184 0.88840 0.88948 0.91458 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.13 59.85 0.61 1.27 16 2 N -0.62 -7.55 2.85 -181.57 -0.52 -8.06 16 3 C 0.14 1.64 5.56 -4.04 -0.02 1.62 16 4 C 0.00 0.05 3.57 -66.65 -0.24 -0.19 16 5 H 0.07 0.86 7.80 -51.92 -0.40 0.45 16 6 C -0.14 -1.71 7.83 -25.80 -0.20 -1.91 16 7 C 0.02 0.29 6.78 -2.57 -0.02 0.27 16 8 N -0.42 -7.60 4.71 -231.83 -1.09 -8.70 16 9 C 0.01 0.26 5.31 -4.97 -0.03 0.24 16 10 C 0.45 11.09 7.59 -10.99 -0.08 11.01 16 11 O -0.57 -16.37 15.13 5.54 0.08 -16.29 16 12 N -0.57 -14.75 5.29 -10.96 -0.06 -14.80 16 13 C -0.29 -8.33 9.68 -14.94 -0.14 -8.47 16 14 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 17 Si 0.93 21.50 29.55 -169.99 -5.02 16.48 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.52 7.99 6.43 -10.99 -0.07 7.92 16 22 O -0.50 -9.96 14.91 5.55 0.08 -9.88 16 23 C -0.13 -1.70 2.80 -90.85 -0.25 -1.95 16 24 C -0.08 -1.14 6.81 -26.05 -0.18 -1.32 16 25 C -0.16 -2.22 3.09 -154.71 -0.48 -2.70 16 26 C -0.16 -2.28 10.53 -26.94 -0.28 -2.56 16 27 C -0.15 -1.78 10.53 -26.94 -0.28 -2.06 16 28 C -0.07 -1.06 7.42 -26.14 -0.19 -1.25 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.61 5.66 -51.93 -0.29 0.31 16 31 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.09 1.22 7.19 -51.93 -0.37 0.84 16 34 H 0.09 1.12 7.94 -51.93 -0.41 0.70 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 37 H 0.06 1.01 7.79 -51.93 -0.40 0.60 16 38 H 0.05 0.79 7.70 -51.93 -0.40 0.39 16 39 H 0.08 1.49 6.07 -51.92 -0.32 1.18 16 40 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 41 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.11 1.09 7.91 -51.93 -0.41 0.68 16 43 H 0.10 1.69 6.43 -51.93 -0.33 1.35 16 44 H 0.07 0.84 7.62 -51.93 -0.40 0.44 16 45 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 47 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.10 1.80 7.44 -51.93 -0.39 1.41 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -34.53 400.52 -9.91 -44.44 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -8.18 Total: 14.38 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.97 Total: 0.41 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.94 Total: -55.59 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: 0.17 Total: -26.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.53 -9.91 -44.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656092095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.011 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds