Wall clock time and date at job start Tue Mar 31 2020 18:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46502 * 120.00055 * 2 1 4 4 C 1.52994 * 109.47497 * 89.99655 * 3 2 1 5 5 H 1.09009 * 112.95821 * 287.14480 * 4 3 2 6 6 C 1.53934 * 113.76189 * 155.49559 * 4 3 2 7 7 C 1.53935 * 86.45688 * 221.91056 * 6 4 3 8 8 N 1.47961 * 113.75986 * 58.93454 * 4 3 2 9 9 C 1.46902 * 111.00005 * 251.90081 * 8 4 3 10 10 C 1.50702 * 109.47267 * 189.99947 * 9 8 4 11 11 O 1.21296 * 119.99494 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00134 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00203 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00145 * 359.97438 * 13 12 10 15 15 C 1.38944 * 120.00446 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00001 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00369 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47000 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47035 * 120.00008 * 17 15 13 20 20 H 1.48500 * 109.47521 * 240.00386 * 17 15 13 21 21 C 1.34773 * 120.00125 * 179.97438 * 2 1 3 22 22 O 1.21288 * 120.00200 * 180.02562 * 21 2 1 23 23 C 1.50701 * 119.99980 * 359.97438 * 21 2 1 24 24 C 1.53880 * 113.59227 * 279.21973 * 23 21 2 25 25 C 1.53424 * 86.82683 * 220.45430 * 24 23 21 26 26 C 1.52458 * 128.60857 * 165.09878 * 25 24 23 27 27 C 1.52464 * 128.51934 * 245.01555 * 25 24 23 28 28 C 1.53254 * 87.71888 * 25.01631 * 25 24 23 29 29 H 1.09001 * 109.46540 * 90.00177 * 1 2 3 30 30 H 1.08991 * 109.47022 * 210.00254 * 1 2 3 31 31 H 1.08999 * 109.46915 * 330.00644 * 1 2 3 32 32 H 1.09002 * 109.46929 * 329.99404 * 3 2 1 33 33 H 1.09005 * 109.46867 * 209.99762 * 3 2 1 34 34 H 1.09002 * 113.73279 * 336.32246 * 6 4 3 35 35 H 1.09002 * 113.73078 * 107.49945 * 6 4 3 36 36 H 1.09001 * 113.76001 * 138.09365 * 7 6 4 37 37 H 1.09000 * 113.75996 * 269.45181 * 7 6 4 38 38 H 1.08997 * 109.47246 * 310.00098 * 9 8 4 39 39 H 1.09007 * 109.46957 * 69.99875 * 9 8 4 40 40 H 0.97001 * 119.99910 * 359.97438 * 12 10 9 41 41 H 0.96996 * 119.99994 * 179.97438 * 16 15 13 42 42 H 1.09005 * 112.82646 * 50.33606 * 23 21 2 43 43 H 1.09000 * 113.64822 * 334.92325 * 24 23 21 44 44 H 1.09002 * 113.64952 * 105.92790 * 24 23 21 45 45 H 1.09005 * 117.51406 * 224.96073 * 26 25 24 46 46 H 1.08995 * 117.51308 * 10.06088 * 26 25 24 47 47 H 1.09002 * 117.51092 * 349.79696 * 27 25 24 48 48 H 1.08996 * 117.51203 * 134.86043 * 27 25 24 49 49 H 1.09005 * 113.64482 * 220.49007 * 28 25 24 50 50 H 1.09003 * 113.64717 * 89.48437 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4424 5 1 1.5533 2.0713 1.9419 6 6 3.6663 2.6441 1.5998 7 6 4.0106 1.8274 2.8584 8 7 3.2270 0.7321 2.2375 9 6 2.3730 0.0671 3.2307 10 6 3.2316 -0.7322 4.1768 11 8 4.4364 -0.7467 4.0370 12 7 2.6608 -1.4315 5.1775 13 6 3.4418 -2.1582 6.0385 14 1 4.5147 -2.1706 5.9146 15 6 2.8534 -2.8788 7.0705 16 7 1.5480 -2.8642 7.2209 17 14 3.9176 -3.8696 8.2432 18 1 5.3450 -3.7219 7.8610 19 1 3.7226 -3.3722 9.6288 20 1 3.5315 -5.3017 8.1724 21 6 2.1389 -1.1672 0.0005 22 8 3.3518 -1.1672 0.0010 23 6 1.3855 -2.4723 0.0017 24 6 0.8824 -2.8917 1.3941 25 6 1.2904 -4.3218 1.0169 26 6 1.4627 -5.5332 1.9264 27 6 0.3993 -5.5440 0.8247 28 6 2.2985 -3.7105 0.0378 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1383 -0.5138 34 1 4.4005 2.5479 0.7999 35 1 3.3988 3.6800 1.8086 36 1 5.0730 1.6060 2.9613 37 1 3.5667 2.2213 3.7726 38 1 1.8159 0.8175 3.7915 39 1 1.6754 -0.5987 2.7225 40 1 1.6972 -1.4201 5.2890 41 1 1.1372 -3.3676 7.9411 42 1 0.6184 -2.5184 -0.7714 43 1 1.4655 -2.4728 2.2142 44 1 -0.1918 -2.7635 1.5279 45 1 2.3476 -6.1523 1.7782 46 1 1.1193 -5.4421 2.9568 47 1 -0.6435 -5.4599 1.1306 48 1 0.5843 -6.1696 -0.0485 49 1 2.3581 -4.2377 -0.9144 50 1 3.2766 -3.5197 0.4797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656092095.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:20 Heat of formation + Delta-G solvation = 1.122805 kcal Electronic energy + Delta-G solvation = -31150.470975 eV Core-core repulsion = 27179.899024 eV Total energy + Delta-G solvation = -3970.571951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74058 -40.93315 -39.66876 -39.03161 -36.32340 -35.95292 -34.55610 -33.35257 -31.99069 -30.07076 -27.53783 -27.40695 -26.81866 -25.78329 -25.28341 -23.63172 -23.26377 -21.14096 -20.52246 -19.96022 -19.85952 -19.36434 -18.02943 -17.80742 -17.18264 -16.94710 -16.83038 -16.49364 -16.26147 -16.04442 -15.77304 -15.62356 -15.35858 -15.01281 -14.59836 -14.08057 -13.89153 -13.73068 -13.66388 -13.55414 -13.33071 -13.07410 -12.99554 -12.91814 -12.81810 -12.57022 -12.46329 -12.44194 -12.35309 -12.27650 -12.17532 -11.84142 -11.61403 -11.51558 -11.26070 -11.24362 -10.65826 -10.38177 -10.37955 -10.03508 -9.70137 -9.27656 -8.49648 -5.97738 1.31485 1.36320 1.50511 1.82730 2.01542 2.15583 2.25926 2.78838 2.87296 3.16213 3.28660 3.39270 3.55338 3.63336 3.67361 3.82887 3.85495 3.94499 4.08097 4.18919 4.23279 4.25639 4.36540 4.39047 4.42781 4.46568 4.51483 4.62593 4.70796 4.74739 4.77789 4.80375 4.81529 4.85935 4.96135 4.96448 4.99506 5.02115 5.07583 5.22303 5.26381 5.27877 5.36862 5.39210 5.50900 5.80761 5.91824 6.16552 6.57373 6.58981 7.10514 7.46330 7.51844 8.09868 8.68062 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008776 B = 0.005115 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.595554 B = 5472.348475 C = 7807.925460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.614 5.614 3 C 0.138 3.862 4 C 0.012 3.988 5 H 0.098 0.902 6 C -0.113 4.113 7 C 0.004 3.996 8 N -0.459 5.459 9 C 0.033 3.967 10 C 0.441 3.559 11 O -0.619 6.619 12 N -0.571 5.571 13 C -0.331 4.331 14 H 0.070 0.930 15 C -0.008 4.008 16 N -0.916 5.916 17 Si 0.987 3.013 18 H -0.279 1.279 19 H -0.266 1.266 20 H -0.268 1.268 21 C 0.513 3.487 22 O -0.562 6.562 23 C -0.113 4.113 24 C -0.079 4.079 25 C -0.174 4.174 26 C -0.192 4.192 27 C -0.111 4.111 28 C -0.080 4.080 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.394 0.606 41 H 0.278 0.722 42 H 0.147 0.853 43 H 0.048 0.952 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.087 0.913 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 6.066 -16.906 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.347 5.347 3 C 0.015 3.985 4 C -0.098 4.098 5 H 0.115 0.885 6 C -0.151 4.151 7 C -0.125 4.125 8 N -0.182 5.182 9 C -0.099 4.099 10 C 0.229 3.771 11 O -0.505 6.505 12 N -0.209 5.209 13 C -0.460 4.460 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.558 5.558 17 Si 0.811 3.189 18 H -0.204 1.204 19 H -0.191 1.191 20 H -0.194 1.194 21 C 0.302 3.698 22 O -0.439 6.439 23 C -0.134 4.134 24 C -0.116 4.116 25 C -0.174 4.174 26 C -0.229 4.229 27 C -0.148 4.148 28 C -0.118 4.118 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.165 0.835 43 H 0.066 0.934 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.106 0.894 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.704 5.415 -17.186 20.958 hybrid contribution 0.137 -0.194 1.864 1.879 sum -10.567 5.221 -15.322 19.331 Atomic orbital electron populations 1.22088 0.77346 1.04349 1.03407 1.47806 1.08058 1.05174 1.73670 1.21439 0.97696 0.85333 0.94040 1.24120 0.96961 0.92056 0.96692 0.88464 1.23232 0.96653 0.98703 0.96529 1.23723 0.99530 0.91981 0.97257 1.68630 1.15489 1.18878 1.15244 1.22265 0.95194 0.98544 0.93887 1.20756 0.88952 0.83933 0.83503 1.90500 1.17054 1.67933 1.74984 1.41870 1.09486 1.43104 1.26397 1.19586 0.91945 1.25895 1.08604 0.91181 1.25934 0.97364 0.98398 0.99061 1.69662 1.09792 1.42802 1.33495 0.84963 0.77820 0.78158 0.77952 1.20381 1.19125 1.19351 1.20821 0.87542 0.86209 0.75274 1.90736 1.16106 1.87567 1.49488 1.22620 0.99698 0.90798 1.00303 1.22354 1.01677 0.93205 0.94413 1.22232 1.02742 0.90230 1.02195 1.22799 1.02259 1.01622 0.96256 1.22875 0.96081 0.96232 0.99601 1.22244 0.96049 0.94682 0.98816 0.90323 0.90817 0.89387 0.86065 0.92009 0.89432 0.87762 0.92770 0.91972 0.91486 0.89044 0.77236 0.91258 0.83534 0.93352 0.88039 0.89276 0.90239 0.86833 0.86684 0.89413 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 10.13 127.77 1.29 2.15 16 2 N -0.61 -13.49 2.85 -846.75 -2.41 -15.90 16 3 C 0.14 2.90 5.56 86.38 0.48 3.38 16 4 C 0.01 0.28 3.57 45.02 0.16 0.44 16 5 H 0.10 1.89 7.80 -2.38 -0.02 1.88 16 6 C -0.11 -2.63 7.83 31.24 0.24 -2.39 16 7 C 0.00 0.14 6.78 86.34 0.59 0.73 16 8 N -0.46 -16.82 4.71 -887.37 -4.18 -21.00 16 9 C 0.03 1.28 5.31 85.56 0.45 1.74 16 10 C 0.44 23.19 7.59 87.66 0.67 23.85 16 11 O -0.62 -38.27 15.13 -3.08 -0.05 -38.32 16 12 N -0.57 -31.20 5.29 -306.99 -1.62 -32.82 16 13 C -0.33 -19.84 9.68 84.04 0.81 -19.02 16 14 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 15 C -0.01 -0.42 5.50 84.92 0.47 0.04 16 16 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 17 Si 0.99 44.74 29.55 68.60 2.03 46.77 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 C 0.51 15.61 6.43 87.66 0.56 16.18 16 22 O -0.56 -23.62 14.91 -3.06 -0.05 -23.66 16 23 C -0.11 -2.81 2.80 -10.94 -0.03 -2.84 16 24 C -0.08 -2.17 6.81 31.03 0.21 -1.96 16 25 C -0.17 -4.76 3.09 -52.31 -0.16 -4.92 16 26 C -0.19 -5.63 10.53 30.46 0.32 -5.31 16 27 C -0.11 -2.29 10.53 30.46 0.32 -1.97 16 28 C -0.08 -2.37 7.42 30.98 0.23 -2.14 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.92 5.66 -2.39 -0.01 0.91 16 31 H 0.09 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.12 1.45 8.07 -2.39 -0.02 1.43 16 33 H 0.06 1.66 7.19 -2.38 -0.02 1.65 16 34 H 0.09 2.11 7.94 -2.39 -0.02 2.09 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 2.24 8.10 -2.39 -0.02 2.22 16 37 H 0.06 2.09 7.79 -2.39 -0.02 2.07 16 38 H 0.07 2.29 7.70 -2.39 -0.02 2.27 16 39 H 0.09 3.38 6.07 -2.38 -0.01 3.36 16 40 H 0.39 20.32 7.90 -92.71 -0.73 19.59 16 41 H 0.28 14.18 8.31 -92.71 -0.77 13.40 16 42 H 0.15 2.43 7.91 -2.38 -0.02 2.41 16 43 H 0.05 1.80 6.43 -2.39 -0.02 1.78 16 44 H 0.10 2.12 7.62 -2.39 -0.02 2.10 16 45 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 46 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 50 H 0.05 2.05 7.44 -2.39 -0.02 2.03 16 Total: -1.00 -83.80 400.52 0.84 -82.96 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: 0.21 Total: 44.02 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.62 Total: 7.96 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -7.93 Total: -119.74 kcal Atomic # 8 Polarization: -61.88 SS G_CDS: -0.09 Total: -61.98 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -83.80 0.84 -82.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656092095.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.086 kcal (2) G-P(sol) polarization free energy of solvation -83.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds